BO16180.complete Sequence
904 bp assembled on 2008-08-15
GenBank Submission: FJ633727
> BO16180.complete
GAAGTTATCAGTCGACATGAAATTCGCCTGCGCTACGGTTCTGCTCTTGG
CCACCATTCTTGGGGCCCAGGCTGTGGACTGGAATTCGGTCAAGAACCTG
AACATCGAGACCCCGATGCCCAAGGTCCATGGCGAGACCCTGCCCAGCGG
TAGGATTACTGGAGGACAGATTGCCGAGCCCAACCAGTTCCCCTACCAGG
TGGGACTACTGCTGTACATCACTGGAGGAGCTGCCTGGTGCGGAGGCACC
ATCATCAGTGACCGCTGGATCATCACCGCCGCCCATTGCACGGACAGCCT
GACCACCGGAGTGGATGTCTACCTGGGCGCCCACGATCGCACCAACGCCA
AGGAGGAGGGACAGCAGATCATCTTCGTGGAGACAAAGAATGTGATCGTG
CACGAGGATTGGATAGCCGAGACCATCACCAACGACATTTCCCTGATCAA
GTTGCCAGTGCCCATTGAGTTCAACAAGTACATCCAGCCCGCTAAGCTGC
CCGTGAAATCCGACAGCTACAGCACCTACGGCGGAGAGAATGCCATTGCC
TCCGGATGGGGCAAGATCAGCGACTCTGCTACCGGAGCGACCGACATTTT
GCAGTACGCTACGGTTCCCATCATGAACAACAGCGGCTGCTCTCCCTGGT
ACTTCGGTCTGGTTGCCGCCAGCAACATTTGCATCAAGACCACCGGCGGA
ATTTCCACCTGCAACGGCGACTCCGGCGGTCCTTTGGTCCTGGATGACGG
CAGCAACACCCTGATTGGAGCCACCTCCTTCGGCATTGCTCTCGGCTGCG
AGGTGGGATGGCCCGGTGTCTTCACCCGTATCACCTACTACCTGGACTGG
ATCGAAGAGAAGAGTGGTGTGGTCAACAACGGCGACGCAAGCTTTCTAGA
CCAT
BO16180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10472-RA | 873 | CG10472-PA | 1..870 | 17..886 | 4335 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10472-RA | 936 | CG10472-RA | 18..887 | 17..886 | 4335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6062434..6062893 | 476..17 | 2285 | 99.8 | Minus |
| 3L | 28110227 | 3L | 6061421..6061731 | 886..576 | 1555 | 100 | Minus |
| 3L | 28110227 | 3L | 6062274..6062372 | 575..477 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:07 has no hits.
BO16180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:58 Download gff for
BO16180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10472-RA | 1..891 | 3..895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:05 Download gff for
BO16180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10472-RA | 18..887 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:32 Download gff for
BO16180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10472-RA | 14..883 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:15 Download gff for
BO16180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10472-RA | 18..887 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:15 Download gff for
BO16180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6061419..6061731 | 576..888 | 99 | <- | Minus |
| 3L | 6062274..6062372 | 477..575 | 100 | <- | Minus |
| 3L | 6062434..6062893 | 17..476 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:05 Download gff for
BO16180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6054519..6054831 | 576..888 | 99 | <- | Minus |
| arm_3L | 6055374..6055472 | 477..575 | 100 | <- | Minus |
| arm_3L | 6055534..6055993 | 17..476 | 99 | | Minus |
BO16180.pep Sequence
Translation from 16 to 904
> BO16180.pep
MKFACATVLLLATILGAQAVDWNSVKNLNIETPMPKVHGETLPSGRITGG
QIAEPNQFPYQVGLLLYITGGAAWCGGTIISDRWIITAAHCTDSLTTGVD
VYLGAHDRTNAKEEGQQIIFVETKNVIVHEDWIAETITNDISLIKLPVPI
EFNKYIQPAKLPVKSDSYSTYGGENAIASGWGKISDSATGATDILQYATV
PIMNNSGCSPWYFGLVAASNICIKTTGGISTCNGDSGGPLVLDDGSNTLI
GATSFGIALGCEVGWPGVFTRITYYLDWIEEKSGVVNNGDASFLDH
BO16180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10472-PA | 290 | CG10472-PA | 1..290 | 1..290 | 1544 | 100 | Plus |
| CG7542-PB | 270 | CG7542-PB | 27..260 | 47..279 | 585 | 50.2 | Plus |
| CG7542-PA | 270 | CG7542-PA | 27..260 | 47..279 | 585 | 50.2 | Plus |
| Jon65Aiv-PA | 271 | CG6467-PA | 1..271 | 1..285 | 572 | 43.9 | Plus |
| Jon65Aiii-PA | 274 | CG6483-PA | 25..272 | 37..285 | 559 | 47.8 | Plus |
