Clone BO16181 Report

Search the DGRC for BO16181

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:161
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptATPsyn-b-RA
Protein status:BO16181.pep: Imported from assembly
Sequenced Size:763

Clone Sequence Records

BO16181.5prime Sequence

617 bp (497 high quality bases) assembled on 2006-06-16

> BO16181.5prime
GAAGTTATCAGTCGACATGTTCTCGAGAGCCGCTCTTCTAACAGCCCAGC
GCCCCTTGACCGTGGCCGCCACCCGGTCGGCAGCCGCTGCTGCCGCTCCT
GGCGGAGCCATCGAGCGCCGCCAGCGCCCCGAGCATCCCGGCAAGGTCCG
TCTGGGATTCCTGCCCGAGGAGTGGTTCCAGTTCTTCTACAACAAGACCG
GTGTCACCGGACCCTACACCTTCGGCGTGGGTCTGATCACCTATCTCTGC
TCCAAGGAGATCTACGTCATGGAGCACGAGTACTACAGCGGTCTGTCGCT
CGGTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCA
AGTGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGA
CGCGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAA
GGAGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGG
AGAACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAAT
GTGTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCA
CGTCGAGCGTCCCCTTA

BO16181.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8189-PA 732 ATPsyn-b-RA 1..601 17..617 2980 99.8 Plus
CG8189-PB 480 ATPsyn-b-RB 1..349 269..617 1720 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 918 CG8189-RA 70..670 17..617 2990 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9730309..9730640 42..373 1660 100 Plus
3L 28110227 3L 9730733..9730976 374..617 1205 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 21:53:34 has no hits.

BO16181.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:03 Download gff for BO16181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8189-PA 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:34:34 Download gff for BO16181.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 70..669 17..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:40 Download gff for BO16181.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 70..669 17..616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:40 Download gff for BO16181.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9730068..9730095 17..44 100 -> Plus
3L 9730312..9730640 45..373 100 -> Plus
3L 9730733..9730975 374..616 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:34:34 Download gff for BO16181.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9723168..9723195 17..44 100 -> Plus
arm_3L 9723412..9723740 45..373 100 -> Plus
arm_3L 9723833..9724075 374..616 99   Plus

BO16181.complete Sequence

763 bp assembled on 2008-08-15

GenBank Submission: FJ633728

> BO16181.complete
GAAGTTATCAGTCGACATGTTCTCGAGAGCCGCTCTTCTAACAGCCCAGC
GCCCCTTGACCGTGGCCGCCACCCGGTCGGCAGCCGCTGCTGCCGCTCCT
GGCGGAGCCATCGAGCGCCGCCAGCGCCCCGAGCATCCCGGCAAGGTCCG
TCTGGGATTCCTGCCCGAGGAGTGGTTCCAGTTCTTCTACAACAAGACCG
GTGTCACCGGACCCTACACCTTCGGCGTGGGTCTGATCACCTATCTCTGC
TCCAAGGAGATCTACGTCATGGAGCACGAGTACTACAGCGGTCTGTCGCT
CGGTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCA
AGTGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGA
CGCGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAA
GGAGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGG
AGAACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAAT
GTGTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCA
CGTCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCA
ATGTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAG
TGCATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCGCAAG
CTTTCTAGACCAT

BO16181.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 732 CG8189-PA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 918 CG8189-RA 70..798 17..745 3645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9730733..9731104 374..745 1860 100 Plus
3L 28110227 3L 9730309..9730640 42..373 1660 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:16:09 has no hits.

BO16181.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:53 Download gff for BO16181.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 92..823 17..749 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:49 Download gff for BO16181.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 75..798 22..747 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:52 Download gff for BO16181.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 97..820 22..747 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:22 Download gff for BO16181.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 75..798 22..747 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:22 Download gff for BO16181.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9730073..9730095 22..44 100 -> Plus
3L 9730312..9730640 45..373 100 -> Plus
3L 9730733..9731104 374..747 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:49 Download gff for BO16181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9723173..9723195 22..44 100 -> Plus
arm_3L 9723412..9723740 45..373 100 -> Plus
arm_3L 9723833..9724204 374..747 99   Plus

BO16181.pep Sequence

Translation from 16 to 763

> BO16181.pep
MFSRAALLTAQRPLTVAATRSAAAAAAPGGAIERRQRPEHPGKVRLGFLP
EEWFQFFYNKTGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLGIMAI
IAVKKLGPVIAKWADGEIDKIESEWKEGREAELKVLSDAIEAEKKEQWRA
DGALLLMEAKKENIALQLEAAFRERAMNVYSEVKRRLDYQVECRHVERRL
SQKHMVNWITTNVLASISPQQEKETLNKCIADLSALALRVKSAASFLDH

BO16181.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-PA 243 CG8189-PA 1..243 1..243 1237 100 Plus
CG17300-PA 152 CG17300-PA 1..133 1..137 245 43.3 Plus