Clone Sequence Records
BO16181.5prime Sequence
617 bp (497 high quality bases) assembled on 2006-06-16
> BO16181.5prime
GAAGTTATCAGTCGACATGTTCTCGAGAGCCGCTCTTCTAACAGCCCAGC
GCCCCTTGACCGTGGCCGCCACCCGGTCGGCAGCCGCTGCTGCCGCTCCT
GGCGGAGCCATCGAGCGCCGCCAGCGCCCCGAGCATCCCGGCAAGGTCCG
TCTGGGATTCCTGCCCGAGGAGTGGTTCCAGTTCTTCTACAACAAGACCG
GTGTCACCGGACCCTACACCTTCGGCGTGGGTCTGATCACCTATCTCTGC
TCCAAGGAGATCTACGTCATGGAGCACGAGTACTACAGCGGTCTGTCGCT
CGGTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCA
AGTGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGA
CGCGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAA
GGAGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGG
AGAACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAAT
GTGTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCA
CGTCGAGCGTCCCCTTA
BO16181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8189-PA | 732 | ATPsyn-b-RA | 1..601 | 17..617 | 2980 | 99.8 | Plus |
CG8189-PB | 480 | ATPsyn-b-RB | 1..349 | 269..617 | 1720 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 918 | CG8189-RA | 70..670 | 17..617 | 2990 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9730309..9730640 | 42..373 | 1660 | 100 | Plus |
3L | 28110227 | 3L | 9730733..9730976 | 374..617 | 1205 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:53:34 has no hits.
BO16181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:03 Download gff for
BO16181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8189-PA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:34:34 Download gff for
BO16181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 70..669 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:40 Download gff for
BO16181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 70..669 | 17..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:40 Download gff for
BO16181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9730068..9730095 | 17..44 | 100 | -> | Plus |
3L | 9730312..9730640 | 45..373 | 100 | -> | Plus |
3L | 9730733..9730975 | 374..616 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:34:34 Download gff for
BO16181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9723168..9723195 | 17..44 | 100 | -> | Plus |
arm_3L | 9723412..9723740 | 45..373 | 100 | -> | Plus |
arm_3L | 9723833..9724075 | 374..616 | 99 | | Plus |
BO16181.complete Sequence
763 bp assembled on 2008-08-15
GenBank Submission: FJ633728
> BO16181.complete
GAAGTTATCAGTCGACATGTTCTCGAGAGCCGCTCTTCTAACAGCCCAGC
GCCCCTTGACCGTGGCCGCCACCCGGTCGGCAGCCGCTGCTGCCGCTCCT
GGCGGAGCCATCGAGCGCCGCCAGCGCCCCGAGCATCCCGGCAAGGTCCG
TCTGGGATTCCTGCCCGAGGAGTGGTTCCAGTTCTTCTACAACAAGACCG
GTGTCACCGGACCCTACACCTTCGGCGTGGGTCTGATCACCTATCTCTGC
TCCAAGGAGATCTACGTCATGGAGCACGAGTACTACAGCGGTCTGTCGCT
CGGTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCA
AGTGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGA
CGCGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAA
GGAGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGG
AGAACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAAT
GTGTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCA
CGTCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCA
ATGTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAG
TGCATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCGCAAG
CTTTCTAGACCAT
BO16181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 732 | CG8189-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 918 | CG8189-RA | 70..798 | 17..745 | 3645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9730733..9731104 | 374..745 | 1860 | 100 | Plus |
3L | 28110227 | 3L | 9730309..9730640 | 42..373 | 1660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:16:09 has no hits.
BO16181.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:53 Download gff for
BO16181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 92..823 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:49 Download gff for
BO16181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 75..798 | 22..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:52 Download gff for
BO16181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 97..820 | 22..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:22 Download gff for
BO16181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 75..798 | 22..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:22 Download gff for
BO16181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9730073..9730095 | 22..44 | 100 | -> | Plus |
3L | 9730312..9730640 | 45..373 | 100 | -> | Plus |
3L | 9730733..9731104 | 374..747 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:49 Download gff for
BO16181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9723173..9723195 | 22..44 | 100 | -> | Plus |
arm_3L | 9723412..9723740 | 45..373 | 100 | -> | Plus |
arm_3L | 9723833..9724204 | 374..747 | 99 | | Plus |
BO16181.pep Sequence
Translation from 16 to 763
> BO16181.pep
MFSRAALLTAQRPLTVAATRSAAAAAAPGGAIERRQRPEHPGKVRLGFLP
EEWFQFFYNKTGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLGIMAI
IAVKKLGPVIAKWADGEIDKIESEWKEGREAELKVLSDAIEAEKKEQWRA
DGALLLMEAKKENIALQLEAAFRERAMNVYSEVKRRLDYQVECRHVERRL
SQKHMVNWITTNVLASISPQQEKETLNKCIADLSALALRVKSAASFLDH
BO16181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-PA | 243 | CG8189-PA | 1..243 | 1..243 | 1237 | 100 | Plus |
CG17300-PA | 152 | CG17300-PA | 1..133 | 1..137 | 245 | 43.3 | Plus |