Clone Sequence Records
BO16190.5prime Sequence
688 bp (648 high quality bases) assembled on 2006-06-16
> BO16190.5prime
GAAGTTATCAGTCGACATGGACTGGTACGTGGGCACAGAGTGGGAGGACA
AGAACCGTGGTCTGGCCAAGAAGGTAAAGTGGCCTCCAATTCACCGAAAT
GGACAAGCCCACGATAATCAGTACGGTGGAATTCAGTGTCAACAAGAAAG
CCACCAACTTGGGAGGACGACCTAGCAAATATTTGGTCAGCGATGAGTCC
GCTACGTATCCTCAAAAGCACAGCCTGGAAATGGGCACCAGCCTGACCGC
AGTGGACTGCTACTTGGAGCTGCTGCTGCAGCAATTTGTGCCGGGTGAAA
CGGCAGCCTGTAGCATCACGACAAAAACCGGCGAACGAATAGAATTTGAA
CTGAAGCTGGAGAAAATTGTGAAGAACACTCAGGTGGAGAAGCTAAGCGC
TGCAGAGATCTATGAGGTGGCACTACGTCTCAAGGAAAGCGGCGTGGCCA
CCTTTAAGACGTTCCCGAAATTCGCCTTTGATTACTTTGTGCGTGCCGCA
AAGTTGCTGATCACCTACAAACCCTTCGATAAACTGACCAAAAAGACCAA
TGGCATCAACGGCCAGGCGGTGGAGGAGCTCTTTATTCAGATACAGACCA
ACCTGGCCGCCTGTTTGCTGCAGGAGAAACGCTATGAGCATGTAATCTAC
CACACGCAGTTTGTGGAGACGGAGGAGAGTCCCAGCGA
BO16190.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17282-PA | 861 | CG17282-RA | 1..671 | 17..688 | 3270 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 1000 | CG17282-RA | 73..743 | 17..688 | 3305 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21118114..21118784 | 688..17 | 3280 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-03 05:10:08 has no hits.
BO16190.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:04 Download gff for
BO16190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-PA | 1..670 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:15:02 Download gff for
BO16190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 73..742 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:27:21 Download gff for
BO16190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bdbt-RA | 73..742 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:27:21 Download gff for
BO16190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21118115..21118784 | 17..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:15:02 Download gff for
BO16190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16943837..16944506 | 17..687 | 99 | | Minus |
BO16190.complete Sequence
892 bp assembled on 2008-11-10
GenBank Submission: KX799571
> BO16190.complete
GAAGTTATCAGTCGACATGGACTGGTACGTGGGCACAGAGTGGGAGGACA
AGAACCGTGGTCTGGCCAAGAAGGTAATTGGCCTCCAATTCACCGAAATG
GACAAGCCCACGATAATCAGTACGGTGGAATTCAGTGTCAACAAGAAAGC
CACCAACTTGGGAGGACGACCTAGCAAATATTTGGTCAGCGATGAGTCCG
CTACGTATCCTCAAAAGCACAGCCTGGAAATGGGCACCAGCCTGACCGCA
GTGGACTGCTACTTGGAGCTGCTGCTGCAGCAATTTGTGCCGGGTGAAAC
GGCAGCCTGTAGCATCACGACAAAAACCGGCGAACGAATAGAATTTGAAC
TGAAGCTGGAGAAAATTGTGAAGAACACTCAGGTGGAGAAGCTAAGCGCT
GCAGAGATCTATGAGGTGGCACTACGTCTCAAGGAAAGCGGCGTGGCCAC
CTTTAAGACGTTCCCGAAATTCGCCTTTGATTACTTTGTGCGTGCCGCAA
AGTTGCTGATCACCTACAAACCCTTCGATAAACTGACCAAAAAGACCAAT
GGCATCAACGGCCAGGCGGTGGAGGAGCTCTTTATTCAGATACAGACCAA
CCTGGCCGCCTGTTTGCTGCAGGAGAAACGCTATGAGCATGTAATCTACC
ACACGCAGTTTGTGGAGACGGAGGAGAGTCCCAGCGAGAAGAGCATCTAC
CGGCGTGCACTCGCCTACTATCACCTGAAGGAGTTCGCCAAGGCGCAAGC
CACCATCGAGCGAATGCCCAACTACGAGGAGAAGCGAGAGTTCAGCAAGC
TGCGCGACAACATCGCTGTTAGCTGGAAGGATAGCAAGGCCCATTACAAG
GAGGTGGTGCAACGTATGTTTAGTGCAAGCTTTCTAGACCAT
BO16190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 861 | CG17282-PA | 1..858 | 17..874 | 4275 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 1000 | CG17282-RA | 73..930 | 17..874 | 4275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21117927..21118784 | 874..17 | 4275 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:58:07 has no hits.
BO16190.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:12 Download gff for
BO16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 66..926 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:02 Download gff for
BO16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 73..930 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:31 Download gff for
BO16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 66..923 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:42 Download gff for
BO16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bdbt-RA | 73..930 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:42 Download gff for
BO16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21117925..21118784 | 17..876 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:02 Download gff for
BO16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16943647..16944506 | 17..876 | 99 | | Minus |
BO16190.pep Sequence
Translation from 16 to 892
> BO16190.pep
MDWYVGTEWEDKNRGLAKKVIGLQFTEMDKPTIISTVEFSVNKKATNLGG
RPSKYLVSDESATYPQKHSLEMGTSLTAVDCYLELLLQQFVPGETAACSI
TTKTGERIEFELKLEKIVKNTQVEKLSAAEIYEVALRLKESGVATFKTFP
KFAFDYFVRAAKLLITYKPFDKLTKKTNGINGQAVEELFIQIQTNLAACL
LQEKRYEHVIYHTQFVETEESPSEKSIYRRALAYYHLKEFAKAQATIERM
PNYEEKREFSKLRDNIAVSWKDSKAHYKEVVQRMFSASFLDH
BO16190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-PA | 286 | CG17282-PA | 1..286 | 1..286 | 1465 | 100 | Plus |
