Clone Sequence Records
BO16201.complete Sequence
2065 bp assembled on 2010-04-13
> BO16201.complete
GAAGTTATCAGTCGACATGACCAAGAGGGACCTACAGCAGTACTATCGCT
ACTACAACATGAACAAGAACCGTGGACAATTCAAGAAGGTTGTGATTGTG
ATCTTCGCCCTCTGCGTGTTTTCCTACCTATGTGTGGACTACAATCTGAG
GACGAAACTACTTCGTTTCCGTGATGGATTCGATTTTATGGCCCGCATCG
AGGACCACTATGGTGGAAATGTGACAACGGCCTATTTCGTTGACACGACG
GGCTGCCGGATGCCACACTTTGAGGTCAGCGACGACACCATTGCCCAGTT
CATTTTCAAGCCACGTCCGTACAGCTGCAACAGAGCTCTGATCCGGACGA
GCGACACAATTCCCGGACAGCTGCATCTCAATCTGGAGGCCAGTGAGCTG
CTCGCATACTACAACATCAGTGACCTGTCCTCCGTTAATTGCAACTATAC
GGAGGTGAAGCGCAAAACCGATTCTAGTAACACCCACAGTCCGGCAGTGA
GTTTTAAGCTGGACAAAGTTATGAAACTGCCTCTCAGCTCGGAGTTCATT
TGCATGTGGTGCTATGATTCACTGGACAAACTCTTCTACAAGGACTGTCA
TTTTTTTGCAGTCGATAAGCCAAGGATTAGGCCCCCACTTAAGACTGGAA
CCGATAGGGTGAGCTTCAACAAGAGCAAGGAGGAGCAGGAACGGCTATCC
GTAATGATACTCGGCATGGATAGCCTGTCGCATCTAAATTTCCTGCGCCA
GATGCGCCGCACAGCGAACTACGTCCGTAAGCATCTGTCCCACGTGGAAT
TTTGGGGCTACAACAAGGTGGGCGACAATACGTTTCCCAATCTCGTGCCC
CTGCTAAGTGGCCTGGATGATCAGGAACTGAATCTGGCCTGCACGCCAAA
GACATTGCGATCCTATGATAGGTGCTCATTCATTTGGAAACGCTACCAGC
AACTGGGTTATCGCTCCATTTTCGCCGAGGATGTGGCAATGCTCTCGGCA
TTCAATTACAATCAAAATGGGTTCCGAAAGCAGCCAACGGATTATTATCT
GCGACCCATGATTATGGAAATGGAAAAGACTGTGGCCTTCAAGAAGGACC
TCAACATGCACTTGTGCATGGGCAGCCGGAGGACGGCGGATGTGCTGCTC
GAGTATATGAAGAAATTGGTGCCACGAATGAGCAGGGATCTTTACTTTTC
ATTTTTTTGGACGGTGGCCCTAACCCATGACTATTTTAATTTCCCCTCAC
TACTGGATGAGGCCATGTTGCAACAGTTGATGCAGCTGCAAGATTCCGGA
TTGCTCAATCGCACGGTGGTAATGTTGCTATCCGATCACGGACTGAGATG
GGGTTCCTTTCGTCGTACCTACCAGGGCATGATGGAGGAGCGCCAGCCCC
TAATGATGCTTTTGTATCCGCCATGGATGACCGAGCGTTATCCGGAGGCA
ATTGCCAATCTTAGGTTAAATGCCCGCCGGCTAACCACACCATTTGATGT
GCACGCGACAATGTTGCAGCTGCTAAATCTTCACAATCTGGAGGCAGATC
AGTTGCAACGCAGATCAACAGAGATGGACGAGCCGGATAGCACGCTGCCC
AGAGGCATTAGCCTATTCCTGCCCATCCCGGCTGCTCGGACCTGCGAGCA
GGCAGGGATTGCCGCCCACTGGTGCACCTGCCATCAGCGCCAGGAGCTGC
AGACAAACGATCCACGTGTCCAGCGGGCGGCGCGCTATCTGGTACGCTTG
ATCAATAACCGACTGAAGGATAGCTCACAGTGCAGAACCCTATACCTGAA
CTCCATACTCCAGGCTCTGATTGCAGCGCCGCACTCGAAGATTGTGAAGA
ACATTTCCACGGACTACGCAGTGGACATCACCCTGCGACTGCAGACGAAG
CCCGGGCTGGGTGTGTTTGAGTCCACGGTGCGGATGACGGGCTATACGAC
CGTACTAACGGGCACCATTAGTCGTCTGAATCTGTACGGAAGCCAGAGCT
ACTGTCTCAACGATCCGGCGCTAAAAATGTTCTGCTATTGCCACAGAGCA
AGCTTTCTAGACCAT
BO16201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16854-RB | 2118 | CG16854-PB | 85..2115 | 17..2047 | 10155 | 100 | Plus |
| CG16854-RD | 2118 | CG16854-PD | 85..2115 | 17..2047 | 10155 | 100 | Plus |
| CG16854-RC | 2034 | CG16854-PC | 1..2031 | 17..2047 | 10155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16854-RB | 2755 | CG16854-RB | 461..2491 | 17..2047 | 10155 | 100 | Plus |
| CG16854-RD | 3048 | CG16854-RD | 461..2491 | 17..2047 | 10155 | 100 | Plus |
| CG16854-RC | 2350 | CG16854-RC | 56..2086 | 17..2047 | 10155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11088386..11090416 | 17..2047 | 10155 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:58:48 has no hits.
BO16201.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:19 Download gff for
BO16201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RA | 56..2086 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:29 Download gff for
BO16201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RC | 56..2086 | 17..2049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:55 Download gff for
BO16201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RC | 56..2086 | 17..2049 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:55 Download gff for
BO16201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11088386..11090416 | 17..2049 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:29 Download gff for
BO16201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11088386..11090416 | 17..2049 | 99 | | Plus |
BO16201.3prime Sequence
901 bp (792 high quality bases) assembled on 2006-10-13
> BO16201.3prime
ATGGTCTAGAAAGCTTGCTCTGTGGCAATAGCAGAACATTTTTAGCGCCG
GATCGTTGAGACAGTAGCTCTGGCTTCCGTACAGATTCAGACGACTAATG
GTGCCCGTTAGTACGGTCGTATAGCCCGTCATCCGCACCGTGGACTCAAA
CACACCCAGCCCGGGCTTCGTCTGCAGTCGCAGGGTGATGTCCACTGCGT
AGTCCGTGGAAATGTTCTTCACAATCTTCGAGTGCGGCGCTGCAATCAGA
GCCTGGAGTATGGAGTTCAGGTATAGGGTTCTGCACTGTGAGCTATCCTT
CAGTCGGTTATTGATCAAGCGTACCAGATAGCGCGCCGCCCGCTGGACAC
GTGGATCGTTTGTCTGCAGCTCCTGGCGCTGATGGCAGGTGCACCAGTGG
GCGGCAATCCCTGCCTGCTCGCAGGTCCGAGCAGCCGGGATGGGCAGGAA
TAGGCTAATGCCTCTGGGCAGCGTGCTATCCGGCTCGTCCATCTCTGTTG
ATCTGCGTTGCAACTGATCTGCCTCCAGATTGTGAAGATTTAGCAGCTGC
AACATTGTCGCGTGCACATCAAATGGTGTGGTTAGCCGGCGGGCATTTAA
CCTAAGATTGGCAATTGCCTCCGGATAACGCTCGGTCATCCATGGCGGAT
ACAAAAGCATCATTAGGGGCTGGCGCTCCTCCATCATGCCCTGGTAGGTA
CGACGAAAGGAACCCCATCTCAGTCCGTGATCGGATAGCAACATTACCAC
CGTGCGATTGAGCAATCCGGAATCTTGCAGCTGCATCAACTGTTGNCACA
TGGCCTCATCCAGTAGTGAGGGGAAATTAAAATAGTCATGGGTTAGGGCC
ACCGTCAAAAAAATGAAAAGTAAAGATCCCTGCTCATTCGTGGCACCAAT
T
BO16201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16854-PA | 2034 | CG16854-RA | 1148..2031 | 901..19 | 4336 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16854-RB | 2755 | CG16854-RB | 1608..2491 | 901..19 | 4369 | 99.7 | Minus |
| CG16854-RD | 3048 | CG16854-RD | 1608..2491 | 901..19 | 4369 | 99.7 | Minus |
| CG16854-RC | 2350 | CG16854-RC | 1203..2086 | 901..19 | 4369 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11089533..11090416 | 901..19 | 4344 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:52:40 has no hits.
BO16201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:09 Download gff for
BO16201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-PA | 1148..2034 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:25:19 Download gff for
BO16201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RC | 1203..2090 | 14..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:52 Download gff for
BO16201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RC | 1203..2090 | 14..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:52 Download gff for
BO16201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11089533..11090420 | 14..901 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:25:19 Download gff for
BO16201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11089533..11090420 | 14..901 | 99 | -> | Minus |
BO16201.5prime Sequence
896 bp (813 high quality bases) assembled on 2006-10-13
> BO16201.5prime
GAAGTTATCAGTCGACATGACCAAGAGGGACCTACAGCAGTACTATCGCT
ACTACAACATGAACAAGAACCGTGGACAATTCAAGAAGGTTGTGATTGTG
ATCTTCGCCCTCTGCGTGTTTTCCTACCTATGTGTGGACTACAATCTGAG
GACGAAACTACTTCGTTTCCGTGATGGATTCGATTTTATGGCCCGCATCG
AGGACCACTATGGTGGAAATGTGACAACGGCCTATTTCGTTGACACGACG
GGCTGCCGGATGCCACACTTTGAGGTCAGCGACGACACCATTGCCCAGTT
CATTTTCAAGCCACGTCCGTACAGCTGCAACAGAGCTCTGATCCGGACGA
GCGACACAATTCCCGGACAGCTGCATCTCAATCTGGAGGCCAGTGAGCTG
CTCGCATACTACAACATCAGTGACCTGTCCTCCGTTAATTGCAACTATAC
GGAGGTGAAGCGCAAAACCGATTCTAGTAACACCCACAGTCCGGCAGTGA
GTTTTAAGCTGGACAAAGTTATGAAACTGCCTCTCAGCTCGGAGTTCATT
TGCATGTGGTGCTATGATTCACTGGACAAACTCTTCTACAAGGACTGTCA
TTTTTTTGCAGTCGATAAGCCAAGGATTAGGCCCCCACTTAAGACTGGAA
CCGATAGGGTGAGCTTCAACAAGAGCAAGGAGGAGCAGGAACGGCTATCC
GTAATGATACTCGGCATGGATAGCCTGTCGCATCTAAATTTCCTGCGCCA
GATGCGCCGCACAGCGAACTACGTCCGTAAGCATCTGTCCCACGTGGAAT
TTTGGGGCTACAACAAAGTGGGCGACAATACGTTTCCCCATCTCGTGCCC
CTGCTAAGTGGCCTGGATGATCAAGAACTGAATCTGGGCTGCACGC
BO16201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16854-PA | 2034 | CG16854-RA | 1..880 | 17..896 | 4300 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16854-RB | 2755 | CG16854-RB | 461..1340 | 17..896 | 4340 | 99.5 | Plus |
| CG16854-RD | 3048 | CG16854-RD | 461..1340 | 17..896 | 4340 | 99.5 | Plus |
| CG16854-RC | 2350 | CG16854-RC | 56..935 | 17..896 | 4340 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11088386..11089265 | 17..896 | 4340 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-10 14:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 3752..3783 | 559..591 | 108 | 84.8 | Plus |
BO16201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:11 Download gff for
BO16201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:06:28 Download gff for
BO16201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RC | 51..935 | 10..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:12 Download gff for
BO16201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RC | 51..935 | 10..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:12 Download gff for
BO16201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11088381..11089265 | 10..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:06:28 Download gff for
BO16201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11088381..11089265 | 10..896 | 99 | | Plus |
BO16201.pep Sequence
Translation from 16 to 2065
> BO16201.pep
MTKRDLQQYYRYYNMNKNRGQFKKVVIVIFALCVFSYLCVDYNLRTKLLR
FRDGFDFMARIEDHYGGNVTTAYFVDTTGCRMPHFEVSDDTIAQFIFKPR
PYSCNRALIRTSDTIPGQLHLNLEASELLAYYNISDLSSVNCNYTEVKRK
TDSSNTHSPAVSFKLDKVMKLPLSSEFICMWCYDSLDKLFYKDCHFFAVD
KPRIRPPLKTGTDRVSFNKSKEEQERLSVMILGMDSLSHLNFLRQMRRTA
NYVRKHLSHVEFWGYNKVGDNTFPNLVPLLSGLDDQELNLACTPKTLRSY
DRCSFIWKRYQQLGYRSIFAEDVAMLSAFNYNQNGFRKQPTDYYLRPMIM
EMEKTVAFKKDLNMHLCMGSRRTADVLLEYMKKLVPRMSRDLYFSFFWTV
ALTHDYFNFPSLLDEAMLQQLMQLQDSGLLNRTVVMLLSDHGLRWGSFRR
TYQGMMEERQPLMMLLYPPWMTERYPEAIANLRLNARRLTTPFDVHATML
QLLNLHNLEADQLQRRSTEMDEPDSTLPRGISLFLPIPAARTCEQAGIAA
HWCTCHQRQELQTNDPRVQRAARYLVRLINNRLKDSSQCRTLYLNSILQA
LIAAPHSKIVKNISTDYAVDITLRLQTKPGLGVFESTVRMTGYTTVLTGT
ISRLNLYGSQSYCLNDPALKMFCYCHRASFLDH
BO16201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16854-PB | 705 | CG16854-PB | 29..705 | 1..677 | 3590 | 100 | Plus |
| CG16854-PD | 705 | CG16854-PD | 29..705 | 1..677 | 3590 | 100 | Plus |
| CG16854-PC | 677 | CG16854-PC | 1..677 | 1..677 | 3590 | 100 | Plus |
| CG3123-PA | 634 | CG3123-PA | 13..633 | 29..675 | 986 | 34.2 | Plus |
| CG11630-PA | 631 | CG11630-PA | 34..630 | 62..675 | 901 | 36.7 | Plus |
