Clone Sequence Records
BO16202.3prime Sequence
650 bp (650 high quality bases) assembled on 2006-10-13
> BO16202.3prime
ATGGTCTAGAAAGCTTGCGCTTGATCCTGGCAGGGCAATGTGTGCGTTGT
TCCTGTTTCCAACATCGTCATCATCCGAGTCCGTTAGCAGGTCGGATAGA
CTGAGATCCGAGGAGCGTTTCTCGAGGCCCTCCTCCACCAGTTGTCGCGT
CGGAAGGTTGGCGGGCATGGCGTACGTCTTCATGCAAAGGATAACGTGCT
CGCGAAAGAGTTGCTCCGAGTGTTTCATGATGGCGGCGGCCCGGTGATTC
AGTGAGTCGTGCGGATTCGGGTAACGCAGCAGCTGCGGCAGAAAGGTTTC
GAATATGTTGACCAGGTCATAGCTGGATGACCAAGCCTGCTTAAGGACAT
TCATGCAGACCAGGCCCGTGATGAACTCGATGTTTGGGTGCAGGATCTTG
GTGACAAAGCGAACGCGCGGTGCCGTCAACGGATAGTCCTGCGGCATGGT
CACATTTACCGTCCAAATGCCACCCTCGTAGGCACTGCCCAGTGGACCCT
CGAGGCAAACATTCAGGTTGGTCATGTCGTCGTCCACGGTGGTGCGGTAG
CCCGACGCCAACAGCCGGTTAACATCCCGGTCCAGACGGCGCCCCGCCAT
CGGCAACGTCGTGTTCACCAGCAACTGCTCGGCCATGTCGACTGATAACT
BO16202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14739-PA | 621 | CG14739-RA | 1..618 | 636..19 | 3040 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14739-RA | 902 | CG14739-RA | 183..800 | 636..19 | 3060 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12048355..12048972 | 19..636 | 3060 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:21:26 has no hits.
BO16202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:11 Download gff for
BO16202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14739-PA | 1..621 | 18..636 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:53:40 Download gff for
BO16202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14739-RA | 183..804 | 13..636 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:36 Download gff for
BO16202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14739-RA | 183..804 | 13..636 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:36 Download gff for
BO16202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12048351..12048972 | 13..636 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:53:40 Download gff for
BO16202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7874073..7874694 | 13..636 | 99 | | Plus |
BO16202.5prime Sequence
650 bp (650 high quality bases) assembled on 2006-10-13
> BO16202.5prime
GAAGTTATCAGTCGACATGGCCGAGCAGTTGCTGGTGAACACGACGTTGC
CGATGGCGGGGCGCCGTCTGGACCGGGATGTTAACCGGCTGTTGGCGTCG
GGCTACCGCACCACCGTGGACGACGACATGACCAACCTGAATGTTTGCCT
CGAGGGTCCACTGGGCAGTGCCTACGAGGGTGGCATTTGGACGGTAAATG
TGACCATGCCGCAGGACTATCCGTTGACGGCACCGCGCGTTCGCTTTGTC
ACCAAGATCCTGCACCCAAACATCGAGTTCATCACGGGCCTGGTCTGCAT
GAATGTCCTTAAGCAGGCTTGGTCATCCAGCTATGACCTGGTCAACATAT
TCGAAACCTTTCTGCCGCAGCTGCTGCGTTACCCGAATCCGCACGACTCA
CTGAATCACCGGGCCGCCGCCATCATGAAACACTCGGAGCAACTCTTTCG
CGAGCACGTTATCCTTTGCATGAAGACGTACGCCATGCCCGCCAACCTTC
CGACGCGACAACTGGTGGAGGAGGGCCTCGAGAAACGCTCCTCGGATCTC
AGTCTATCCGACCTGCTAACGGACTCGGATGATGACGATGTTGGAAACAG
GAACAACGCACACATTGCCCTGCCAGGATCAAGCGCAAGCTTTCTAGACC
BO16202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14739-PA | 621 | CG14739-RA | 1..618 | 17..634 | 3040 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14739-RA | 902 | CG14739-RA | 183..800 | 17..634 | 3060 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12048355..12048972 | 634..17 | 3060 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:50:00 has no hits.
BO16202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:12 Download gff for
BO16202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14739-PA | 1..621 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:22:20 Download gff for
BO16202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14739-RA | 183..804 | 17..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:51:59 Download gff for
BO16202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14739-RA | 183..804 | 17..640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:51:59 Download gff for
BO16202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12048351..12048972 | 17..640 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:22:20 Download gff for
BO16202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7874073..7874694 | 17..640 | 99 | | Minus |
BO16202.complete Sequence
652 bp assembled on 2011-06-28
GenBank Submission: KX796268
> BO16202.complete
GAAGTTATCAGTCGACATGGCCGAGCAGTTGCTGGTGAACACGACGTTGC
CGATGGCGGGGCGCCGTCTGGACCGGGATGTTAACCGGCTGTTGGCGTCG
GGCTACCGCACCACCGTGGACGACGACATGACCAACCTGAATGTTTGCCT
CGAGGGTCCACTGGGCAGTGCCTACGAGGGTGGCATTTGGACGGTAAATG
TGACCATGCCGCAGGACTATCCGTTGACGGCACCGCGCGTTCGCTTTGTC
ACCAAGATCCTGCACCCAAACATCGAGTTCATCACGGGCCTGGTCTGCAT
GAATGTCCTTAAGCAGGCTTGGTCATCCAGCTATGACCTGGTCAACATAT
TCGAAACCTTTCTGCCGCAGCTGCTGCGTTACCCGAATCCGCACGACTCA
CTGAATCACCGGGCCGCCGCCATCATGAAACACTCGGAGCAACTCTTTCG
CGAGCACGTTATCCTTTGCATGAAGACGTACGCCATGCCCGCCAACCTTC
CGACGCGACAACTGGTGGAGGAGGGCCTCGAGAAACGCTCCTCGGATCTC
AGTCTATCCGACCTGCTAACGGACTCGGATGATGACGATGTTGGAAACAG
GAACAACGCACACATTGCCCTGCCAGGATCAAGCGCAAGCTTTCTAGACC
AT
BO16202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14739-RA | 621 | CG14739-PA | 1..618 | 17..634 | 3060 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14739-RA | 902 | CG14739-RA | 183..800 | 17..634 | 3060 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12048355..12048972 | 634..17 | 3060 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:21:17 has no hits.
BO16202.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:37 Download gff for
BO16202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14739-RA | 183..800 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:41 Download gff for
BO16202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14739-RA | 183..800 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:05 Download gff for
BO16202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14739-RA | 183..800 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:05 Download gff for
BO16202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12048351..12048972 | 17..636 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:41 Download gff for
BO16202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7874073..7874694 | 17..636 | 99 | | Minus |
BO16202.pep Sequence
Translation from 16 to 652
> BO16202.pep
MAEQLLVNTTLPMAGRRLDRDVNRLLASGYRTTVDDDMTNLNVCLEGPLG
SAYEGGIWTVNVTMPQDYPLTAPRVRFVTKILHPNIEFITGLVCMNVLKQ
AWSSSYDLVNIFETFLPQLLRYPNPHDSLNHRAAAIMKHSEQLFREHVIL
CMKTYAMPANLPTRQLVEEGLEKRSSDLSLSDLLTDSDDDDVGNRNNAHI
ALPGSSASFLDH
BO16202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14739-PA | 206 | CG14739-PA | 1..206 | 1..206 | 1075 | 100 | Plus |
UbcE2H-PB | 183 | CG2257-PB | 4..180 | 12..190 | 358 | 41.7 | Plus |
UbcE2H-PC | 183 | CG2257-PC | 4..180 | 12..190 | 358 | 41.7 | Plus |
UbcE2H-PA | 183 | CG2257-PA | 4..180 | 12..190 | 358 | 41.7 | Plus |
ben-PE | 151 | CG18319-PE | 6..133 | 16..141 | 213 | 36.2 | Plus |