Clone BO16202 Report

Search the DGRC for BO16202

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG14739-RA
Protein status:BO16202.pep: Imported from assembly
Sequenced Size:652

Clone Sequence Records

BO16202.3prime Sequence

650 bp (650 high quality bases) assembled on 2006-10-13

> BO16202.3prime
ATGGTCTAGAAAGCTTGCGCTTGATCCTGGCAGGGCAATGTGTGCGTTGT
TCCTGTTTCCAACATCGTCATCATCCGAGTCCGTTAGCAGGTCGGATAGA
CTGAGATCCGAGGAGCGTTTCTCGAGGCCCTCCTCCACCAGTTGTCGCGT
CGGAAGGTTGGCGGGCATGGCGTACGTCTTCATGCAAAGGATAACGTGCT
CGCGAAAGAGTTGCTCCGAGTGTTTCATGATGGCGGCGGCCCGGTGATTC
AGTGAGTCGTGCGGATTCGGGTAACGCAGCAGCTGCGGCAGAAAGGTTTC
GAATATGTTGACCAGGTCATAGCTGGATGACCAAGCCTGCTTAAGGACAT
TCATGCAGACCAGGCCCGTGATGAACTCGATGTTTGGGTGCAGGATCTTG
GTGACAAAGCGAACGCGCGGTGCCGTCAACGGATAGTCCTGCGGCATGGT
CACATTTACCGTCCAAATGCCACCCTCGTAGGCACTGCCCAGTGGACCCT
CGAGGCAAACATTCAGGTTGGTCATGTCGTCGTCCACGGTGGTGCGGTAG
CCCGACGCCAACAGCCGGTTAACATCCCGGTCCAGACGGCGCCCCGCCAT
CGGCAACGTCGTGTTCACCAGCAACTGCTCGGCCATGTCGACTGATAACT

BO16202.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-PA 621 CG14739-RA 1..618 636..19 3040 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-RA 902 CG14739-RA 183..800 636..19 3060 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12048355..12048972 19..636 3060 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 17:21:26 has no hits.

BO16202.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:11 Download gff for BO16202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-PA 1..621 18..636 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:53:40 Download gff for BO16202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..804 13..636 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:36 Download gff for BO16202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..804 13..636 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:36 Download gff for BO16202.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12048351..12048972 13..636 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:53:40 Download gff for BO16202.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7874073..7874694 13..636 99   Plus

BO16202.5prime Sequence

650 bp (650 high quality bases) assembled on 2006-10-13

> BO16202.5prime
GAAGTTATCAGTCGACATGGCCGAGCAGTTGCTGGTGAACACGACGTTGC
CGATGGCGGGGCGCCGTCTGGACCGGGATGTTAACCGGCTGTTGGCGTCG
GGCTACCGCACCACCGTGGACGACGACATGACCAACCTGAATGTTTGCCT
CGAGGGTCCACTGGGCAGTGCCTACGAGGGTGGCATTTGGACGGTAAATG
TGACCATGCCGCAGGACTATCCGTTGACGGCACCGCGCGTTCGCTTTGTC
ACCAAGATCCTGCACCCAAACATCGAGTTCATCACGGGCCTGGTCTGCAT
GAATGTCCTTAAGCAGGCTTGGTCATCCAGCTATGACCTGGTCAACATAT
TCGAAACCTTTCTGCCGCAGCTGCTGCGTTACCCGAATCCGCACGACTCA
CTGAATCACCGGGCCGCCGCCATCATGAAACACTCGGAGCAACTCTTTCG
CGAGCACGTTATCCTTTGCATGAAGACGTACGCCATGCCCGCCAACCTTC
CGACGCGACAACTGGTGGAGGAGGGCCTCGAGAAACGCTCCTCGGATCTC
AGTCTATCCGACCTGCTAACGGACTCGGATGATGACGATGTTGGAAACAG
GAACAACGCACACATTGCCCTGCCAGGATCAAGCGCAAGCTTTCTAGACC

BO16202.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-PA 621 CG14739-RA 1..618 17..634 3040 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-RA 902 CG14739-RA 183..800 17..634 3060 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12048355..12048972 634..17 3060 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 11:50:00 has no hits.

BO16202.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:12 Download gff for BO16202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-PA 1..621 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:22:20 Download gff for BO16202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..804 17..640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:51:59 Download gff for BO16202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..804 17..640 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:51:59 Download gff for BO16202.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12048351..12048972 17..640 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:22:20 Download gff for BO16202.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7874073..7874694 17..640 99   Minus

BO16202.complete Sequence

652 bp assembled on 2011-06-28

GenBank Submission: KX796268

> BO16202.complete
GAAGTTATCAGTCGACATGGCCGAGCAGTTGCTGGTGAACACGACGTTGC
CGATGGCGGGGCGCCGTCTGGACCGGGATGTTAACCGGCTGTTGGCGTCG
GGCTACCGCACCACCGTGGACGACGACATGACCAACCTGAATGTTTGCCT
CGAGGGTCCACTGGGCAGTGCCTACGAGGGTGGCATTTGGACGGTAAATG
TGACCATGCCGCAGGACTATCCGTTGACGGCACCGCGCGTTCGCTTTGTC
ACCAAGATCCTGCACCCAAACATCGAGTTCATCACGGGCCTGGTCTGCAT
GAATGTCCTTAAGCAGGCTTGGTCATCCAGCTATGACCTGGTCAACATAT
TCGAAACCTTTCTGCCGCAGCTGCTGCGTTACCCGAATCCGCACGACTCA
CTGAATCACCGGGCCGCCGCCATCATGAAACACTCGGAGCAACTCTTTCG
CGAGCACGTTATCCTTTGCATGAAGACGTACGCCATGCCCGCCAACCTTC
CGACGCGACAACTGGTGGAGGAGGGCCTCGAGAAACGCTCCTCGGATCTC
AGTCTATCCGACCTGCTAACGGACTCGGATGATGACGATGTTGGAAACAG
GAACAACGCACACATTGCCCTGCCAGGATCAAGCGCAAGCTTTCTAGACC
AT

BO16202.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-RA 621 CG14739-PA 1..618 17..634 3060 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-RA 902 CG14739-RA 183..800 17..634 3060 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12048355..12048972 634..17 3060 99.7 Minus
Blast to na_te.dros performed on 2014-11-26 16:21:17 has no hits.

BO16202.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:37 Download gff for BO16202.complete
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..800 17..636 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:41 Download gff for BO16202.complete
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..800 17..636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:05 Download gff for BO16202.complete
Subject Subject Range Query Range Percent Splice Strand
CG14739-RA 183..800 17..636 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:05 Download gff for BO16202.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12048351..12048972 17..636 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:41 Download gff for BO16202.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7874073..7874694 17..636 99   Minus

BO16202.pep Sequence

Translation from 16 to 652

> BO16202.pep
MAEQLLVNTTLPMAGRRLDRDVNRLLASGYRTTVDDDMTNLNVCLEGPLG
SAYEGGIWTVNVTMPQDYPLTAPRVRFVTKILHPNIEFITGLVCMNVLKQ
AWSSSYDLVNIFETFLPQLLRYPNPHDSLNHRAAAIMKHSEQLFREHVIL
CMKTYAMPANLPTRQLVEEGLEKRSSDLSLSDLLTDSDDDDVGNRNNAHI
ALPGSSASFLDH

BO16202.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14739-PA 206 CG14739-PA 1..206 1..206 1075 100 Plus
UbcE2H-PB 183 CG2257-PB 4..180 12..190 358 41.7 Plus
UbcE2H-PC 183 CG2257-PC 4..180 12..190 358 41.7 Plus
UbcE2H-PA 183 CG2257-PA 4..180 12..190 358 41.7 Plus
ben-PE 151 CG18319-PE 6..133 16..141 213 36.2 Plus