Clone Sequence Records
BO16203.3prime Sequence
884 bp (851 high quality bases) assembled on 2006-10-13
> BO16203.3prime
ATGGTCTAGAAAGCTTGCATAGGTTCCGGCATTCATGGCCTTCACATCCA
GTTTTTGCTGATAGGCCAGTCTCTGAAGAATCGTGGGATGAGTGTGATGC
CATCGAGCATAGCATTGGTCGTAGACCGGAAAACTCATATGATCCGCATA
AATCTTGACCAGCGCCATCCTCAGTTGGATGGAGTATCCCATGCGATGGG
CAAATTTATCGGCGGCATACTCAAAGCGACGCAGATTCCACAGCATCAAG
ACATTGGCCAACGTGAGATAAGGAGTCAGGGCAAATTTCAGAACAATGAT
GAAACCCACTATGATGGGCATAACGCCAGGCTCGAAACCCACTGCCATGT
ATAGCTGGGGAGAGTGAAAGAACAATCCGAACAGTCCCATGGTGATAAAG
AAGTGAATCTTCATGATGATCGTAGCCTTGTAGAAATGTCCGTGCTTCCA
GTGACCCAACTCGTGACACACCACGCCCGCCACCTGGATGTTGGTCAGAC
CTCTGCCCACCTCATAGGGATGGATCTCATTGGGTTCCTTGCCCTTGTTC
AATAGCAAGGTATCAAAAATTACAATTCTTTTCAGGCAGCAGCTCCCGTA
AAAGTAGGCATTACTATACTGCATTGTCCGGGTCTTTATGATAAATACCC
TCTTCATGGGGAAGCCAACCACATCGCAAACACGCTTCACCTCCATATAG
AGGGCAGTGCCCTCTGGTAAAACCACCTGTCGTCCAATGCACGGAATGCA
GCAGTAGGGCAAAAAAAATACCAGCAACAGGGTGAACGTAGCCCAGAACA
GCCAGAACCAAAGGAAGAAGTAGTACCCAATGAACTTTACGCTGAACACA
ATGGCCGCCGCCAACGGGAACAGGACGAGCTGGC
BO16203.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9002-PA | 1371 | CG9002-RA | 503..1368 | 884..19 | 4130 | 99 | Minus |
| CG9002-PB | 1371 | CG9002-RB | 503..1368 | 884..19 | 4130 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 2251 | CG9002-RC | 527..1392 | 884..19 | 4210 | 99.1 | Minus |
| ste24c-RD | 1716 | CG9002-RD | 527..1392 | 884..19 | 4210 | 99.1 | Minus |
| ste24c-RA | 2228 | CG9002-RA | 527..1392 | 884..19 | 4210 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16997144..16998009 | 19..884 | 4210 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:53:57 has no hits.
BO16203.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:13 Download gff for
BO16203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-PB | 503..1371 | 15..884 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:23 Download gff for
BO16203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 527..1398 | 12..884 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:48 Download gff for
BO16203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 527..1398 | 12..884 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:48 Download gff for
BO16203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16997138..16998009 | 12..884 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:23 Download gff for
BO16203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12884643..12885514 | 12..884 | 98 | | Plus |
BO16203.5prime Sequence
854 bp (798 high quality bases) assembled on 2006-10-13
> BO16203.5prime
GAAGTTATCAGTCGACATGGCATTCTACGATACTTGGCCGAAAGTAGATC
CAATCATAGTGCTGGTGGTGTTATGTCTGATCGTGTTAGTTGACCGGATA
TGGGAGATGATACTCACCAAGAGGCAGCAATTGGTGTGCCTGAATGCGAT
TATGGTGCCGGAGGAGTTGAGAGGAATCATTCCGCCGGAGATTTACCATC
GGGCCCGCATCTACGAGCTGCATAAAACGGAGCTACAGATATGGAAGTAC
CTCATCGACTTGATTATTACGCTCTGTGAGCTGATATTGGGCTTCTATCC
ATTCCTCTGGAGCTTGTCTGCGAAGACTCTACAGAAAATAACCTCCCAAG
AGATCTGGATAACCTTGATCTTTGTTTTCTACCTGACCATTTACATTTGT
ATAAGGTTCCTGCCGGTTCTGATCTATGACAAGTGCCTGCTGGAGTTGCG
ATATGGGATGTCGGGCAAGTTTCCTTGGTACCTCTACTGCTGCATTGGAG
CAATGTCCATTCTCCTAAGCCAGCTCGTCCTGTTCCCGTTGGCGGCGGCC
ATTGTGTTCAGCGTAAAGTTCATTGGGTACTACTTCTTCCTTTGGTTCTG
GCTGTTCTGGGCTACGTTCACCCTGTTGCTGGTATTTTTTTTGCCCTACT
GCTGCATTCCGTGCATTGGACGACAGGTGGTTTTACCAGAGGGCACTGCC
CTCTATATGGAGGTGAAGCGTGTTTGCGATGTGGTTGGCTTCCCCATGAA
GAGGGTATTTATCATAAAGACCCGGACAATGCAGTATAGTAATGCCTACT
TTTACGGGAGCTGCTGCCTGAAAAGAATTGTAATTTTTGATACCTTGCTA
TTGA
BO16203.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9002-PA | 1371 | CG9002-RA | 1..838 | 17..854 | 4165 | 99.8 | Plus |
| CG9002-PB | 1371 | CG9002-RB | 1..838 | 17..854 | 4165 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 2251 | CG9002-RC | 25..862 | 17..854 | 4175 | 99.9 | Plus |
| ste24c-RD | 1716 | CG9002-RD | 25..862 | 17..854 | 4175 | 99.9 | Plus |
| ste24c-RA | 2228 | CG9002-RA | 25..862 | 17..854 | 4175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16997674..16998403 | 854..125 | 3635 | 99.9 | Minus |
| 2R | 25286936 | 2R | 16998460..16998570 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:15:13 has no hits.
BO16203.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:14 Download gff for
BO16203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-PB | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:44 Download gff for
BO16203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..861 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:54 Download gff for
BO16203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..861 | 17..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:54 Download gff for
BO16203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16997675..16998400 | 128..853 | 99 | <- | Minus |
| 2R | 16998460..16998570 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:44 Download gff for
BO16203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12885180..12885905 | 128..853 | 99 | <- | Minus |
| arm_2R | 12885965..12886075 | 17..127 | 100 | | Minus |
BO16203.complete Sequence
1402 bp assembled on 2006-10-11
GenBank Submission: FJ633729
> BO16203.complete
GAAGTTATCAGTCGACATGGCATTCTACGATACTTGGCCGAAAGTAGATC
CAATCATAGTGCTGGTGGTGTTATGTCTGATCGTGTTAGTTGACCGGATA
TGGGAGATGATACTCACCAAGAGGCAGCAATTGGTGTGCCTGAATGCGAT
TATGGTGCCGGAGGAGTTGAGAGGAATCATTCCGCCGGAGATTTACCATC
GGGCCCGCATCTACGAGCTGCATAAAACGGAGCTACAGATATGGAAGTAC
CTCATCGACTTGATTATTACGCTCTGTGAGCTGATATTGGGCTTCTATCC
ATTCCTCTGGAGCTTGTCTGCGAAGACTCTACAGAAAATAACCTCCCAAG
AGATCTGGATAACCTTGATCTTTGTTTTCTACCTGACCATTTACATTTGT
ATAAGGTTCCTGCCGGTTCTGATCTATGACAAGTGCCTGCTGGAGTTGCG
ATATGGGATGTCGGGCAAGTTTCCTTGGTACCTCTACTGCTGCATTGGAG
CAATGTCCATTCTCCTAAGCCAGCTCGTCCTGTTCCCGTTGGCGGCGGCC
ATTGTGTTCAGCGTAAAGTTCATTGGGTACTACTTCTTCCTTTGGTTCTG
GCTGTTCTGGGCTACGTTCACCCTGTTGCTGGTATTTTTTTTGCCCTACT
GCTGCATTCCGTGCATTGGACGACAGGTGGTTTTACCAGAGGGCACTGCC
CTCTATATGGAGGTGAAGCGTGTTTGCGATGTGGTTGGCTTCCCCATGAA
GAGGGTATTTATCATAAAGACCCGGACAATGCAGTATAGTAATGCCTACT
TTTACGGGAGCTGCTGCCTGAAAAGAATTGTAATTTTTGATACCTTGCTA
TTGAACAAGGGCAAGGAACCCAATGAGATCCATCCCTATGAGGTGGGCAG
AGGTCTGACCAACATCCAGGTGGCGGGCGTGGTGTGTCACGAGTTGGGTC
ACTGGAAGCACGGACATTTCTACAAGGCTACGATCATCATGAAGATTCAC
TTCTTTATCACCATGGGACTGTTCGGATTGTTCTTTCACTCTCCCCAGCT
ATACATGGCAGTGGGTTTCGAGCCTGGCGTTATGCCCATCATAGTGGGTT
TCATCATTGTTCTGAAATTTGCCCTGACTCCTTATCTCACGTTGGCCAAT
GTCTTGATGCTGTGGAATCTGCGTCGCTTTGAGTATGCCGCCGATAAATT
TGCCCATCGCATGGGATACTCCATCCAACTGAGGATGGCGCTGGTCAAGA
TTTATGCGGATCATATGAGTTTTCCGGTCTACGACCAATGCTATGCTCGA
TGGCATCACACTCATCCCACGATTCTTCAGAGACTGGCCTATCAGCAAAA
ACTGGATGTGAAGGCCATGAATGCCGGAACCTATGCAAGCTTTCTAGACC
AT
BO16203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 1371 | CG9002-PC | 1..1368 | 17..1384 | 6705 | 99.3 | Plus |
| ste24c-RD | 1371 | CG9002-PD | 1..1368 | 17..1384 | 6705 | 99.3 | Plus |
| ste24c-RA | 1371 | CG9002-PA | 1..1368 | 17..1384 | 6705 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 2251 | CG9002-RC | 25..1392 | 17..1384 | 6705 | 99.3 | Plus |
| ste24c-RD | 1716 | CG9002-RD | 25..1392 | 17..1384 | 6705 | 99.3 | Plus |
| ste24c-RA | 2228 | CG9002-RA | 25..1392 | 17..1384 | 6705 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16997144..16998403 | 1384..125 | 6165 | 99.3 | Minus |
| 2R | 25286936 | 2R | 16998460..16998570 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:30:39 has no hits.
BO16203.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:55 Download gff for
BO16203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-RB | 1..1371 | 17..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:06 Download gff for
BO16203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-RB | 25..1395 | 17..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:58 Download gff for
BO16203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..1392 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:56 Download gff for
BO16203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9002-RB | 25..1395 | 17..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:43 Download gff for
BO16203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RA | 25..1392 | 17..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:43 Download gff for
BO16203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16997142..16998400 | 128..1386 | 99 | <- | Minus |
| 2R | 16998460..16998570 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:58 Download gff for
BO16203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12884647..12885905 | 128..1386 | 99 | <- | Minus |
| arm_2R | 12885965..12886075 | 17..127 | 100 | | Minus |
BO16203.pep Sequence
Translation from 16 to 1402
> BO16203.pep
MAFYDTWPKVDPIIVLVVLCLIVLVDRIWEMILTKRQQLVCLNAIMVPEE
LRGIIPPEIYHRARIYELHKTELQIWKYLIDLIITLCELILGFYPFLWSL
SAKTLQKITSQEIWITLIFVFYLTIYICIRFLPVLIYDKCLLELRYGMSG
KFPWYLYCCIGAMSILLSQLVLFPLAAAIVFSVKFIGYYFFLWFWLFWAT
FTLLLVFFLPYCCIPCIGRQVVLPEGTALYMEVKRVCDVVGFPMKRVFII
KTRTMQYSNAYFYGSCCLKRIVIFDTLLLNKGKEPNEIHPYEVGRGLTNI
QVAGVVCHELGHWKHGHFYKATIIMKIHFFITMGLFGLFFHSPQLYMAVG
FEPGVMPIIVGFIIVLKFALTPYLTLANVLMLWNLRRFEYAADKFAHRMG
YSIQLRMALVKIYADHMSFPVYDQCYARWHHTHPTILQRLAYQQKLDVKA
MNAGTYASFLDH
BO16203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-PC | 456 | CG9002-PC | 1..456 | 1..456 | 2452 | 100 | Plus |
| ste24c-PD | 456 | CG9002-PD | 1..456 | 1..456 | 2452 | 100 | Plus |
| ste24c-PA | 456 | CG9002-PA | 1..456 | 1..456 | 2452 | 100 | Plus |
| ste24b-PA | 447 | CG9001-PA | 8..440 | 11..441 | 840 | 38.6 | Plus |
| ste24a-PA | 451 | CG9000-PA | 4..438 | 10..440 | 763 | 37.1 | Plus |
