Clone Sequence Records
BO16204.3prime Sequence
605 bp (605 high quality bases) assembled on 2006-10-13
> BO16204.3prime
ATGGTCTAGAAAGCTTGCGGCTTCTAACATCTCGAGATCCTCGACCCCCA
TTCCCTCCTCCAGTTTCTTCTCGAGTTCGCGTGCATCCACGTAGGTGATC
TTCTCCTCGGGCAGATCCTCCTCCATGAGGGCGGCCTCCTCTGCCGCCTC
CTGGGCACGTCGTTGCTTCAGCCCTGCGGCTGGGGAGCGAATCAGGGACA
TGTTGCGCTGCACATCCTTGACGTCCATCTGAATCTCGACCTGGCGACCC
TTGCGCAGTCGCTCCATGACAAAGTGGCTGGTGCGTTTCTCCTTAATCTC
CGTCACCCGCTTGATGGCCTCCAGACCCTTCTGCCAGGTCTCGCGGCTGT
ATTTCATGGGCACGTTGCGGCGCTTCTCGAACTCGAAACTGGGATCGATG
GCCAGCTCCTTGCCGGCGGCCTTGCGGTACGCCTTCGTCCATCCTACCTT
GCGGGGATTCTTCTTGCGCTTAAAGGCCTTGTGACACTTGCCTCGGCAGA
ACTTGAAGACCTTGCAGTCATTTCGCACGAATTGCACCCCGTGGCCCGGG
TATATTTTGCTAGAGCAAAAATAGCACGTTTGAATGCGCATGTCGACTGA
TAACT
BO16204.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6764-PA | 576 | CG6764-RA | 1..573 | 591..19 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-like-RA | 773 | CG6764-RA | 94..666 | 591..19 | 2865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11430847..11431340 | 19..512 | 2470 | 100 | Plus |
| 3R | 32079331 | 3R | 11431407..11431489 | 509..591 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:25:15 has no hits.
BO16204.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:14 Download gff for
BO16204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6764-PA | 1..576 | 15..591 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:26 Download gff for
BO16204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-like-RA | 94..670 | 14..591 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:20 Download gff for
BO16204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-like-RA | 94..670 | 14..591 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:20 Download gff for
BO16204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11430843..11431338 | 14..510 | 99 | <- | Plus |
| 3R | 11431409..11431489 | 511..591 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:26 Download gff for
BO16204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7256565..7257060 | 14..510 | 99 | <- | Plus |
| arm_3R | 7257131..7257211 | 511..591 | 100 | | Plus |
BO16204.5prime Sequence
605 bp (605 high quality bases) assembled on 2006-10-13
> BO16204.5prime
GAAGTTATCAGTCGACATGCGCATTCAAACGTGCTATTTTTGCTCTAGCA
AAATATACCCGGGCCACGGGGTGCAATTCGTGCGAAATGACTGCAAGGTC
TTCAAGTTCTGCCGAGGCAAGTGTCACAAGGCCTTTAAGCGCAAGAAGAA
TCCCCGCAAGGTAGGATGGACGAAGGCGTACCGCAAGGCCGCCGGCAAGG
AGCTGGCCATCGATCCCAGTTTCGAGTTCGAGAAGCGCCGCAACGTGCCC
ATGAAATACAGCCGCGAGACCTGGCAGAAGGGTCTGGAGGCCATCAAGCG
GGTGACGGAGATTAAGGAGAAACGCACCAGCCACTTTGTCATGGAGCGAC
TGCGCAAGGGTCGCCAGGTCGAGATTCAGATGGACGTCAAGGATGTGCAG
CGCAACATGTCCCTGATTCGCTCCCCAGCCGCAGGGCTGAAGCAACGACG
TGCCCAGGAGGCGGCAGAGGAGGCCGCCCTCATGGAGGAGGATCTGCCCG
AGGAGAAGATCACCTACGTGGATGCACGCGAACTCGAGAAGAAACTGGAG
GAGGGAATGGGGGTCGAGGATCTCGAGATGTTAGAAGCCGCAAGCTTTCT
AGACC
BO16204.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6764-PA | 576 | CG6764-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-like-RA | 773 | CG6764-RA | 94..666 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11430847..11431340 | 589..96 | 2470 | 100 | Minus |
| 3R | 32079331 | 3R | 11431407..11431489 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:34:57 has no hits.
BO16204.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:15 Download gff for
BO16204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6764-PA | 1..576 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:55 Download gff for
BO16204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-like-RA | 94..670 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:17 Download gff for
BO16204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-like-RA | 94..670 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:17 Download gff for
BO16204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11430843..11431338 | 98..594 | 99 | <- | Minus |
| 3R | 11431409..11431489 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:55 Download gff for
BO16204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7256565..7257060 | 98..594 | 99 | <- | Minus |
| arm_3R | 7257131..7257211 | 17..97 | 100 | | Minus |
BO16204.complete Sequence
607 bp assembled on 2006-10-11
GenBank Submission: FJ633730
> BO16204.complete
GAAGTTATCAGTCGACATGCGCATTCAAACGTGCTATTTTTGCTCTAGCA
AAATATACCCGGGCCACGGGGTGCAATTCGTGCGAAATGACTGCAAGGTC
TTCAAGTTCTGCCGAGGCAAGTGTCACAAGGCCTTTAAGCGCAAGAAGAA
TCCCCGCAAGGTAGGATGGACGAAGGCGTACCGCAAGGCCGCCGGCAAGG
AGCTGGCCATCGATCCCAGTTTCGAGTTCGAGAAGCGCCGCAACGTGCCC
ATGAAATACAGCCGCGAGACCTGGCAGAAGGGTCTGGAGGCCATCAAGCG
GGTGACGGAGATTAAGGAGAAACGCACCAGCCACTTTGTCATGGAGCGAC
TGCGCAAGGGTCGCCAGGTCGAGATTCAGATGGACGTCAAGGATGTGCAG
CGCAACATGTCCCTGATTCGCTCCCCAGCCGCAGGGCTGAAGCAACGACG
TGCCCAGGAGGCGGCAGAGGAGGCCGCCCTCATGGAGGAGGATCTGCCCG
AGGAGAAGATCACCTACGTGGATGCACGCGAACTCGAGAAGAAACTGGAG
GAGGGAATGGGGGTCGAGGATCTCGAGATGTTAGAAGCCGCAAGCTTTCT
AGACCAT
BO16204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-like-RA | 576 | CG6764-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-like-RA | 773 | CG6764-RA | 94..666 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11430847..11431340 | 589..96 | 2470 | 100 | Minus |
| 3R | 32079331 | 3R | 11431407..11431489 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:37:44 has no hits.
BO16204.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:20 Download gff for
BO16204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6764-RA | 1..576 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:31 Download gff for
BO16204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6764-RA | 187..763 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:20 Download gff for
BO16204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-like-RA | 94..666 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:21 Download gff for
BO16204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6764-RA | 187..763 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:15 Download gff for
BO16204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL24-like-RA | 94..666 | 17..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:15 Download gff for
BO16204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11430845..11431338 | 98..591 | 99 | <- | Minus |
| 3R | 11431409..11431489 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:20 Download gff for
BO16204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7256567..7257060 | 98..591 | 99 | <- | Minus |
| arm_3R | 7257131..7257211 | 17..97 | 100 | | Minus |
BO16204.pep Sequence
Translation from 16 to 607
> BO16204.pep
MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVG
WTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIK
EKRTSHFVMERLRKGRQVEIQMDVKDVQRNMSLIRSPAAGLKQRRAQEAA
EEAALMEEDLPEEKITYVDARELEKKLEEGMGVEDLEMLEAASFLDH
BO16204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL24-like-PA | 191 | CG6764-PA | 1..191 | 1..191 | 994 | 100 | Plus |
| RpL24-PC | 155 | CG9282-PC | 1..142 | 1..151 | 172 | 30.5 | Plus |
| RpL24-PB | 155 | CG9282-PB | 1..142 | 1..151 | 172 | 30.5 | Plus |
| RpL24-PA | 155 | CG9282-PA | 1..142 | 1..151 | 172 | 30.5 | Plus |
