Clone Sequence Records
BO16207.3prime Sequence
764 bp (685 high quality bases) assembled on 2006-10-13
> BO16207.3prime
ATGGTCTAGAAAGCTTGCATACATGAAAAGCAAGTCAAAGTTCTTCTTGC
CATCGCCCAAGTAAAGGAAACCATGCTTGTGGGAGTTGATTTTGTGAAAG
AATGTCATGCCCAACCAAAGGCACGACTTGATTATTACCAAACCCTCGTT
CCGTTGCATATTCAGGGCAAAAGCCTGACACAGTGGTATTACGCAGTCAA
TGGTGTCCAGAAAGTCAATAGCATAGTTATAGTCGCTCCTCTTGGCCAAA
TTGACTTTGAGATCATTGCGGGGCAGGCGATAGAGCTGGTAATATGATTG
GTTGTCGATCTGCAAGTCATTCAGTCCACGAAACATCTGGTTGGGTATAA
CACGACCATCGGTCATCTTGTAAAAGGCTCCGCGTGGGCAAATGGCACAC
TCCTCTGTTATAATAAACACAATGGCTGCCAGCCGTTCCTCCTCCTTAAG
CTTGACCACTTCAGGGCGGCTGATACCAGCCACCTGATTGCCTACGATGT
CAAAAGTGGGGTCCAGCTTAACGTAGGTCATCAGGCTGGGATCTCCTATA
AATGGCTCCCTTGCCAATATAGTCGCCTGAAATATCTTGGGGCTCTGTAC
GAACGGCAGCAACTGCCATTGGAACTGGTCCAGACTGTAGAAATACTTGC
GATCCTTGAGACAGTCATTAGTGTAGCCAAAGGCAATGTAGTAATCGTTC
TTGGTGGCCGTAATGCGACCCCAAAGATACATGCCCGTAAAACGATTTGT
CATTTTGTAAAGCG
BO16207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-PA | 846 | CG31803-RA | 115..843 | 747..19 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-RA | 929 | CG31803-RA | 145..889 | 764..19 | 3705 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17411689..17412184 | 19..514 | 2480 | 100 | Plus |
| 2L | 23513712 | 2L | 17412239..17412489 | 513..764 | 1210 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:02:16 has no hits.
BO16207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:19 Download gff for
BO16207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-PA | 99..846 | 15..764 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:17 Download gff for
BO16207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 145..899 | 8..764 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:36 Download gff for
BO16207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 145..899 | 8..764 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:36 Download gff for
BO16207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17411679..17412183 | 8..513 | 99 | <- | Plus |
| 2L | 17412240..17412489 | 514..764 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:17 Download gff for
BO16207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17411679..17412183 | 8..513 | 99 | <- | Plus |
| arm_2L | 17412240..17412489 | 514..764 | 99 | | Plus |
BO16207.5prime Sequence
870 bp (823 high quality bases) assembled on 2006-10-13
> BO16207.5prime
GAAGTTATCAGTCGACATGAATTTGGAGTTCTTCACCGAGGGCCTCGACT
GCCTAATGTACTGCGGCATGAAGCTGTCGCCGGAGCAGCGCATCTTGATT
GAAAACTCGCTGATCGCTTTACAAAATGACAATCGTTTTACGGGCATGTA
TCTTTGGGGTCGCATTACGGCCACCAAGAACGATTACTACATTGCCTTTG
GCTACACTAATGACTGTCTCAAGGATCGCAAGTATTTCTACAGTCTGGAC
CAGTTCCAATGGCAGTTGCTGCCGTTCGTACAGAGCCCCAAGATATTTCA
GGCGACTATATTGGCAAGGGAGCCATTTATAGGAGATCCCAGCCTGATGA
CCTACGTTAAGCTGGACCCCACTTTTGACATCGTAGGCAATCAGGTGGCT
GGTATCAGCCGCCCTGAAGTGGTCAAGCTTAAGGAGGAGGAACGGCTGGC
AGCCATTGTGTTTATTATAACAGAGGAGTGTGCCATTTGCCCACGCGGAG
CCTTTTACAAGATGACCGATGGTCGTGTTATACCCAACCAGATGTTTCGT
GGACTGAATGACTTGCAGATCGACAACCAATCATATTACCAGCTCTATCG
CCTGCCCCGCAATGATCTCAAAGTCAATTTGGCCAAGAGGAGCGACTATA
ACTATGCTATTGACTTTCTGGACACCATTGACTGCGTAATACCACTGTGT
CAGGCTTTTGCCCTGAATATGCAACGGAACGAGGGTTTGGTAATAATCAA
GTCGTGCCTTTGGTTGGGCATGACATTCTTTCACAAAATCAACTCCCACA
AGCATGGTTTCCTTTACTTGGGCGATGGCAAGAAGAACTTTGACTTGCTT
TTCATGTATGCAAGCTTTCT
BO16207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-PA | 846 | CG31803-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-RA | 929 | CG31803-RA | 42..889 | 12..859 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17411689..17412184 | 859..364 | 2480 | 100 | Minus |
| 2L | 23513712 | 2L | 17412239..17412592 | 365..12 | 1755 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:05:30 has no hits.
BO16207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:20 Download gff for
BO16207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-PA | 1..846 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:41 Download gff for
BO16207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 33..899 | 2..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:25 Download gff for
BO16207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 33..899 | 2..870 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:25 Download gff for
BO16207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17411679..17412183 | 365..870 | 99 | <- | Minus |
| 2L | 17412240..17412601 | 2..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:41 Download gff for
BO16207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17411679..17412183 | 365..870 | 99 | <- | Minus |
| arm_2L | 17412240..17412601 | 2..364 | 98 | | Minus |
BO16207.complete Sequence
877 bp assembled on 2006-10-11
GenBank Submission: FJ633731
> BO16207.complete
GAAGTTATCAGTCGACATGAATTTGGAGTTCTTCACCGAGGGCCTCGACT
GCCTAATGTACTGCGGCATGAAGCTGTCGCCGGAGCAGCGCATCTTGATT
GAAAACTCGCTGATCGCTTTACAAAATGACAATCGTTTTACGGGCATGTA
TCTTTGGGGTCGCATTACGGCCACCAAGAACGATTACTACATTGCCTTTG
GCTACACTAATGACTGTCTCAAGGATCGCAAGTATTTCTACAGTCTGGAC
CAGTTCCAATGGCAGTTGCTGCCGTTCGTACAGAGCCCCAAGATATTTCA
GGCGACTATATTGGCAAGGGAGCCATTTATAGGAGATCCCAGCCTGATGA
CCTACGTTAAGCTGGACCCCACTTTTGACATCGTAGGCAATCAGGTGGCT
GGTATCAGCCGCCCTGAAGTGGTCAAGCTTAAGGAGGAGGAACGGCTGGC
AGCCATTGTGTTTATTATAACAGAGGAGTGTGCCATTTGCCCACGCGGAG
CCTTTTACAAGATGACCGATGGTCGTGTTATACCCAACCAGATGTTTCGT
GGACTGAATGACTTGCAGATCGACAACCAATCATATTACCAGCTCTATCG
CCTGCCCCGCAATGATCTCAAAGTCAATTTGGCCAAGAGGAGCGACTATA
ACTATGCTATTGACTTTCTGGACACCATTGACTGCGTAATACCACTGTGT
CAGGCTTTTGCCCTGAATATGCAACGGAACGAGGGTTTGGTAATAATCAA
GTCGTGCCTTTGGTTGGGCATGACATTCTTTCACAAAATCAACTCCCACA
AGCATGGTTTCCTTTACTTGGGCGATGGCAAGAAGAACTTTGACTTGCTT
TTCATGTATGCAAGCTTTCTAGACCAT
BO16207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-RA | 846 | CG31803-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-RA | 929 | CG31803-RA | 42..889 | 12..859 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17411689..17412184 | 859..364 | 2480 | 100 | Minus |
| 2L | 23513712 | 2L | 17412239..17412592 | 365..12 | 1755 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:33:31 has no hits.
BO16207.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:57 Download gff for
BO16207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 1..846 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:08 Download gff for
BO16207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 33..899 | 2..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:47 Download gff for
BO16207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 47..889 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:58 Download gff for
BO16207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 33..899 | 2..870 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:12 Download gff for
BO16207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31803-RA | 47..889 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:12 Download gff for
BO16207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17412240..17412587 | 17..364 | 100 | | Minus |
| 2L | 17411687..17412183 | 365..861 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:47 Download gff for
BO16207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17411687..17412183 | 365..861 | 99 | <- | Minus |
| arm_2L | 17412240..17412587 | 17..364 | 100 | | Minus |
BO16207.pep Sequence
Translation from 16 to 877
> BO16207.pep
MNLEFFTEGLDCLMYCGMKLSPEQRILIENSLIALQNDNRFTGMYLWGRI
TATKNDYYIAFGYTNDCLKDRKYFYSLDQFQWQLLPFVQSPKIFQATILA
REPFIGDPSLMTYVKLDPTFDIVGNQVAGISRPEVVKLKEEERLAAIVFI
ITEECAICPRGAFYKMTDGRVIPNQMFRGLNDLQIDNQSYYQLYRLPRND
LKVNLAKRSDYNYAIDFLDTIDCVIPLCQAFALNMQRNEGLVIIKSCLWL
GMTFFHKINSHKHGFLYLGDGKKNFDLLFMYASFLDH
BO16207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31803-PA | 281 | CG31803-PA | 1..281 | 1..281 | 1500 | 100 | Plus |
