Clone Sequence Records
BO16209.5prime Sequence
845 bp (788 high quality bases) assembled on 2006-10-13
> BO16209.5prime
GAAGTTATCAGTCGACATGTCTTCGGCGTTAATAAAATGTTTAAATTTGG
CAAAAACTGTGGGAAATGCGACAGTCAGGAGCTTTTTGGCAGCTCCCAAG
CAGCCATGGCAGTCGTGCAGTGCGGCTGCCCTGCAAACGCCGCATGTTCA
AATGCCGATGCAAATGCACACTTCCGCTGTTCGCCGGGATCTTATGGAGT
TCTTCGACGACAAGAAGAACTGGAGCGAGAATGAGGTGAAGGTGGGCCGC
GCCTGGCGGACGGAGGAGCTGCGTATCAAGTCCAACAAGGAGCTGCACCA
GCTGTGGTTCGTGCTCCTCAAGGAGCGCAACATGCTGCTGACCATGGAGC
ACGAGTGCAATGACAAAATGGAAGTCTTCCCTAGTCCGGAGCGCATCGAT
AAGGTGAAAATCTCCATGGAAAACCTGGAGACAGTAGTGAGGGAGCGGAA
CAAGGCGTATCACCTGCTGGAAACAGGTGAAACGGGTGAACGGCCCCAGA
AGGCGGTGAAGAACGCATTTGGCCTGCAGGTCTCATACAAAGCATGCGAA
CACGCCCTGCCGCCCTTCATGAACCTCAAATGGATTAAATCCCGCAACAT
TGGCTACGGCGGCAGAGCTGTGAACAGATTCCTCTTAAAGTACAGGGAGA
AACTCTACAATGCCAAGCGCAAGGCCAAGAACCGCTCCCGCAACGAAGTC
ATGATGATCCTGCGTCGCAACCCCAATTTCGATCTGGATGTGCTGCGTCG
CCAGTTCCCCGATGTCAACGTGGACAAGCTGCGCAACGAGGACAAGATTC
GTGGTCACTATGTGCCCAAAGTTGGCGTGGCAAGCTTTCTAGACC
BO16209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9378-PB | 816 | Rlc1-RB | 1..813 | 17..829 | 4065 | 100 | Plus |
CG9378-PA | 684 | Rlc1-RA | 1..665 | 17..681 | 3325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL47-RB | 905 | CG9378-RB | 43..855 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9515399..9515686 | 406..119 | 1440 | 100 | Minus |
3R | 32079331 | 3R | 9515073..9515352 | 681..402 | 1400 | 100 | Minus |
3R | 32079331 | 3R | 9514872..9515019 | 829..682 | 740 | 100 | Minus |
3R | 32079331 | 3R | 9515763..9515866 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 05:13:02 has no hits.
BO16209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:22 Download gff for
BO16209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9378-PB | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:15:24 Download gff for
BO16209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL47-RB | 43..860 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:27:40 Download gff for
BO16209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL47-RB | 43..860 | 17..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:27:40 Download gff for
BO16209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9514867..9515019 | 682..835 | 98 | <- | Minus |
3R | 9515073..9515350 | 404..681 | 100 | <- | Minus |
3R | 9515402..9515684 | 121..403 | 100 | <- | Minus |
3R | 9515763..9515866 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:15:24 Download gff for
BO16209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5340589..5340741 | 682..835 | 98 | <- | Minus |
arm_3R | 5340795..5341072 | 404..681 | 100 | <- | Minus |
arm_3R | 5341124..5341406 | 121..403 | 100 | <- | Minus |
arm_3R | 5341485..5341588 | 17..120 | 100 | | Minus |
BO16209.complete Sequence
847 bp assembled on 2007-03-22
GenBank Submission: FJ633732
> BO16209.complete
GAAGTTATCAGTCGACATGTCTTCGGCGTTAATAAAATGTTTAAATTTGG
CAAAAACTGTGGGAAATGCGACAGTCAGGAGCTTTTTGGCAGCTCCCAAG
CAGCCATGGCAGTCGTGCAGTGCGGCTGCCCTGCAAACGCCGCATGTTCA
AATGCCGATGCAAATGCACACTTCCGCTGTTCGCCGGGATCTTATGGAGT
TCTTCGACGACAAGAAGAACTGGAGCGAGAATGAGGTGAAGGTGGGCCGC
GCCTGGCGGACGGAGGAGCTGCGTATCAAGTCCAACAAGGAGCTGCACCA
GCTGTGGTTCGTGCTCCTCAAGGAGCGCAACATGCTGCTGACCATGGAGC
ACGAGTGCAATGACAAAATGGAAGTCTTCCCTAGTCCGGAGCGCATCGAT
AAGGTGAAAATCTCCATGGAAAACCTGGAGACAGTAGTGAGGGAGCGGAA
CAAGGCGTATCACCTGCTGGAAACAGGTGAAACGGGTGAACGGCCCCAGA
AGGCGGTGAAGAACGCATTTGGCCTGCAGGTCTCATACAAAGCATGCGAA
CACGCCCTGCCGCCCTTCATGAACCTCAAATGGATTAAATCCCGCAACAT
TGGCTACGGCGGCAGAGCTGTGAACAGATTCCTCTTAAAGTACAGGGAGA
AACTCTACAATGCCAAGCGCAAGGCCAAGAACCGCTCCCGCAACGAAGTC
ATGATGATCCTGCGTCGCAACCCCAATTTCGATCTGGATGTGCTGCGTCG
CCAGTTCCCCGATGTCAACGTGGACAAGCTGCGCAACGAGGACAAGATTC
GTGGTCACTATGTGCCCAAAGTTGGCGTGGCAAGCTTTCTAGACCAT
BO16209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL47-RB | 816 | CG9378-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL47-RB | 905 | CG9378-RB | 43..855 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9515399..9515686 | 406..119 | 1440 | 100 | Minus |
3R | 32079331 | 3R | 9515073..9515352 | 681..402 | 1400 | 100 | Minus |
3R | 32079331 | 3R | 9514872..9515019 | 829..682 | 740 | 100 | Minus |
3R | 32079331 | 3R | 9515763..9515866 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:03:37 has no hits.
BO16209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:37 Download gff for
BO16209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rlc1-RB | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:10 Download gff for
BO16209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rlc1-RB | 242..1059 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:44 Download gff for
BO16209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL47-RB | 43..855 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:37 Download gff for
BO16209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rlc1-RB | 242..1059 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:36 Download gff for
BO16209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL47-RB | 43..855 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:36 Download gff for
BO16209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9514869..9515019 | 682..831 | 98 | <- | Minus |
3R | 9515073..9515350 | 404..681 | 100 | <- | Minus |
3R | 9515402..9515684 | 121..403 | 100 | <- | Minus |
3R | 9515763..9515866 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:44 Download gff for
BO16209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5340591..5340741 | 682..831 | 98 | <- | Minus |
arm_3R | 5340795..5341072 | 404..681 | 100 | <- | Minus |
arm_3R | 5341124..5341406 | 121..403 | 100 | <- | Minus |
arm_3R | 5341485..5341588 | 17..120 | 100 | | Minus |
BO16209.pep Sequence
Translation from 16 to 847
> BO16209.pep
MSSALIKCLNLAKTVGNATVRSFLAAPKQPWQSCSAAALQTPHVQMPMQM
HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVL
LKERNMLLTMEHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHL
LETGETGERPQKAVKNAFGLQVSYKACEHALPPFMNLKWIKSRNIGYGGR
AVNRFLLKYREKLYNAKRKAKNRSRNEVMMILRRNPNFDLDVLRRQFPDV
NVDKLRNEDKIRGHYVPKVGVASFLDH
BO16209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL47-PB | 271 | CG9378-PB | 1..271 | 1..271 | 1422 | 100 | Plus |