Clone BO16209 Report

Search the DGRC for BO16209

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptRlc1-RB
Protein status:BO16209.pep: validated full length
Sequenced Size:847

Clone Sequence Records

BO16209.5prime Sequence

845 bp (788 high quality bases) assembled on 2006-10-13

> BO16209.5prime
GAAGTTATCAGTCGACATGTCTTCGGCGTTAATAAAATGTTTAAATTTGG
CAAAAACTGTGGGAAATGCGACAGTCAGGAGCTTTTTGGCAGCTCCCAAG
CAGCCATGGCAGTCGTGCAGTGCGGCTGCCCTGCAAACGCCGCATGTTCA
AATGCCGATGCAAATGCACACTTCCGCTGTTCGCCGGGATCTTATGGAGT
TCTTCGACGACAAGAAGAACTGGAGCGAGAATGAGGTGAAGGTGGGCCGC
GCCTGGCGGACGGAGGAGCTGCGTATCAAGTCCAACAAGGAGCTGCACCA
GCTGTGGTTCGTGCTCCTCAAGGAGCGCAACATGCTGCTGACCATGGAGC
ACGAGTGCAATGACAAAATGGAAGTCTTCCCTAGTCCGGAGCGCATCGAT
AAGGTGAAAATCTCCATGGAAAACCTGGAGACAGTAGTGAGGGAGCGGAA
CAAGGCGTATCACCTGCTGGAAACAGGTGAAACGGGTGAACGGCCCCAGA
AGGCGGTGAAGAACGCATTTGGCCTGCAGGTCTCATACAAAGCATGCGAA
CACGCCCTGCCGCCCTTCATGAACCTCAAATGGATTAAATCCCGCAACAT
TGGCTACGGCGGCAGAGCTGTGAACAGATTCCTCTTAAAGTACAGGGAGA
AACTCTACAATGCCAAGCGCAAGGCCAAGAACCGCTCCCGCAACGAAGTC
ATGATGATCCTGCGTCGCAACCCCAATTTCGATCTGGATGTGCTGCGTCG
CCAGTTCCCCGATGTCAACGTGGACAAGCTGCGCAACGAGGACAAGATTC
GTGGTCACTATGTGCCCAAAGTTGGCGTGGCAAGCTTTCTAGACC

BO16209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9378-PB 816 Rlc1-RB 1..813 17..829 4065 100 Plus
CG9378-PA 684 Rlc1-RA 1..665 17..681 3325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL47-RB 905 CG9378-RB 43..855 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9515399..9515686 406..119 1440 100 Minus
3R 32079331 3R 9515073..9515352 681..402 1400 100 Minus
3R 32079331 3R 9514872..9515019 829..682 740 100 Minus
3R 32079331 3R 9515763..9515866 120..17 520 100 Minus
Blast to na_te.dros performed on 2015-02-03 05:13:02 has no hits.

BO16209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:22 Download gff for BO16209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9378-PB 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:15:24 Download gff for BO16209.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL47-RB 43..860 17..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:27:40 Download gff for BO16209.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL47-RB 43..860 17..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:27:40 Download gff for BO16209.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9514867..9515019 682..835 98 <- Minus
3R 9515073..9515350 404..681 100 <- Minus
3R 9515402..9515684 121..403 100 <- Minus
3R 9515763..9515866 17..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:15:24 Download gff for BO16209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5340589..5340741 682..835 98 <- Minus
arm_3R 5340795..5341072 404..681 100 <- Minus
arm_3R 5341124..5341406 121..403 100 <- Minus
arm_3R 5341485..5341588 17..120 100   Minus

BO16209.complete Sequence

847 bp assembled on 2007-03-22

GenBank Submission: FJ633732

> BO16209.complete
GAAGTTATCAGTCGACATGTCTTCGGCGTTAATAAAATGTTTAAATTTGG
CAAAAACTGTGGGAAATGCGACAGTCAGGAGCTTTTTGGCAGCTCCCAAG
CAGCCATGGCAGTCGTGCAGTGCGGCTGCCCTGCAAACGCCGCATGTTCA
AATGCCGATGCAAATGCACACTTCCGCTGTTCGCCGGGATCTTATGGAGT
TCTTCGACGACAAGAAGAACTGGAGCGAGAATGAGGTGAAGGTGGGCCGC
GCCTGGCGGACGGAGGAGCTGCGTATCAAGTCCAACAAGGAGCTGCACCA
GCTGTGGTTCGTGCTCCTCAAGGAGCGCAACATGCTGCTGACCATGGAGC
ACGAGTGCAATGACAAAATGGAAGTCTTCCCTAGTCCGGAGCGCATCGAT
AAGGTGAAAATCTCCATGGAAAACCTGGAGACAGTAGTGAGGGAGCGGAA
CAAGGCGTATCACCTGCTGGAAACAGGTGAAACGGGTGAACGGCCCCAGA
AGGCGGTGAAGAACGCATTTGGCCTGCAGGTCTCATACAAAGCATGCGAA
CACGCCCTGCCGCCCTTCATGAACCTCAAATGGATTAAATCCCGCAACAT
TGGCTACGGCGGCAGAGCTGTGAACAGATTCCTCTTAAAGTACAGGGAGA
AACTCTACAATGCCAAGCGCAAGGCCAAGAACCGCTCCCGCAACGAAGTC
ATGATGATCCTGCGTCGCAACCCCAATTTCGATCTGGATGTGCTGCGTCG
CCAGTTCCCCGATGTCAACGTGGACAAGCTGCGCAACGAGGACAAGATTC
GTGGTCACTATGTGCCCAAAGTTGGCGTGGCAAGCTTTCTAGACCAT

BO16209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL47-RB 816 CG9378-PB 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL47-RB 905 CG9378-RB 43..855 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9515399..9515686 406..119 1440 100 Minus
3R 32079331 3R 9515073..9515352 681..402 1400 100 Minus
3R 32079331 3R 9514872..9515019 829..682 740 100 Minus
3R 32079331 3R 9515763..9515866 120..17 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:03:37 has no hits.

BO16209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:37 Download gff for BO16209.complete
Subject Subject Range Query Range Percent Splice Strand
Rlc1-RB 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:10 Download gff for BO16209.complete
Subject Subject Range Query Range Percent Splice Strand
Rlc1-RB 242..1059 17..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:44 Download gff for BO16209.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL47-RB 43..855 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:37 Download gff for BO16209.complete
Subject Subject Range Query Range Percent Splice Strand
Rlc1-RB 242..1059 17..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:36 Download gff for BO16209.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL47-RB 43..855 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:36 Download gff for BO16209.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9514869..9515019 682..831 98 <- Minus
3R 9515073..9515350 404..681 100 <- Minus
3R 9515402..9515684 121..403 100 <- Minus
3R 9515763..9515866 17..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:44 Download gff for BO16209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5340591..5340741 682..831 98 <- Minus
arm_3R 5340795..5341072 404..681 100 <- Minus
arm_3R 5341124..5341406 121..403 100 <- Minus
arm_3R 5341485..5341588 17..120 100   Minus

BO16209.pep Sequence

Translation from 16 to 847

> BO16209.pep
MSSALIKCLNLAKTVGNATVRSFLAAPKQPWQSCSAAALQTPHVQMPMQM
HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVL
LKERNMLLTMEHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHL
LETGETGERPQKAVKNAFGLQVSYKACEHALPPFMNLKWIKSRNIGYGGR
AVNRFLLKYREKLYNAKRKAKNRSRNEVMMILRRNPNFDLDVLRRQFPDV
NVDKLRNEDKIRGHYVPKVGVASFLDH

BO16209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL47-PB 271 CG9378-PB 1..271 1..271 1422 100 Plus