Clone Sequence Records
BO16211.3prime Sequence
677 bp (677 high quality bases) assembled on 2006-10-13
> BO16211.3prime
ATGGTCTAGAAAGCTTGCATCTATCAGTCCCGTTTCGCAGTCGTAGGCTT
CCTCGCCGGACTCGAAAATGGGAAAACTCATGCCAGTACGACGGGCAATC
ACCGAGGCCAGTTCCTCGGAGTTGTTCTCCTTGCGCGGCTGGATGTATCG
GTCCAGCAGAAGGACCGTGGCCGTATTCCGACAATTGGACACAGTGGCGG
TTATGTGAAGCGGCGTCTGCTTGCCGTCGGATTCCGCATTTACATCGGCG
CCAAACTGCAGCAGCAAATGGGCGCAATCCGCATTGTTCCACTTGCAGGC
GGAGTGCAATGGCGTCCATCCCAGCTCCGTGCGGGCGTTGGGATTGGCAT
GGTACTGCAGCAGCAACTTGGCCATATCCACAAAGTTATTATAGGCAGCT
CGGTGCAGCGGCGTGTATCCGTCGTTATCCTTGGCGTTCACAGTGTCCGC
GTCCAATTTCAGGATTTCCCGCACCTCGCTGATGCGGTTCTCGTTCACCG
CCCACAGAATCATGCGTTCAATGCTGCTTTGTGGGTTCTTGTCCTCCTCG
ATCAGTTCGTCGGCATCGTCGTCCCAGCCGCTCACGAACATTCCGCGCGG
CACTTTGGCGTGGCGCAGCTTCTCCACCTGTGATTTTTCATCATCGGAAT
CGTAATCCCCCATGTCGACTGATAACT
BO16211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4140-PA | 648 | CG4140-RA | 1..645 | 663..19 | 3050 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Be-RA | 800 | CG4140-RA | 91..735 | 663..19 | 3120 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15006648..15007156 | 19..527 | 2470 | 99 | Plus |
| 2L | 23513712 | 2L | 15007205..15007341 | 527..663 | 655 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:19:04 has no hits.
BO16211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:25 Download gff for
BO16211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4140-PA | 1..648 | 15..663 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:53:05 Download gff for
BO16211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Be-RA | 85..738 | 15..671 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:41:27 Download gff for
BO16211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Be-RA | 85..738 | 15..671 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:41:27 Download gff for
BO16211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15006645..15007156 | 15..527 | 98 | <- | Plus |
| 2L | 15007206..15007347 | 528..671 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:53:05 Download gff for
BO16211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15006645..15007156 | 15..527 | 98 | <- | Plus |
| arm_2L | 15007206..15007347 | 528..671 | 95 | | Plus |
BO16211.complete Sequence
679 bp assembled on 2008-08-15
GenBank Submission: FJ633733
> BO16211.complete
GAAGTTATCAGTCGACATGGGGGATTACGATTCCGATGATGAAAAATCAC
AGGTGGAGAAGCTGCGCCACGCCAAAGTGCCGCGCGGAATGTTCGTGAGC
GGCTGGGACGACGATGCCGACGAACTGATCGAGGAGGACAAGAACCCACA
AAGCAGCATTGAACGCATGATTCTGTGGGCGGTGAACGAGAACCGCATCA
GCGAGGTGCGGGAAATCCTGAAATTGGACGCGGACACTGTGAACGCCAAG
GATAACGACGGATACACGCCGCTGCACCGAGCTGCCTATAATAACTTTGT
GGATATGGCCAAGTTGCTGCTGCAGTACCATGCCAATCCCAACGCCCGCA
CGGAGCTGGGATGGACGCCATTGCACTCCGCCTGCAAGTGGAACAATGCG
GATTGCGCCCATTTGCTGCTGCAGTTTGGCGCCGATGTAAATGCGGAATC
CGACGGCAAGCAGACGCCGCTTCACATAACCGCCACTGTGTCCAATTGTC
GGAATACGGCCACGGTCCTTCTGCTGGACCGATACATCCAGCCGCGCAAG
GAGAACAACTCCGAGGAACTGGCCTCGGTGATTGCCCGTCGTACTGGCAT
GAGTTTTCCCATTTTCGAGTCCGGCGAGGAAGCCTACGACTGCGAAACGG
GACTGATAGATGCAAGCTTTCTAGACCAT
BO16211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Be-RA | 648 | CG4140-PA | 1..645 | 17..661 | 3120 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Be-RA | 800 | CG4140-RA | 91..735 | 17..661 | 3120 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15006648..15007156 | 661..153 | 2470 | 99 | Minus |
| 2L | 23513712 | 2L | 15007205..15007341 | 153..17 | 655 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:48:54 has no hits.
BO16211.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:30 Download gff for
BO16211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4140-RA | 58..711 | 9..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:25 Download gff for
BO16211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Be-RA | 91..735 | 17..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:53 Download gff for
BO16211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4140-RA | 64..708 | 17..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:14 Download gff for
BO16211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Be-RA | 91..735 | 17..663 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:14 Download gff for
BO16211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15006646..15007156 | 153..663 | 98 | <- | Minus |
| 2L | 15007206..15007341 | 17..152 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:25 Download gff for
BO16211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15007206..15007341 | 17..152 | 98 | | Minus |
| arm_2L | 15006646..15007156 | 153..663 | 98 | <- | Minus |
BO16211.pep Sequence
Translation from 16 to 679
> BO16211.pep
MGDYDSDDEKSQVEKLRHAKVPRGMFVSGWDDDADELIEEDKNPQSSIER
MILWAVNENRISEVREILKLDADTVNAKDNDGYTPLHRAAYNNFVDMAKL
LLQYHANPNARTELGWTPLHSACKWNNADCAHLLLQFGADVNAESDGKQT
PLHITATVSNCRNTATVLLLDRYIQPRKENNSEELASVIARRTGMSFPIF
ESGEEAYDCETGLIDASFLDH
BO16211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Be-PA | 215 | CG4140-PA | 1..215 | 1..215 | 1138 | 100 | Plus |
| Ank-PE | 1549 | CG1651-PE | 365..452 | 81..169 | 186 | 47.2 | Plus |
| Ank-PD | 1549 | CG1651-PD | 365..452 | 81..169 | 186 | 47.2 | Plus |
| Ank-PC | 1549 | CG1651-PC | 365..452 | 81..169 | 186 | 47.2 | Plus |
| Ank-PB | 1549 | CG1651-PB | 365..452 | 81..169 | 186 | 47.2 | Plus |
| Ank-PE | 1549 | CG1651-PE | 523..608 | 75..160 | 165 | 38.4 | Plus |
| Ank-PD | 1549 | CG1651-PD | 523..608 | 75..160 | 165 | 38.4 | Plus |
| Ank-PC | 1549 | CG1651-PC | 523..608 | 75..160 | 165 | 38.4 | Plus |
| Ank-PE | 1549 | CG1651-PE | 406..541 | 55..194 | 163 | 33.6 | Plus |
| Ank-PD | 1549 | CG1651-PD | 406..541 | 55..194 | 163 | 33.6 | Plus |
| Ank-PC | 1549 | CG1651-PC | 406..541 | 55..194 | 163 | 33.6 | Plus |
| Ank-PE | 1549 | CG1651-PE | 183..305 | 29..153 | 154 | 35.4 | Plus |
| Ank-PD | 1549 | CG1651-PD | 183..305 | 29..153 | 154 | 35.4 | Plus |
| Ank-PC | 1549 | CG1651-PC | 183..305 | 29..153 | 154 | 35.4 | Plus |
| Ank-PE | 1549 | CG1651-PE | 339..473 | 25..156 | 148 | 32.6 | Plus |
| Ank-PD | 1549 | CG1651-PD | 339..473 | 25..156 | 148 | 32.6 | Plus |
| Ank-PC | 1549 | CG1651-PC | 339..473 | 25..156 | 148 | 32.6 | Plus |
