Clone Sequence Records
BO16214.3prime Sequence
875 bp (868 high quality bases) assembled on 2006-10-13
> BO16214.3prime
ATGGTCTAGAAAGCTTGCCCGAACTTTTCGTTTGAGAATAGGGGCCTTGT
TGGTCAGCACACTTTGCCGGTTCATCGGAATGGCAACGGTCCGGGCCTTT
CGTTTGCCACCCGAGCGGCGATTGGTGGAGGTCACCATGTTTTGCGTGGG
CTTCTGCAGGGCGGTCGACTTCCTGAGACTCGCCTTGTTGGCGGCACTGA
ATAGGGTGCGCGTCGAGTTGAGGCTCTGCAGCGAGGTGTCCAGCTTGTTG
CGAATCCTGTCCAGATCGGCACGCATTCGCTGGATATCCATCGCTATGGT
GTGTCGATCGCTTTGCAGCTTCTTGTGCTGCTGCAACATGGTCTCCAGCA
CTTTCTTCTGTTGGATGACTTCACGGATGCGATTGTGCTGCTCAAAGCCC
CGCGATCTCTTCTGCTTCTGGTTGATGCAGGCCTTGACCTTCGCCAATGA
TTTGATGGCAATGCCATGGCCACTGTCCGCTTTCGAAGAGTTGCCGCCAC
CCTTGATGCGCCCCGCCGACTTGCGTTGCGGTTGCTTGGACACCAGTTTC
GATGGCAGTGGTGGTGCAACTACTGGTACTGGATTCGGAGTTCCAGATGT
GGGCAGCGGCCCCGTTGGCCGTGGTCTTCGTGGTGCTCGTACCGACTTCA
TGGTCGAGTGAATATTGGCCACCATATTGTCGTAGGTCTTTCTGGTGTCG
GGCAACAGGTAACGTCCTGGCAACTGACTCGATCTTAGCGAGGCCTTGAT
CCTGTCCCTCCTGGACAGCTGCGACAGCCTGGTCTTGGCGCTCTCCTCCT
GTTCCCAGTCCCTTCGCAGCTGGGTGGTCAGGATGTGGTGCAAGGCCAGT
CGATTGGTCATGTCGACTGATAACT
BO16214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-PA | 846 | CG7164-RA | 1..843 | 861..19 | 4140 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-RB | 1236 | CG7164-RB | 170..1013 | 862..19 | 4175 | 99.6 | Minus |
| CG7164-RA | 1026 | CG7164-RA | 170..1013 | 862..19 | 4175 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7781912..7782537 | 644..19 | 3085 | 99.5 | Minus |
| 2L | 23513712 | 2L | 7781634..7781851 | 862..645 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:54:04 has no hits.
BO16214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:26 Download gff for
BO16214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-PA | 1..846 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:25:43 Download gff for
BO16214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 165..1017 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:15 Download gff for
BO16214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 165..1017 | 15..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:15 Download gff for
BO16214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7781629..7781851 | 645..867 | 99 | -> | Minus |
| 2L | 7781912..7782541 | 15..644 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:25:43 Download gff for
BO16214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7781629..7781851 | 645..867 | 99 | -> | Minus |
| arm_2L | 7781912..7782541 | 15..644 | 99 | | Minus |
BO16214.complete Sequence
877 bp assembled on 2008-08-15
GenBank Submission: FJ633734
> BO16214.complete
GAAGTTATCAGTCGACATGACCAATCGACTGGCCTTGCACCACATCCTGA
CCACCCAGCTGCGAAGGGACTGGGAACAGGAGGAGAGCGCCAAGACCAGG
CTGTCGCAGCTGTCCAGGAGGGACAGGATCAAGGCCTCGCTAAGATCGAG
TCAGTTGCCAGGACGTTACCTGTTGCCCGACACCAGAAAGACCTACGACA
ATATGGTGGCCAATATTCACTCGACCATGAAGTCGGTACGAGCACCACGA
AGACCACGGCCAACGGGGCCGCTGCCCACATCTGGAACTCCGAATCCAGT
ACCAGTAGTTGCACCACCACTGCCATCGAAACTGGTGTCCAAGCAACCGC
AACGCAAGTCGGCGGGGCGCATCAAGGGTGGCGGCAACTCTTCGAAAGCG
GACAGTGGCCATGGCATTGCCATCAAATCATTGGCGAAGGTCAAGGCCTG
CATCAACCAGAAGCAGAAGAGATCGCGGGGCTTTGAGCAGCACAATCGCA
TCCGTGAAGTCATCCAACAGAAGAAAGTGCTGGAGACCATGTTGCAGCAG
CACAAGAAGCTGCAAAGCGATCGACACACCATAGCGATGGATATCCAGCG
AATGCGTGCCGATCTGGACAGGATTCGCAACAAGCTGGACACCTCGCTGC
AGAGCCTCAACTCGACGCGCACCCTATTCAGTGCCGCCAACAAGGCGAGT
CTCAGGAAGTCGACCGCCCTGCAGAAGCCCACGCAAAACATGGTGACCTC
CACCAATCGCCGCTCGGGTGGCAAACGAAAGGCCCGGACCGTTGCCATTC
CGATGAACCGGCAAAGTGTGCTGACCAACAAGGCCCCTATTCTCAAACGA
AAAGTTCGGGCAAGCTTTCTAGACCAT
BO16214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-RB | 846 | CG7164-PB | 1..843 | 17..859 | 4170 | 99.6 | Plus |
| CG7164-RA | 846 | CG7164-PA | 1..843 | 17..859 | 4170 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-RB | 1236 | CG7164-RB | 170..1013 | 16..859 | 4175 | 99.6 | Plus |
| CG7164-RA | 1026 | CG7164-RA | 170..1013 | 16..859 | 4175 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7781912..7782537 | 234..859 | 3085 | 99.5 | Plus |
| 2L | 23513712 | 2L | 7781634..7781851 | 16..233 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:52:06 has no hits.
BO16214.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:18 Download gff for
BO16214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 127..979 | 11..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:01 Download gff for
BO16214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 171..1013 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:19 Download gff for
BO16214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 133..975 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:31 Download gff for
BO16214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 171..1013 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:31 Download gff for
BO16214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7781635..7781851 | 17..233 | 100 | -> | Plus |
| 2L | 7781912..7782537 | 234..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:01 Download gff for
BO16214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7781635..7781851 | 17..233 | 100 | -> | Plus |
| arm_2L | 7781912..7782537 | 234..861 | 99 | | Plus |
BO16214.pep Sequence
Translation from 16 to 877
> BO16214.pep
MTNRLALHHILTTQLRRDWEQEESAKTRLSQLSRRDRIKASLRSSQLPGR
YLLPDTRKTYDNMVANIHSTMKSVRAPRRPRPTGPLPTSGTPNPVPVVAP
PLPSKLVSKQPQRKSAGRIKGGGNSSKADSGHGIAIKSLAKVKACINQKQ
KRSRGFEQHNRIREVIQQKKVLETMLQQHKKLQSDRHTIAMDIQRMRADL
DRIRNKLDTSLQSLNSTRTLFSAANKASLRKSTALQKPTQNMVTSTNRRS
GGKRKARTVAIPMNRQSVLTNKAPILKRKVRASFLDH
BO16214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-PB | 281 | CG7164-PB | 1..281 | 1..281 | 1412 | 100 | Plus |
| CG7164-PA | 281 | CG7164-PA | 1..281 | 1..281 | 1412 | 100 | Plus |
