Clone Sequence Records
BO16216.3prime Sequence
810 bp (809 high quality bases) assembled on 2006-10-13
> BO16216.3prime
ATGGTCTAGAAAGCTTGCGGCGGCATCCTTCTTCTTGTTTGAATTGGTGC
CATCATTGAAGGGTTGCACATCGCCGGACGCCCAAATACAATACACAATC
GCCGTGACGACAAGAACGCCAAATGCGACCCAAAAGACTAATCTCCACTC
CAAGAGGGTGGCATTCGGTGTCATTACACCAACTAAGTATGGTGATACCA
CGCCCGTAATCGCACCAATGCCATTGGTAATGGCCATCAGAGTTCCAGCA
TAATTCGGACTCATGTCCAATGGCGTGAGCTTCATGCCAGCATAGTAGGT
GCCCATCAGACCCATGGTAATTGTGAATAGAGCAACGACCATGCCTCGAT
TGCATCCAGCATAGGATGCAGCTACCATGAAGACAGCCGGTCCAAAGGCG
GCCACTCCTGTCATTATTTTGCGCGTGTTTGTGGTGCTCATGCAGTTGCG
TTTGATCATTTGATCGGCCACACAGCCGCTGAGCAGCGACATGATCCACA
TGGTAACGTAGGGCAGTGAGGAGTAGAGACCATTCGACTTAATCGAAAAC
CGCAGCACATCCGACATATACTTTGGCAGGTAGGAGACCATAATATAGAA
ACCCCAATCGTGTCCGATTTGAGCACTGATCAATGCCCACATGGGTATGC
TTGTTAATATGGCAAAAAATGGTGTCTTCGGCTTGTTCTTATCCGGCGGC
GGTACCTCCTGTGCCAAGAACGCACGTTCCTCTGGCTTGATATATGGATG
AGTGAATGGACTGCTAAAGCACACTAGCGTGAAAACGACAAACCAGACAA
GGGCGATGAT
BO16216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-PA | 1446 | CG9254-RA | 652..1443 | 810..19 | 3935 | 99.8 | Minus |
| CG5304-PA | 1491 | l(2)01810-RA | 1137..1175 | 316..278 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-RA | 1684 | CG9254-RA | 841..1632 | 810..19 | 3945 | 99.9 | Minus |
| dmGlut-RA | 2426 | CG5304-RA | 1185..1742 | 612..55 | 675 | 75.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13595555..13596346 | 19..810 | 3945 | 99.9 | Plus |
| 2L | 23513712 | 2L | 12032820..12033270 | 612..162 | 590 | 75.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:02:42 has no hits.
BO16216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:29 Download gff for
BO16216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-PA | 652..1446 | 16..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:23 Download gff for
BO16216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 841..1636 | 15..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:40 Download gff for
BO16216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 841..1636 | 15..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:40 Download gff for
BO16216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13595551..13596346 | 15..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:23 Download gff for
BO16216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13595551..13596346 | 15..810 | 99 | | Plus |
BO16216.5prime Sequence
854 bp (744 high quality bases) assembled on 2006-10-13
> BO16216.5prime
GAAGTTATCAGTCGACATGGCGGATGCAAAAGAGCAACCAGAATGGGGCA
TAAAGCTCTCAAAATTCTTTGTATTACCCCAACGCTGGATTCTGGCCATC
ATGGGATTCTTTGCCATCTTTAATGCATACACCATGCGGATATGTCTATC
CCAGGCCATCACAGTGCTGGTGGTGAAGAGGAATTATACTATTTTCCACA
CCGAAGCGATATGTGAACCGGATGACCAGTCTGATCCCTCGAGCACTTTC
GAGGGAGGCGACTATGATTGGTCGCAGGAGAAACAGGGTCTAATCCTGGC
CTCTTTCTACATTGGCTATATTGTAACTCATTTGCCTGGTGGAATTCTGG
CTGACAAATTTGGCGGAAAGTGGACACTGAGTCTTGGAATCTTTTTTACG
GCTATTTTTACATTGCTGACACCCGTCTGCATTGTTTATGGCGGTGCCGA
TGCATTAATTGTCCTCCGCGTACTTATGGGACTCGGTGAAGGAACCACTT
TCCCCGCACTCAGCGTTTTGCTAGCCAGCTGGGTACCGGCAAACGAGCGA
GGAATGCTGGGAGCCCTTGTACTCGGCGGTGGTCAGATGGGTAGCATTGC
TGGTAACATTATTTCTGGCTATGTACTCAGCTCCATGGACTGGCCATGGG
TATTCTATGTTTTTGCGATCATCGCCCTTGTCTGGTTTGTCGTTTTCACG
CTAGTGTGCTTTAGCAGTCCATTCACTCATCCATATATCAAGCCAGAGGA
ACGTGCGTTCTTGGCACAGGAGGTACCGCCGCCGGATAAGAACAAGCCGA
AGACACCATTTTTTGCCATATTAACAAGCATACCCATGTGGGCATTGATC
AGTG
BO16216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-PA | 1446 | CG9254-RA | 1..838 | 17..854 | 4165 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-RA | 1684 | CG9254-RA | 190..1027 | 17..854 | 4175 | 99.9 | Plus |
| dmGlut-RA | 2426 | CG5304-RA | 357..502 | 38..183 | 280 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13596160..13596997 | 854..17 | 4175 | 99.9 | Minus |
| 2L | 23513712 | 2L | 12031902..12032010 | 75..183 | 275 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:28:12 has no hits.
BO16216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:30 Download gff for
BO16216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:03 Download gff for
BO16216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 183..1027 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:13 Download gff for
BO16216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 183..1027 | 9..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:13 Download gff for
BO16216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13596160..13597004 | 9..854 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:03 Download gff for
BO16216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13596160..13597004 | 9..854 | 99 | | Minus |
BO16216.complete Sequence
1477 bp assembled on 2006-10-11
GenBank Submission: FJ633735
> BO16216.complete
GAAGTTATCAGTCGACATGGCGGATGCAAAAGAGCAACCAGAATGGGGCA
TAAAGCTCTCAAAATTCTTTGTATTACCCCAACGCTGGATTCTGGCCATC
ATGGGATTCTTTGCCATCTTTAATGCATACACCATGCGGATATGTCTATC
CCAGGCCATCACAGTGCTGGTGGTGAAGAGGAATTATACTATTTTCCACA
CCGAAGCGATATGTGAACCGGATGACCAGTCTGATCCCTCGAGCACTTTC
GAGGGAGGCGACTATGATTGGTCGCAGGAGAAACAGGGTCTAATCCTGGC
CTCTTTCTACATTGGCTATATTGTAACTCATTTGCCTGGTGGAATTCTGG
CTGACAAATTTGGCGGAAAGTGGACACTGAGTCTTGGAATCTTTTTTACG
GCTATTTTTACATTGCTGACACCCGTCTGCATTGTTTATGGCGGTGCCGA
TGCATTAATTGTCCTCCGCGTACTTATGGGACTCGGTGAAGGAACCACTT
TCCCCGCACTCAGCGTTTTGCTAGCCAGCTGGGTACCGGCAAACGAGCGA
GGAATGCTGGGAGCCCTTGTACTCGGCGGTGGTCAGATGGGTAGCATTGC
TGGTAACATTATTTCTGGCTATGTACTCAGCTCCATGGACTGGCCATGGG
TATTCTATGTTTTTGCGATCATCGCCCTTGTCTGGTTTGTCGTTTTCACG
CTAGTGTGCTTTAGCAGTCCATTCACTCATCCATATATCAAGCCAGAGGA
ACGTGCGTTCTTGGCACAGGAGGTACCGCCGCCGGATAAGAACAAGCCGA
AGACACCATTTTTTGCCATATTAACAAGCATACCCATGTGGGCATTGATC
AGTGCTCAAATCGGACACGATTGGGGTTTCTATATTATGGTCTCCTACCT
GCCAAAGTATATGTCGGATGTGCTGCGGTTTTCGATTAAGTCGAATGGTC
TCTACTCCTCACTGCCCTACGTTACCATGTGGATCATGTCGCTGCTCAGC
GGCTGTGTGGCCGATCAAATGATCAAACGCAACTGCATGAGCACCACAAA
CACGCGCAAAATAATGACAGGAGTGGCCGCCTTTGGACCGGCTGTCTTCA
TGGTAGCTGCATCCTATGCTGGATGCAATCGAGGCATGGTCGTTGCTCTA
TTCACAATTACCATGGGTCTGATGGGCACCTACTATGCTGGCATGAAGCT
CACGCCATTGGACATGAGTCCGAATTATGCTGGAACTCTGATGGCCATTA
CCAATGGCATTGGTGCGATTACGGGCGTGGTATCACCATACTTAGTTGGT
GTAATGACACCGAATGCCACCCTCTTGGAGTGGAGATTAGTCTTTTGGGT
CGCATTTGGCGTTCTTGTCGTCACGGCGATTGTGTATTGTATTTGGGCGT
CCGGCGATGTGCAACCCTTCAATGATGGCACCAATTCAAACAAGAAGAAG
GATGCCGCCGCAAGCTTTCTAGACCAT
BO16216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-RA | 1446 | CG9254-PA | 1..1443 | 17..1459 | 7185 | 99.9 | Plus |
| dmGlut-RA | 1491 | CG5304-PA | 841..1398 | 866..1423 | 675 | 74.7 | Plus |
| dmGlut-RA | 1491 | CG5304-PA | 13..158 | 38..183 | 280 | 79.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-RA | 1684 | CG9254-RA | 190..1632 | 17..1459 | 7185 | 99.9 | Plus |
| dmGlut-RA | 2426 | CG5304-RA | 1185..1742 | 866..1423 | 675 | 74.7 | Plus |
| dmGlut-RA | 2426 | CG5304-RA | 357..502 | 38..183 | 280 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13595555..13596997 | 1459..17 | 7185 | 99.9 | Minus |
| 2L | 23513712 | 2L | 12032820..12033270 | 866..1316 | 590 | 75.4 | Plus |
| 2L | 23513712 | 2L | 12031902..12032010 | 75..183 | 275 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:03:58 has no hits.
BO16216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:00 Download gff for
BO16216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 1..1446 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:10 Download gff for
BO16216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 183..1636 | 9..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:07 Download gff for
BO16216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 190..1632 | 17..1461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:00 Download gff for
BO16216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 183..1636 | 9..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:11 Download gff for
BO16216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9254-RA | 190..1632 | 17..1461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:11 Download gff for
BO16216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13595552..13596997 | 17..1461 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:07 Download gff for
BO16216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13595552..13596997 | 17..1461 | 99 | | Minus |
BO16216.pep Sequence
Translation from 16 to 1477
> BO16216.pep
MADAKEQPEWGIKLSKFFVLPQRWILAIMGFFAIFNAYTMRICLSQAITV
LVVKRNYTIFHTEAICEPDDQSDPSSTFEGGDYDWSQEKQGLILASFYIG
YIVTHLPGGILADKFGGKWTLSLGIFFTAIFTLLTPVCIVYGGADALIVL
RVLMGLGEGTTFPALSVLLASWVPANERGMLGALVLGGGQMGSIAGNIIS
GYVLSSMDWPWVFYVFAIIALVWFVVFTLVCFSSPFTHPYIKPEERAFLA
QEVPPPDKNKPKTPFFAILTSIPMWALISAQIGHDWGFYIMVSYLPKYMS
DVLRFSIKSNGLYSSLPYVTMWIMSLLSGCVADQMIKRNCMSTTNTRKIM
TGVAAFGPAVFMVAASYAGCNRGMVVALFTITMGLMGTYYAGMKLTPLDM
SPNYAGTLMAITNGIGAITGVVSPYLVGVMTPNATLLEWRLVFWVAFGVL
VVTAIVYCIWASGDVQPFNDGTNSNKKKDAAASFLDH
BO16216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9254-PA | 481 | CG9254-PA | 1..481 | 1..481 | 2534 | 100 | Plus |
| dmGlut-PA | 496 | CG5304-PA | 3..479 | 6..482 | 1794 | 69.9 | Plus |
| Picot-PD | 516 | CG8098-PD | 17..489 | 6..477 | 847 | 36.9 | Plus |
| Picot-PC | 516 | CG8098-PC | 17..489 | 6..477 | 847 | 36.9 | Plus |
| Picot-PA | 516 | CG8098-PA | 17..489 | 6..477 | 847 | 36.9 | Plus |
