Clone BO16218 Report

Search the DGRC for BO16218

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG18469-RA
Protein status:BO16218.pep: validated full length
Sequenced Size:418

Clone Sequence Records

BO16218.3prime Sequence

416 bp (416 high quality bases) assembled on 2006-10-13

> BO16218.3prime
ATGGTCTAGAAAGCTTGCTTGCGGCACTCGGACTAACCGATCATTATCAG
TAGCTTCAATTCTATTACGATTCACATCTGTATCTGTAGACTCGTCAGAA
TCGCCTTCCTCGCCATCGGTATCACTCTCTGCCTCAGAGCCAGATTCATT
GTCCTGCCAGGGATTAGACTTCCAAAATCTTTGCTTCTGGAGGCGCAACT
GTTTGGCCAACCGGAGCACACGCAACTTGACCCAAATGACTCTGGTGGCA
TAGACGGCAACTCCGGCTGCCGTCAACCATGGGTGTTGCATCATCATCCG
GGCTCCGGAAGTTGTGGCGTCCGCATCGCGAGGCGTGGTATCGGGAACTG
GCACGGCAGCAACCCCTTCAGAATCTGTGTCCTCAGATGCGGACTCACTC
ATGTCGACTGATAACT

BO16218.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-PA 387 CG18469-RA 1..384 402..19 1920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-RA 509 CG18469-RA 7..392 404..19 1930 100 Minus
CG12699-RB 766 CG12699-RB 164..268 303..199 225 81 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17245886..17246271 19..404 1930 100 Plus
2R 25286936 2R 17247028..17247132 199..303 225 81 Plus
Blast to na_te.dros performed on 2015-02-03 06:44:56 has no hits.

BO16218.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:32 Download gff for BO16218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-PA 1..387 18..402 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:18 Download gff for BO16218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..398 10..409 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:10 Download gff for BO16218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..398 10..409 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:10 Download gff for BO16218.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17245879..17246276 10..412 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:18 Download gff for BO16218.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13133384..13133781 10..412 98   Plus

BO16218.5prime Sequence

416 bp (416 high quality bases) assembled on 2006-10-13

> BO16218.5prime
GAAGTTATCAGTCGACATGAGTGAGTCCGCATCTGAGGACACAGATTCTG
AAGGGGTTGCTGCCGTGCCAGTTCCCGATACCACGCCTCGCGATGCGGAC
GCCACAACTTCCGGAGCCCGGATGATGATGCAACACCCATGGTTGACGGC
AGCCGGAGTTGCCGTCTATGCCACCAGAGTCATTTGGGTCAAGTTGCGTG
TGCTCCGGTTGGCCAAACAGTTGCGCCTCCAGAAGCAAAGATTTTGGAAG
TCTAATCCCTGGCAGGACAATGAATCTGGCTCTGAGGCAGAGAGTGATAC
CGATGGCGAGGAAGGCGATTCTGACGAGTCTACAGATACAGATGTGAATC
GTAATAGAATTGAAGCTACTGATAATGATCGGTTAGTCCGAGTGCCGCAA
GCAAGCTTTCTAGACC

BO16218.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-PA 387 CG18469-RA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-RA 509 CG18469-RA 7..392 15..400 1930 100 Plus
CG12699-RB 766 CG12699-RB 164..268 116..220 225 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17245886..17246271 400..15 1930 100 Minus
2R 25286936 2R 17247028..17247132 220..116 225 81 Minus
Blast to na_te.dros performed on 2015-02-10 17:55:07 has no hits.

BO16218.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:33 Download gff for BO16218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-PA 1..387 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:30 Download gff for BO16218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..398 10..409 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:59 Download gff for BO16218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..398 10..409 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:59 Download gff for BO16218.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17245879..17246276 7..409 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:30 Download gff for BO16218.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13133384..13133781 7..409 98   Minus

BO16218.complete Sequence

418 bp assembled on 2006-10-11

GenBank Submission: FJ633736

> BO16218.complete
GAAGTTATCAGTCGACATGAGTGAGTCCGCATCTGAGGACACAGATTCTG
AAGGGGTTGCTGCCGTGCCAGTTCCCGATACCACGCCTCGCGATGCGGAC
GCCACAACTTCCGGAGCCCGGATGATGATGCAACACCCATGGTTGACGGC
AGCCGGAGTTGCCGTCTATGCCACCAGAGTCATTTGGGTCAAGTTGCGTG
TGCTCCGGTTGGCCAAACAGTTGCGCCTCCAGAAGCAAAGATTTTGGAAG
TCTAATCCCTGGCAGGACAATGAATCTGGCTCTGAGGCAGAGAGTGATAC
CGATGGCGAGGAAGGCGATTCTGACGAGTCTACAGATACAGATGTGAATC
GTAATAGAATTGAAGCTACTGATAATGATCGGTTAGTCCGAGTGCCGCAA
GCAAGCTTTCTAGACCAT

BO16218.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-RA 387 CG18469-PA 1..384 17..400 1920 100 Plus
CG12699-RB 438 CG12699-PB 91..195 116..220 225 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-RA 509 CG18469-RA 7..392 15..400 1930 100 Plus
CG12699-RB 766 CG12699-RB 164..268 116..220 225 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17245886..17246271 400..15 1930 100 Minus
2R 25286936 2R 17247028..17247132 220..116 225 81 Minus
Blast to na_te.dros performed on 2014-11-27 20:08:15 has no hits.

BO16218.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:01 Download gff for BO16218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..387 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:12 Download gff for BO16218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..398 10..409 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:44 Download gff for BO16218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 9..392 17..402 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:02 Download gff for BO16218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 1..398 10..409 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:37 Download gff for BO16218.complete
Subject Subject Range Query Range Percent Splice Strand
CG18469-RA 9..392 17..402 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:37 Download gff for BO16218.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17245884..17246269 17..402 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:44 Download gff for BO16218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13133389..13133774 17..402 99   Minus

BO16218.pep Sequence

Translation from 16 to 418

> BO16218.pep
MSESASEDTDSEGVAAVPVPDTTPRDADATTSGARMMMQHPWLTAAGVAV
YATRVIWVKLRVLRLAKQLRLQKQRFWKSNPWQDNESGSEAESDTDGEEG
DSDESTDTDVNRNRIEATDNDRLVRVPQASFLDH

BO16218.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18469-PA 128 CG18469-PA 1..128 1..128 663 100 Plus
CG12699-PB 145 CG12699-PB 1..119 1..116 229 45.9 Plus