Clone Sequence Records
BO16218.3prime Sequence
416 bp (416 high quality bases) assembled on 2006-10-13
> BO16218.3prime
ATGGTCTAGAAAGCTTGCTTGCGGCACTCGGACTAACCGATCATTATCAG
TAGCTTCAATTCTATTACGATTCACATCTGTATCTGTAGACTCGTCAGAA
TCGCCTTCCTCGCCATCGGTATCACTCTCTGCCTCAGAGCCAGATTCATT
GTCCTGCCAGGGATTAGACTTCCAAAATCTTTGCTTCTGGAGGCGCAACT
GTTTGGCCAACCGGAGCACACGCAACTTGACCCAAATGACTCTGGTGGCA
TAGACGGCAACTCCGGCTGCCGTCAACCATGGGTGTTGCATCATCATCCG
GGCTCCGGAAGTTGTGGCGTCCGCATCGCGAGGCGTGGTATCGGGAACTG
GCACGGCAGCAACCCCTTCAGAATCTGTGTCCTCAGATGCGGACTCACTC
ATGTCGACTGATAACT
BO16218.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-PA | 387 | CG18469-RA | 1..384 | 402..19 | 1920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-RA | 509 | CG18469-RA | 7..392 | 404..19 | 1930 | 100 | Minus |
CG12699-RB | 766 | CG12699-RB | 164..268 | 303..199 | 225 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17245886..17246271 | 19..404 | 1930 | 100 | Plus |
2R | 25286936 | 2R | 17247028..17247132 | 199..303 | 225 | 81 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:44:56 has no hits.
BO16218.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:32 Download gff for
BO16218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-PA | 1..387 | 18..402 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:18 Download gff for
BO16218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..398 | 10..409 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:10 Download gff for
BO16218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..398 | 10..409 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:10 Download gff for
BO16218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17245879..17246276 | 10..412 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:18 Download gff for
BO16218.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13133384..13133781 | 10..412 | 98 | | Plus |
BO16218.5prime Sequence
416 bp (416 high quality bases) assembled on 2006-10-13
> BO16218.5prime
GAAGTTATCAGTCGACATGAGTGAGTCCGCATCTGAGGACACAGATTCTG
AAGGGGTTGCTGCCGTGCCAGTTCCCGATACCACGCCTCGCGATGCGGAC
GCCACAACTTCCGGAGCCCGGATGATGATGCAACACCCATGGTTGACGGC
AGCCGGAGTTGCCGTCTATGCCACCAGAGTCATTTGGGTCAAGTTGCGTG
TGCTCCGGTTGGCCAAACAGTTGCGCCTCCAGAAGCAAAGATTTTGGAAG
TCTAATCCCTGGCAGGACAATGAATCTGGCTCTGAGGCAGAGAGTGATAC
CGATGGCGAGGAAGGCGATTCTGACGAGTCTACAGATACAGATGTGAATC
GTAATAGAATTGAAGCTACTGATAATGATCGGTTAGTCCGAGTGCCGCAA
GCAAGCTTTCTAGACC
BO16218.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-PA | 387 | CG18469-RA | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-RA | 509 | CG18469-RA | 7..392 | 15..400 | 1930 | 100 | Plus |
CG12699-RB | 766 | CG12699-RB | 164..268 | 116..220 | 225 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17245886..17246271 | 400..15 | 1930 | 100 | Minus |
2R | 25286936 | 2R | 17247028..17247132 | 220..116 | 225 | 81 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:55:07 has no hits.
BO16218.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:33 Download gff for
BO16218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-PA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:30 Download gff for
BO16218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..398 | 10..409 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:59 Download gff for
BO16218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..398 | 10..409 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:59 Download gff for
BO16218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17245879..17246276 | 7..409 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:30 Download gff for
BO16218.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13133384..13133781 | 7..409 | 98 | | Minus |
BO16218.complete Sequence
418 bp assembled on 2006-10-11
GenBank Submission: FJ633736
> BO16218.complete
GAAGTTATCAGTCGACATGAGTGAGTCCGCATCTGAGGACACAGATTCTG
AAGGGGTTGCTGCCGTGCCAGTTCCCGATACCACGCCTCGCGATGCGGAC
GCCACAACTTCCGGAGCCCGGATGATGATGCAACACCCATGGTTGACGGC
AGCCGGAGTTGCCGTCTATGCCACCAGAGTCATTTGGGTCAAGTTGCGTG
TGCTCCGGTTGGCCAAACAGTTGCGCCTCCAGAAGCAAAGATTTTGGAAG
TCTAATCCCTGGCAGGACAATGAATCTGGCTCTGAGGCAGAGAGTGATAC
CGATGGCGAGGAAGGCGATTCTGACGAGTCTACAGATACAGATGTGAATC
GTAATAGAATTGAAGCTACTGATAATGATCGGTTAGTCCGAGTGCCGCAA
GCAAGCTTTCTAGACCAT
BO16218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-RA | 387 | CG18469-PA | 1..384 | 17..400 | 1920 | 100 | Plus |
CG12699-RB | 438 | CG12699-PB | 91..195 | 116..220 | 225 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-RA | 509 | CG18469-RA | 7..392 | 15..400 | 1930 | 100 | Plus |
CG12699-RB | 766 | CG12699-RB | 164..268 | 116..220 | 225 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17245886..17246271 | 400..15 | 1930 | 100 | Minus |
2R | 25286936 | 2R | 17247028..17247132 | 220..116 | 225 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:08:15 has no hits.
BO16218.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:01 Download gff for
BO16218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:12 Download gff for
BO16218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..398 | 10..409 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:44 Download gff for
BO16218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 9..392 | 17..402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:02 Download gff for
BO16218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 1..398 | 10..409 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:37 Download gff for
BO16218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18469-RA | 9..392 | 17..402 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:37 Download gff for
BO16218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17245884..17246269 | 17..402 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:44 Download gff for
BO16218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13133389..13133774 | 17..402 | 99 | | Minus |
BO16218.pep Sequence
Translation from 16 to 418
> BO16218.pep
MSESASEDTDSEGVAAVPVPDTTPRDADATTSGARMMMQHPWLTAAGVAV
YATRVIWVKLRVLRLAKQLRLQKQRFWKSNPWQDNESGSEAESDTDGEEG
DSDESTDTDVNRNRIEATDNDRLVRVPQASFLDH
BO16218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18469-PA | 128 | CG18469-PA | 1..128 | 1..128 | 663 | 100 | Plus |
CG12699-PB | 145 | CG12699-PB | 1..119 | 1..116 | 229 | 45.9 | Plus |