Clone Sequence Records
BO16221.3prime Sequence
824 bp (795 high quality bases) assembled on 2006-10-13
> BO16221.3prime
ATGGTCTAGAAAGCTTGCATGTGCGTCACTGCCGCCGGTGGATGCAGTGG
TTTCCATGTCAGATGTATCATTGGGTGGAACTCCACTGCTACTCGGTCCG
TGGTCCGTCATGTCATCATCGCTCATTCCCTCCTCGGATAGAGGATCGTG
GTCCGCCTCCAGAGGTGGATCCATAGCCTTGACCAATTTCACATACTTCT
GGTTCTCGGCTTCCGTAAACATTTTAAACGGCACATCCTTGCCCACAATG
GCCACATTTATGGTGAGATTCTCGACATCATCGGAACCCAACGATCCTCG
AATGGCCTGAATGGCATGACATATCAGTTCATCCATGTCGCAGTCCTCGA
AACTCTCCATATTTCGCTCCAGATATGTGCGAGCACTCTGCGAACGAGAT
CCAATGGCCATTGCCTTGCAGTTGAGCACATTGGCCGTGGGCATCACCTG
GTAGATATGTGGTCCCTGCTCATCGTATCCAGCCACCAGCAAGCCCACAC
CGTAGGGACGACGATCATAGCGCTGGGTGGTGGTCTGCAGCTTGTTACCC
AGATTGGAAACCAAACGGCGAACCGGAAATTCTGCGTTATAGGAGTGCCG
ATATGCCATGCACTCCGTCCTCATGTACTGGCACACCACGCGGGCATCTG
CCGTTAGTCCTGCGATAGACATACCCACGTGGTCATCCACCGGCATGATC
TTCCGCTGGAGCGTGTTCGTGTCCTTTGAGGTGCGGCACAGGGCGGCCAG
CACGGCATAGTCGGTGCCTTTGAGTCCCACGGTGGCTGCTCCCTGTTTCA
CCGCCTCCATTGCGTACTCCACCT
BO16221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5648-PA | 870 | Prosalpha6T-RA | 62..867 | 824..19 | 4005 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha6T-RA | 1020 | CG5648-RA | 131..936 | 824..19 | 4015 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13232169..13232974 | 824..19 | 4015 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:08:40 has no hits.
BO16221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:35 Download gff for
BO16221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5648-PA | 62..870 | 16..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:53 Download gff for
BO16221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 131..942 | 12..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:02 Download gff for
BO16221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 131..942 | 12..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:02 Download gff for
BO16221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13232169..13232980 | 12..824 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:53 Download gff for
BO16221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13232169..13232980 | 12..824 | 99 | | Minus |
BO16221.5prime Sequence
896 bp (858 high quality bases) assembled on 2006-10-13
> BO16221.5prime
GAAGTTATCAGTCGACATGTTCCGGAATCAGTATGACAACGACACAACCA
CTTGGAGTCCGCAGGGTCGTCTCTTCCAGGTGGAGTACGCAATGGAGGCG
GTGAAACAGGGAGCAGCCACCGTGGGACTCAAAGGCACCGACTATGCCGT
GCTGGCCGCCCTGTGCCGCACCTCAAAGGACACGAACACGCTCCAGCGGA
AGATCATGCCGGTGGATGACCACGTGGGTATGTCTATCGCAGGACTAACG
GCAGATGCCCGCGTGGTGTGCCAGTACATGAGGACGGAGTGCATGGCATA
TCGGCACTCCTATAACGCAGAATTTCCGGTTCGCCGTTTGGTTTCCAATC
TGGGTAACAAGCTGCAGACCACCACCCAGCGCTATGATCGTCGTCCCTAC
GGTGTGGGCTTGCTGGTGGCTGGATACGATGAGCAGGGACCACATATCTA
CCAGGTGATGCCCACGGCCAATGTGCTCAACTGCAAGGCAATGGCCATTG
GATCTCGTTCGCAGAGTGCTCGCACATATCTGGAGCGAAATATGGAGAGT
TTCGAGGACTGCGACATGGATGAACTGATATGTCATGCCATTCAGGCCAT
TCGAGGATCGTTGGGTTCCGATGATGTCGAGAATCTCACCATAAATGTGG
CCATTGTGGGCAAGGATGTGCCGTTTAAAATGTTTACGGAAGCCGAGAAC
CAGAAGTATGTGAAATTGGTCAAGGCTATGGATCCACCTCTGGAGGCGGA
CCACGATCCTCTATCCGAGGAGGGAATGAGCGATGATGACATGACGGACC
ACGGACCGAGTAGCAGTGGAGTTCCACCCAATGATACATCTGACATGGAA
ACCACTGCATCCACCGGCGGCAGTGACGCACATGCAAGCTTTCTAG
BO16221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5648-PA | 870 | Prosalpha6T-RA | 1..867 | 17..883 | 4310 | 99.8 | Plus |
| CG4904-PA | 840 | Pros35-RA | 37..91 | 53..107 | 175 | 92.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha6T-RA | 1020 | CG5648-RA | 69..936 | 16..883 | 4325 | 99.9 | Plus |
| Prosalpha6-RA | 1027 | CG4904-RA | 129..611 | 53..535 | 395 | 73 | Plus |
| Prosalpha6-RB | 1070 | CG4904-RB | 129..611 | 53..535 | 395 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13232107..13232974 | 16..883 | 4325 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10221547..10222029 | 53..535 | 330 | 71.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:58:24 has no hits.
BO16221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:36 Download gff for
BO16221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5648-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:57 Download gff for
BO16221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 69..942 | 16..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:24 Download gff for
BO16221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 69..942 | 16..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:24 Download gff for
BO16221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13232107..13232980 | 16..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:57 Download gff for
BO16221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13232107..13232980 | 16..890 | 99 | | Plus |
BO16221.complete Sequence
901 bp assembled on 2006-10-11
GenBank Submission: FJ633737
> BO16221.complete
GAAGTTATCAGTCGACATGTTCCGGAATCAGTATGACAACGACACAACCA
CTTGGAGTCCGCAGGGTCGTCTCTTCCAGGTGGAGTACGCAATGGAGGCG
GTGAAACAGGGAGCAGCCACCGTGGGACTCAAAGGCACCGACTATGCCGT
GCTGGCCGCCCTGTGCCGCACCTCAAAGGACACGAACACGCTCCAGCGGA
AGATCATGCCGGTGGATGACCACGTGGGTATGTCTATCGCAGGACTAACG
GCAGATGCCCGCGTGGTGTGCCAGTACATGAGGACGGAGTGCATGGCATA
TCGGCACTCCTATAACGCAGAATTTCCGGTTCGCCGTTTGGTTTCCAATC
TGGGTAACAAGCTGCAGACCACCACCCAGCGCTATGATCGTCGTCCCTAC
GGTGTGGGCTTGCTGGTGGCTGGATACGATGAGCAGGGACCACATATCTA
CCAGGTGATGCCCACGGCCAATGTGCTCAACTGCAAGGCAATGGCCATTG
GATCTCGTTCGCAGAGTGCTCGCACATATCTGGAGCGAAATATGGAGAGT
TTCGAGGACTGCGACATGGATGAACTGATATGTCATGCCATTCAGGCCAT
TCGAGGATCGTTGGGTTCCGATGATGTCGAGAATCTCACCATAAATGTGG
CCATTGTGGGCAAGGATGTGCCGTTTAAAATGTTTACGGAAGCCGAGAAC
CAGAAGTATGTGAAATTGGTCAAGGCTATGGATCCACCTCTGGAGGCGGA
CCACGATCCTCTATCCGAGGAGGGAATGAGCGATGATGACATGACGGACC
ACGGACCGAGTAGCAGTGGAGTTCCACCCAATGATACATCTGACATGGAA
ACCACTGCATCCACCGGCGGCAGTGACGCACATGCAAGCTTTCTAGACCA
T
BO16221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha6T-RA | 870 | CG5648-PA | 1..867 | 17..883 | 4320 | 99.9 | Plus |
| Prosalpha6-RA | 840 | CG4904-PA | 37..519 | 53..535 | 330 | 71.2 | Plus |
| Prosalpha6-RB | 840 | CG4904-PB | 37..519 | 53..535 | 330 | 71.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha6T-RA | 1020 | CG5648-RA | 69..936 | 16..883 | 4325 | 99.9 | Plus |
| Prosalpha6-RA | 1027 | CG4904-RA | 129..611 | 53..535 | 330 | 71.2 | Plus |
| Prosalpha6-RB | 1070 | CG4904-RB | 129..611 | 53..535 | 330 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13232107..13232974 | 16..883 | 4325 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10221547..10222029 | 53..535 | 330 | 71.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:18:07 has no hits.
BO16221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:04 Download gff for
BO16221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:13 Download gff for
BO16221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 69..942 | 16..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:26 Download gff for
BO16221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 75..936 | 22..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:04 Download gff for
BO16221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 69..942 | 16..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:56 Download gff for
BO16221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha6T-RA | 75..936 | 22..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:56 Download gff for
BO16221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13232113..13232974 | 22..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:26 Download gff for
BO16221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13232113..13232974 | 22..885 | 99 | | Plus |
BO16221.pep Sequence
Translation from 16 to 901
> BO16221.pep
MFRNQYDNDTTTWSPQGRLFQVEYAMEAVKQGAATVGLKGTDYAVLAALC
RTSKDTNTLQRKIMPVDDHVGMSIAGLTADARVVCQYMRTECMAYRHSYN
AEFPVRRLVSNLGNKLQTTTQRYDRRPYGVGLLVAGYDEQGPHIYQVMPT
ANVLNCKAMAIGSRSQSARTYLERNMESFEDCDMDELICHAIQAIRGSLG
SDDVENLTINVAIVGKDVPFKMFTEAENQKYVKLVKAMDPPLEADHDPLS
EEGMSDDDMTDHGPSSSGVPPNDTSDMETTASTGGSDAHASFLDH
BO16221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha6T-PA | 289 | CG5648-PA | 1..289 | 1..289 | 1517 | 100 | Plus |
| Prosalpha6-PA | 279 | CG4904-PA | 1..275 | 1..280 | 827 | 57.7 | Plus |
| Prosalpha6-PB | 279 | CG4904-PB | 1..275 | 1..280 | 827 | 57.7 | Plus |
| Prosalpha4-PA | 249 | CG3422-PA | 3..235 | 4..236 | 293 | 32.2 | Plus |
| Prosalpha4T2-PB | 252 | CG4569-PB | 4..222 | 5..222 | 291 | 32 | Plus |
