Clone Sequence Records
BO16224.5prime Sequence
641 bp (641 high quality bases) assembled on 2006-10-13
> BO16224.5prime
GAAGTTATCAGTCGACATGCAGCCGGTTCGATTCGGATCTCCTTGGATTA
TGGCCATTGGGCTGGTGCTACTACTGCTGGCATTCGTCTCCGCCGGAAAG
TCGCGTCAGCGTTCGCCAGCCAATTGCCCCACCATCAAGCTGAAGCGTCA
GTGGGGCGGCAAGCCTTCGTTGGGACTCCACTACCAAGTGCGTCCCATCC
GCTATGTGGTCATCCATCACACGGTCACCGGCGAGTGCAGCGGACTGCTC
AAGTGCGCCGAGATTCTCCAGAACATGCAGGCGTATCATCAGAACGAGCT
GGACTTCAACGATATTAGTTACAACTTCCTGATCGGCAACGATGGTATCG
TATACGAAGGCACTGGTTGGGGATTGCGCGGTGCCCACACCTATGGATAC
AATGCCATTGGCACGGGCATAGCCTTTATCGGCAACTTTGTGGATAAACT
TCCATCGGATGCGGCTCTCCAGGCGGCCAAAGATCTGCTGGCCTGCGGAG
TGCAGCAGGGTGAGCTGAGCGAGGATTACGCCCTGATCGCCGGCTCCCAG
GTGATCAGCACCCAGAGTCCCGGACTGACTCTATACAACGAGATCCAAGA
GTGGCCGCACTGGCTCTCAAATCCCGCAAGCTTTCTAGACC
BO16224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11709-PA | 612 | PGRP-SA-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SA-RB | 726 | CG11709-RB | 38..647 | 16..625 | 3050 | 100 | Plus |
PGRP-SA-RA | 1018 | CG11709-RA | 330..939 | 16..625 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11561972..11562280 | 16..324 | 1545 | 100 | Plus |
X | 23542271 | X | 11562518..11562700 | 443..625 | 915 | 100 | Plus |
X | 23542271 | X | 11562339..11562461 | 325..447 | 600 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:19:06 has no hits.
BO16224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:39 Download gff for
BO16224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11709-PA | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:21:32 Download gff for
BO16224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 322..942 | 7..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:34 Download gff for
BO16224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 322..942 | 7..629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:34 Download gff for
BO16224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11561964..11562280 | 7..324 | 98 | -> | Plus |
X | 11562339..11562457 | 325..443 | 100 | -> | Plus |
X | 11562519..11562703 | 444..629 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:21:32 Download gff for
BO16224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11455997..11456313 | 7..324 | 98 | -> | Plus |
arm_X | 11456372..11456490 | 325..443 | 100 | -> | Plus |
arm_X | 11456552..11456736 | 444..629 | 98 | | Plus |
BO16224.complete Sequence
643 bp assembled on 2007-03-23
GenBank Submission: FJ633738
> BO16224.complete
GAAGTTATCAGTCGACATGCAGCCGGTTCGATTCGGATCTCCTTGGATTA
TGGCCATTGGGCTGGTGCTACTACTGCTGGCATTCGTCTCCGCCGGAAAG
TCGCGTCAGCGTTCGCCAGCCAATTGCCCCACCATCAAGCTGAAGCGTCA
GTGGGGCGGCAAGCCTTCGTTGGGACTCCACTACCAAGTGCGTCCCATCC
GCTATGTGGTCATCCATCACACGGTCACCGGCGAGTGCAGCGGACTGCTC
AAGTGCGCCGAGATTCTCCAGAACATGCAGGCGTATCATCAGAACGAGCT
GGACTTCAACGATATTAGTTACAACTTCCTGATCGGCAACGATGGTATCG
TATACGAAGGCACTGGTTGGGGATTGCGCGGTGCCCACACCTATGGATAC
AATGCCATTGGCACGGGCATAGCCTTTATCGGCAACTTTGTGGATAAACT
TCCATCGGATGCGGCTCTCCAGGCGGCCAAAGATCTGCTGGCCTGCGGAG
TGCAGCAGGGTGAGCTGAGCGAGGATTACGCCCTGATCGCCGGCTCCCAG
GTGATCAGCACCCAGAGTCCCGGACTGACTCTATACAACGAGATCCAAGA
GTGGCCGCACTGGCTCTCAAATCCCGCAAGCTTTCTAGACCAT
BO16224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SA-RB | 612 | CG11709-PB | 1..609 | 17..625 | 3045 | 100 | Plus |
PGRP-SA-RA | 612 | CG11709-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SA-RB | 726 | CG11709-RB | 38..647 | 16..625 | 3050 | 100 | Plus |
PGRP-SA-RA | 1018 | CG11709-RA | 330..939 | 16..625 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11561972..11562280 | 16..324 | 1545 | 100 | Plus |
X | 23542271 | X | 11562518..11562700 | 443..625 | 915 | 100 | Plus |
X | 23542271 | X | 11562339..11562461 | 325..447 | 600 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:37:13 has no hits.
BO16224.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:09 Download gff for
BO16224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:12 Download gff for
BO16224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 436..1056 | 7..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:38 Download gff for
BO16224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 331..939 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:09 Download gff for
BO16224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 436..1056 | 7..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:41 Download gff for
BO16224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SA-RA | 331..939 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:41 Download gff for
BO16224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11561973..11562280 | 17..324 | 100 | -> | Plus |
X | 11562339..11562457 | 325..443 | 100 | -> | Plus |
X | 11562519..11562700 | 444..627 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:38 Download gff for
BO16224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11456006..11456313 | 17..324 | 100 | -> | Plus |
arm_X | 11456372..11456490 | 325..443 | 100 | -> | Plus |
arm_X | 11456552..11456733 | 444..627 | 98 | | Plus |
BO16224.pep Sequence
Translation from 16 to 643
> BO16224.pep
MQPVRFGSPWIMAIGLVLLLLAFVSAGKSRQRSPANCPTIKLKRQWGGKP
SLGLHYQVRPIRYVVIHHTVTGECSGLLKCAEILQNMQAYHQNELDFNDI
SYNFLIGNDGIVYEGTGWGLRGAHTYGYNAIGTGIAFIGNFVDKLPSDAA
LQAAKDLLACGVQQGELSEDYALIAGSQVISTQSPGLTLYNEIQEWPHWL
SNPASFLDH
BO16224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SA-PB | 203 | CG11709-PB | 1..203 | 1..203 | 1084 | 100 | Plus |
PGRP-SA-PA | 203 | CG11709-PA | 1..203 | 1..203 | 1084 | 100 | Plus |
PGRP-LE-PB | 345 | CG8995-PB | 198..337 | 60..199 | 358 | 49.3 | Plus |
PGRP-LE-PA | 345 | CG8995-PA | 198..337 | 60..199 | 358 | 49.3 | Plus |
PGRP-SC2-PA | 184 | CG14745-PA | 22..182 | 39..199 | 356 | 42.9 | Plus |