Clone BO16224 Report

Search the DGRC for BO16224

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-SA-RA
Protein status:BO16224.pep: validated full length
Sequenced Size:643

Clone Sequence Records

BO16224.5prime Sequence

641 bp (641 high quality bases) assembled on 2006-10-13

> BO16224.5prime
GAAGTTATCAGTCGACATGCAGCCGGTTCGATTCGGATCTCCTTGGATTA
TGGCCATTGGGCTGGTGCTACTACTGCTGGCATTCGTCTCCGCCGGAAAG
TCGCGTCAGCGTTCGCCAGCCAATTGCCCCACCATCAAGCTGAAGCGTCA
GTGGGGCGGCAAGCCTTCGTTGGGACTCCACTACCAAGTGCGTCCCATCC
GCTATGTGGTCATCCATCACACGGTCACCGGCGAGTGCAGCGGACTGCTC
AAGTGCGCCGAGATTCTCCAGAACATGCAGGCGTATCATCAGAACGAGCT
GGACTTCAACGATATTAGTTACAACTTCCTGATCGGCAACGATGGTATCG
TATACGAAGGCACTGGTTGGGGATTGCGCGGTGCCCACACCTATGGATAC
AATGCCATTGGCACGGGCATAGCCTTTATCGGCAACTTTGTGGATAAACT
TCCATCGGATGCGGCTCTCCAGGCGGCCAAAGATCTGCTGGCCTGCGGAG
TGCAGCAGGGTGAGCTGAGCGAGGATTACGCCCTGATCGCCGGCTCCCAG
GTGATCAGCACCCAGAGTCCCGGACTGACTCTATACAACGAGATCCAAGA
GTGGCCGCACTGGCTCTCAAATCCCGCAAGCTTTCTAGACC

BO16224.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11709-PA 612 PGRP-SA-RA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-RB 726 CG11709-RB 38..647 16..625 3050 100 Plus
PGRP-SA-RA 1018 CG11709-RA 330..939 16..625 3050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11561972..11562280 16..324 1545 100 Plus
X 23542271 X 11562518..11562700 443..625 915 100 Plus
X 23542271 X 11562339..11562461 325..447 600 99.2 Plus
Blast to na_te.dros performed on 2015-02-11 16:19:06 has no hits.

BO16224.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:39 Download gff for BO16224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11709-PA 1..612 17..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:21:32 Download gff for BO16224.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 322..942 7..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:34 Download gff for BO16224.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 322..942 7..629 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:34 Download gff for BO16224.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11561964..11562280 7..324 98 -> Plus
X 11562339..11562457 325..443 100 -> Plus
X 11562519..11562703 444..629 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:21:32 Download gff for BO16224.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11455997..11456313 7..324 98 -> Plus
arm_X 11456372..11456490 325..443 100 -> Plus
arm_X 11456552..11456736 444..629 98   Plus

BO16224.complete Sequence

643 bp assembled on 2007-03-23

GenBank Submission: FJ633738

> BO16224.complete
GAAGTTATCAGTCGACATGCAGCCGGTTCGATTCGGATCTCCTTGGATTA
TGGCCATTGGGCTGGTGCTACTACTGCTGGCATTCGTCTCCGCCGGAAAG
TCGCGTCAGCGTTCGCCAGCCAATTGCCCCACCATCAAGCTGAAGCGTCA
GTGGGGCGGCAAGCCTTCGTTGGGACTCCACTACCAAGTGCGTCCCATCC
GCTATGTGGTCATCCATCACACGGTCACCGGCGAGTGCAGCGGACTGCTC
AAGTGCGCCGAGATTCTCCAGAACATGCAGGCGTATCATCAGAACGAGCT
GGACTTCAACGATATTAGTTACAACTTCCTGATCGGCAACGATGGTATCG
TATACGAAGGCACTGGTTGGGGATTGCGCGGTGCCCACACCTATGGATAC
AATGCCATTGGCACGGGCATAGCCTTTATCGGCAACTTTGTGGATAAACT
TCCATCGGATGCGGCTCTCCAGGCGGCCAAAGATCTGCTGGCCTGCGGAG
TGCAGCAGGGTGAGCTGAGCGAGGATTACGCCCTGATCGCCGGCTCCCAG
GTGATCAGCACCCAGAGTCCCGGACTGACTCTATACAACGAGATCCAAGA
GTGGCCGCACTGGCTCTCAAATCCCGCAAGCTTTCTAGACCAT

BO16224.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-RB 612 CG11709-PB 1..609 17..625 3045 100 Plus
PGRP-SA-RA 612 CG11709-PA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-RB 726 CG11709-RB 38..647 16..625 3050 100 Plus
PGRP-SA-RA 1018 CG11709-RA 330..939 16..625 3050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11561972..11562280 16..324 1545 100 Plus
X 23542271 X 11562518..11562700 443..625 915 100 Plus
X 23542271 X 11562339..11562461 325..447 600 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 23:37:13 has no hits.

BO16224.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:09 Download gff for BO16224.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 1..612 17..629 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:12 Download gff for BO16224.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 436..1056 7..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:38 Download gff for BO16224.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 331..939 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:09 Download gff for BO16224.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 436..1056 7..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:41 Download gff for BO16224.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SA-RA 331..939 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:41 Download gff for BO16224.complete
Subject Subject Range Query Range Percent Splice Strand
X 11561973..11562280 17..324 100 -> Plus
X 11562339..11562457 325..443 100 -> Plus
X 11562519..11562700 444..627 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:38 Download gff for BO16224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11456006..11456313 17..324 100 -> Plus
arm_X 11456372..11456490 325..443 100 -> Plus
arm_X 11456552..11456733 444..627 98   Plus

BO16224.pep Sequence

Translation from 16 to 643

> BO16224.pep
MQPVRFGSPWIMAIGLVLLLLAFVSAGKSRQRSPANCPTIKLKRQWGGKP
SLGLHYQVRPIRYVVIHHTVTGECSGLLKCAEILQNMQAYHQNELDFNDI
SYNFLIGNDGIVYEGTGWGLRGAHTYGYNAIGTGIAFIGNFVDKLPSDAA
LQAAKDLLACGVQQGELSEDYALIAGSQVISTQSPGLTLYNEIQEWPHWL
SNPASFLDH

BO16224.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SA-PB 203 CG11709-PB 1..203 1..203 1084 100 Plus
PGRP-SA-PA 203 CG11709-PA 1..203 1..203 1084 100 Plus
PGRP-LE-PB 345 CG8995-PB 198..337 60..199 358 49.3 Plus
PGRP-LE-PA 345 CG8995-PA 198..337 60..199 358 49.3 Plus
PGRP-SC2-PA 184 CG14745-PA 22..182 39..199 356 42.9 Plus