Clone BO16225 Report

Search the DGRC for BO16225

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG13021-RA
Protein status:BO16225.pep: validated full length
Sequenced Size:364

Clone Sequence Records

BO16225.3prime Sequence

362 bp (362 high quality bases) assembled on 2006-10-13

> BO16225.3prime
ATGGTCTAGAAAGCTTGCATTGAGTTCTTCTTCCTTCCCAAAGGATCCTT
CGTCCTTATCAGCCCCCTCGAGTTCCCGCTTGATCGGATTACCGATTCGT
ACATTGATGATCCTTTGCTTGTCCTTGCGGCTATGTCCCTTTAATGACTT
AACAGTGAAGCCGAGGACAACGCAAGCCACAGTGGCCACGCCCACGCACA
TCAGAGCCTTGTGGGCGGGGCGCAGATTGCCCAGATTATTGCCCAAGTTC
TCCAGGCTGCCCAATCGTCCCAATCCTTTGGGCGCAACTTTAGGCAGAAG
TGCCAGCTGATCCGTCAAGTTGGACAGAAACTTTGAGTAGTCCGACATGT
CGACTGATAACT

BO16225.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13021-PA 333 CG13021-RA 1..330 348..19 1650 100 Minus
CG13021-PB 333 CG13021-RB 1..330 348..19 1650 100 Minus
CG13021-PC 333 CG13021-RC 1..330 348..19 1650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13021-RB 611 CG13021-RB 114..443 348..19 1650 100 Minus
CG13021-RA 597 CG13021-RA 100..429 348..19 1650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3515260..3515589 348..19 1650 100 Minus
Blast to na_te.dros performed 2015-02-08 12:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 2659..2709 345..297 105 72.5 Minus

BO16225.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:40 Download gff for BO16225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13021-PC 1..333 16..348 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:48 Download gff for BO16225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13021-RA 93..429 19..354 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:32 Download gff for BO16225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13021-RA 93..429 19..354 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:32 Download gff for BO16225.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3515253..3515589 19..354 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:48 Download gff for BO16225.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3409286..3409622 19..354 99   Minus

BO16225.5prime Sequence

362 bp (362 high quality bases) assembled on 2006-10-13

> BO16225.5prime
GAAGTTATCAGTCGACATGTCGGACTACTCAAAGTTTCTGTCCAACTTGA
CGGATCAGCTGGCACTTCTGCCTAAAGTTGCGCCCAAAGGATTGGGACGA
TTGGGCAGCCTGGAGAACTTGGGCAATAATCTGGGCAATCTGCGCCCCGC
CCACAAGGCTCTGATGTGCGTGGGCGTGGCCACTGTGGCTTGCGTTGTCC
TCGGCTTCACTGTTAAGTCATTAAAGGGACATAGCCGCAAGGACAAGCAA
AGGATCATCAATGTACGAATCGGTAATCCGATCAAGCGGGAACTCGAGGG
GGCTGATAAGGACGAAGGATCCTTTGGGAAGGAAGAAGAACTCAATGCAA
GCTTTCTAGACC

BO16225.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13021-PA 333 CG13021-RA 1..330 17..346 1650 100 Plus
CG13021-PB 333 CG13021-RB 1..330 17..346 1650 100 Plus
CG13021-PC 333 CG13021-RC 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13021-RB 611 CG13021-RB 114..443 17..346 1650 100 Plus
CG13021-RA 597 CG13021-RA 100..429 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3515260..3515589 17..346 1650 100 Plus
Blast to na_te.dros performed 2015-02-11 09:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 2659..2709 20..68 105 72.5 Plus

BO16225.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:41 Download gff for BO16225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13021-PC 1..333 17..349 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:06 Download gff for BO16225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13021-RA 93..429 11..346 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:41 Download gff for BO16225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13021-RA 93..429 11..346 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:41 Download gff for BO16225.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3515253..3515589 11..346 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:06 Download gff for BO16225.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3409286..3409622 11..346 99   Plus

BO16225.complete Sequence

364 bp assembled on 2006-10-11

GenBank Submission: FJ633739

> BO16225.complete
GAAGTTATCAGTCGACATGTCGGACTACTCAAAGTTTCTGTCCAACTTGA
CGGATCAGCTGGCACTTCTGCCTAAAGTTGCGCCCAAAGGATTGGGACGA
TTGGGCAGCCTGGAGAACTTGGGCAATAATCTGGGCAATCTGCGCCCCGC
CCACAAGGCTCTGATGTGCGTGGGCGTGGCCACTGTGGCTTGCGTTGTCC
TCGGCTTCACTGTTAAGTCATTAAAGGGACATAGCCGCAAGGACAAGCAA
AGGATCATCAATGTACGAATCGGTAATCCGATCAAGCGGGAACTCGAGGG
GGCTGATAAGGACGAAGGATCCTTTGGGAAGGAAGAAGAACTCAATGCAA
GCTTTCTAGACCAT

BO16225.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13021-RB 333 CG13021-PB 1..330 17..346 1650 100 Plus
CG13021-RA 333 CG13021-PA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13021-RB 611 CG13021-RB 114..443 17..346 1650 100 Plus
CG13021-RA 597 CG13021-RA 100..429 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3515260..3515589 17..346 1650 100 Plus
Blast to na_te.dros performed 2014-11-27 20:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 2659..2709 20..68 105 72.5 Plus

BO16225.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:06 Download gff for BO16225.complete
Subject Subject Range Query Range Percent Splice Strand
CG13021-RC 1..333 17..349 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:15 Download gff for BO16225.complete
Subject Subject Range Query Range Percent Splice Strand
CG13021-RC 330..666 11..346 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:12 Download gff for BO16225.complete
Subject Subject Range Query Range Percent Splice Strand
CG13021-RA 100..429 17..348 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:07 Download gff for BO16225.complete
Subject Subject Range Query Range Percent Splice Strand
CG13021-RC 330..666 11..346 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:05 Download gff for BO16225.complete
Subject Subject Range Query Range Percent Splice Strand
CG13021-RA 100..429 17..348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:05 Download gff for BO16225.complete
Subject Subject Range Query Range Percent Splice Strand
X 3515260..3515589 17..348 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:12 Download gff for BO16225.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3409293..3409622 17..348 99   Plus

BO16225.pep Sequence

Translation from 16 to 364

> BO16225.pep
MSDYSKFLSNLTDQLALLPKVAPKGLGRLGSLENLGNNLGNLRPAHKALM
CVGVATVACVVLGFTVKSLKGHSRKDKQRIINVRIGNPIKRELEGADKDE
GSFGKEEELNASFLDH

BO16225.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13021-PB 110 CG13021-PB 1..110 1..110 560 100 Plus
CG13021-PA 110 CG13021-PA 1..110 1..110 560 100 Plus