Clone Sequence Records
BO16229.3prime Sequence
863 bp (762 high quality bases) assembled on 2006-10-13
> BO16229.3prime
ATGGTCTAGAAAGCTTGCTACATGGTCCACCAAAAACTGCCCAAATCGCA
CCATAGTTGAGAGTGGGTGAATCATATAGACGAACAGCATGGCCAGAACG
GTGGCCTGCAGGACATATTCGGTGCGATCCGTATGCTCAAATCTTCGCTG
GTGGATAACGGTGATGGTGAAGAGGATGAGACTAGCCACGTAGATCAGAC
TGACCATCGAGACGTATCGCATTATATAGCGATTGCCGTTTAGATACACA
ATCAAGTAGATCGAAACGACAATCGCTATGCAACAGAATGTGAGGACGAT
CATGAAGATGCTACCGGGCAGTATTTTCAGCGGCAGATAGACGCCCATCA
AGTAGAGCATGACGTTCAGGGCCAGCACGAGTGACAGGACACCAGTCATC
CAGAGCATCGATAGACGCGCCCACCGGTGGCAATTCACAAATATCACTAT
CACCTCCACGATGACAATGGCCAGCAGACCATTGCACGGACACTGGTTGG
CCAGGTACACGTAGGCCATGATCAGCACACATCCCACGGCCAGGAGCAGC
CACACGAAGCTGGGCACCGATGGGCTAATTAGCTCCCCGAAGTCCTTATT
GCAGAGCCGCAGGACCACAAGCTGAATTACTGCACTTGCCGATAGAACCG
CGTGGATCAAGTAGACCCAACCGAGGTGTTTCTTCCTCAGGTGCACAGAA
GAGCGTTGGCGCAAAGGACCCGACGATGCGACCGGGCTCAGCAGGCCCGG
GGATTCTCCATATGGTTTCGCAGGCTCATGCGGTGGTGGAGCAGGAGCGG
GAACATGAGGTGGTGGCCTGGGTGGAGGTGTTGATCTTTGACCAGTCGGT
TTGCGTAAACCCG
BO16229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-PA | 882 | CG4073-RA | 35..879 | 863..19 | 4150 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-RA | 1104 | CG4073-RA | 168..1012 | 863..19 | 4180 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10714965..10715809 | 863..19 | 4180 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:11:43 has no hits.
BO16229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:46 Download gff for
BO16229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-PA | 35..882 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:08 Download gff for
BO16229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 168..1015 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:51 Download gff for
BO16229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 168..1015 | 15..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:51 Download gff for
BO16229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10714965..10715812 | 15..863 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:08 Download gff for
BO16229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6540687..6541534 | 15..863 | 99 | | Minus |
BO16229.5prime Sequence
860 bp (741 high quality bases) assembled on 2006-10-13
> BO16229.5prime
GAAGTTATCAGTCGACATGAGCAGGCCAAATCCCACGCCACGTTCATCGA
CGGGTCTACGCAAACCGACTGGTCAAAGATCAACACCTCCACCCAGGCCA
CCACCTCATGTTCCCGCTCCTGCTCCACCACCGCATGAGCCTGCGAAACC
ATATGGAGAATCCCCGGGCCTGCTGAGCCCGGTCGCATCGTCGGGTCCTT
TGCGCCAACGCTCTTCTGTGCACCTGAGGAAGAAACACCTCGGTTGGGTC
TACTTGATCCACGCGGTTCTATCGGCAAGTGCAGTAATTCAGCTTGTGGT
CCTGCGGCTCTGCAATAAGGACTTCGGGGAGCTAATTAGCCCATCGGTGC
CCAGCTTCGTGTGGCTGCTCCTGGCCGTGGGATGTGTGCTGATCATGGCC
TACGTGTACCTGGCCAACCAGTGTCCGTGCAATGGTCTGCTGGCCATTGT
CATCGTGGAGGTGATAGTGATATTTGTGAATTGCCACCGGTGGGCGCGTC
TATCGATGCTCTGGATGACTGGTGTCCTGTCACTCGTGCTGGCCCTGAAC
GTCATGCTCTACTTGATGGGCGTCTATCTGCCGCTGAAAATACTGCCCGG
TAGCATCTTCATGATCGTCCTCACATTCTGTTGCATAGCGATTGTCGTTT
CGATCTACTTGATTGTGTATCTAAACGGCAATCGCTATATAATGCGATAC
GTCTCGATGGTCAGTCTGATCTACGTGGCTAGTCTCATCCTCTTCACCAT
CACCGTTATCCACCAGCGAAAATTTGAGCATACGGATCGCACCGAATATG
TCCTGCAGGCCACCGTTCTGGCCATGCTGTTCGTCTATATGAATCACCCA
CTCTCAACTA
BO16229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-PA | 882 | CG4073-RA | 1..844 | 17..860 | 4120 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-RA | 1104 | CG4073-RA | 134..977 | 17..860 | 4160 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10714931..10715774 | 17..860 | 4160 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:15:31 has no hits.
BO16229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:46 Download gff for
BO16229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:28 Download gff for
BO16229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 127..976 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:52 Download gff for
BO16229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 127..976 | 9..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:52 Download gff for
BO16229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10714924..10715773 | 9..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:28 Download gff for
BO16229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6540646..6541495 | 9..859 | 99 | | Plus |
BO16229.complete Sequence
913 bp assembled on 2006-10-11
GenBank Submission: FJ633740
> BO16229.complete
GAAGTTATCAGTCGACATGAGCAGGCCAAATCCCACGCCACGTTCATCGA
CGGGTCTACGCAAACCGACTGGTCAAAGATCAACACCTCCACCCAGGCCA
CCACCTCATGTTCCCGCTCCTGCTCCACCACCGCATGAGCCTGCGAAACC
ATATGGAGAATCCCCGGGCCTGCTGAGCCCGGTCGCATCGTCGGGTCCTT
TGCGCCAACGCTCTTCTGTGCACCTGAGGAAGAAACACCTCGGTTGGGTC
TACTTGATCCACGCGGTTCTATCGGCAAGTGCAGTAATTCAGCTTGTGGT
CCTGCGGCTCTGCAATAAGGACTTCGGGGAGCTAATTAGCCCATCGGTGC
CCAGCTTCGTGTGGCTGCTCCTGGCCGTGGGATGTGTGCTGATCATGGCC
TACGTGTACCTGGCCAACCAGTGTCCGTGCAATGGTCTGCTGGCCATTGT
CATCGTGGAGGTGATAGTGATATTTGTGAATTGCCACCGGTGGGCGCGTC
TATCGATGCTCTGGATGACTGGTGTCCTGTCACTCGTGCTGGCCCTGAAC
GTCATGCTCTACTTGATGGGCGTCTATCTGCCGCTGAAAATACTGCCCGG
TAGCATCTTCATGATCGTCCTCACATTCTGTTGCATAGCGATTGTCGTTT
CGATCTACTTGATTGTGTATCTAAACGGCAATCGCTATATAATGCGATAC
GTCTCGATGGTCAGTCTGATCTACGTGGCTAGTCTCATCCTCTTCACCAT
CACCGTTATCCACCAGCGAAGATTTGAGCATACGGATCGCACCGAATATG
TCCTGCAGGCCACCGTTCTGGCCATGCTGTTCGTCTATATGATTCACCCA
CTCTCAACTATGGTGCGATTTGGGCAGTTTTTGGTGGACCATGTAGCAAG
CTTTCTAGACCAT
BO16229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-RA | 882 | CG4073-PA | 1..879 | 17..895 | 4365 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-RA | 1104 | CG4073-RA | 134..1012 | 17..895 | 4365 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10714931..10715809 | 17..895 | 4365 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:46:47 has no hits.
BO16229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:37 Download gff for
BO16229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:52 Download gff for
BO16229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 127..1015 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:36 Download gff for
BO16229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 134..1012 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:37 Download gff for
BO16229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 127..1015 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:27 Download gff for
BO16229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4073-RA | 134..1012 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:27 Download gff for
BO16229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10714931..10715809 | 17..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:36 Download gff for
BO16229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6540653..6541531 | 17..897 | 99 | | Plus |
BO16229.pep Sequence
Translation from 16 to 913
> BO16229.pep
MSRPNPTPRSSTGLRKPTGQRSTPPPRPPPHVPAPAPPPHEPAKPYGESP
GLLSPVASSGPLRQRSSVHLRKKHLGWVYLIHAVLSASAVIQLVVLRLCN
KDFGELISPSVPSFVWLLLAVGCVLIMAYVYLANQCPCNGLLAIVIVEVI
VIFVNCHRWARLSMLWMTGVLSLVLALNVMLYLMGVYLPLKILPGSIFMI
VLTFCCIAIVVSIYLIVYLNGNRYIMRYVSMVSLIYVASLILFTITVIHQ
RRFEHTDRTEYVLQATVLAMLFVYMIHPLSTMVRFGQFLVDHVASFLDH
BO16229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4073-PA | 293 | CG4073-PA | 1..293 | 1..293 | 1522 | 100 | Plus |
