Clone Sequence Records
BO16230.3prime Sequence
896 bp (887 high quality bases) assembled on 2006-10-13
> BO16230.3prime
ATGGTCTAGAAAGCTTGCATCGGTTGGCCCACCATAATCCCCATCGTTTC
GTTCAAGTTCACGTAGAAAACGCTCAACATCCCCAACTTGAGCGGCATTC
AAGGCCTCGCGATTGTCATCACTTTGCAATAGAGGCTCCAGACTCTTTCT
GAGTGCACCAGAATGAAGTCCTACGGAAAAAGAGGACAAGGATTCGTAGA
ATTGCGCCGAATGCAAATGCTCCAGTATGTCTGACTGCTCATCCATCGCC
TCATGATCTTTGGGCAATTGGGCCATTAGTTTTTCACGTCTCGATGGGCA
ACTTAGAACTTTGTCCACTGCTTCGGCGCCATGTAGGCGTAAAACAGCTG
CCAAATCGAATGTCTGTATACCCGACTCTGATGTATATGTATCTGTATCT
GTATCTGTATTTGCATCGGGATCGGCAAATGGCAAGGGCGGTTCTTCCAT
CGCATCACCAGTTTGCCAATGATTCAAACTCCGGTTAGCTGGTAGCCAAG
TTGCTTGCGTTTCGACCAGCATCTCTTCCAGAATTTGAGGATTCTCACTG
CCACCGAAACCGCGTCGTGCTGTTGTATGATCCGCATCCGTATCCATATC
GCCCTCGGCCGCCGCAATCTCATCCCTTTGGCGTTCACCACTGGCAATCA
ATTCATTGACCCGCTGACAAAATAACGCATCCCCATCCGCCTGCAGCTCC
TGCATCCAGAAAAAGTAACGCTGCGTCGATCGTGTATACTTTAGGACATA
AACCCGACCGGTTTTGCACTGATCAATGCGACGGAACTCGAGGACGCCCG
GCGTTGCTACAATATCCAGCTCAACGGACCCGGAACGCCGATCCATCCAG
TGGATATGGAGCTGATTATCATCGGCGGATCGGCGCACAAAGAGCA
BO16230.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6789-PA | 975 | CG6789-RA | 95..972 | 896..19 | 4365 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13R-RA | 1088 | CG6789-RA | 155..1032 | 896..19 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5132052..5132929 | 896..19 | 4375 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:15:47 has no hits.
BO16230.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:47 Download gff for
BO16230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6789-PA | 96..975 | 16..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:34 Download gff for
BO16230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 156..1036 | 15..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:25 Download gff for
BO16230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 156..1036 | 15..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:25 Download gff for
BO16230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5132053..5132933 | 15..895 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:34 Download gff for
BO16230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5026086..5026966 | 15..895 | 99 | | Minus |
BO16230.5prime Sequence
874 bp (831 high quality bases) assembled on 2006-10-13
> BO16230.5prime
GAAGTTATCAGTCGACATGGCCCAGTCGAATGCACACAATTTGGTCGAGT
ACAAGGCCGGCCGCATGGTCCTTCTAGGCAAGATGGTCGAACCCGATGAC
CGCAAAGGACTGCTCTTTGTGCGCCGATCCGCCGATGATAATCAGCTCCA
TATCCACTGGATGGATCGGCGTTCCGGGTCCGTTGAGCTGGATATTGTAG
CAACGCCGGGCGTCCTCGAGTTCCGTCGCATTGATCAGTGCAAAACCGGT
CGGGTTTATGTCCTAAAGTATACACGATCGACGCAGCGTTACTTTTTCTG
GATGCAGGAGCTGCAGGCGGATGGGGATGCGTTATTTTGTCAGCGGGTCA
ATGAATTGATTGCCAGTGGTGAACGCCAAAGGGATGAGATTGCGGCGGCC
GAGGGCGATATGGATACGGATGCGGATCATACAACAGCACGACGCGGTTT
CGGTGGCAGTGAGAATCCTCAAATTCTGGAAGAGATGCTGGTCGAAACGC
AAGCAACTTGGCTACCAGCTAACCGGAGTTTGAATCATTGGCAAACTGGT
GATGCGATGGAAGAACCGCCCTTGCCATTTGCCGATCCCGATGCAAATAC
AGATACAGATACAGATACATATACATCAGAGTCGGGTATACAGACATTCG
ATTTGGCAGCTGTTTTACGCCTACATGGCGCCGAAGCAGTGGACAAAGTT
CTAAGTTGCCCATCGAGACGTGAAAAACTAATGGCCCAATTGCCCAAAGA
TCATGAGGCGATGGATGAGCAGTCAGACATACTGGAGCATTTGCATTCGG
CGCAATTCTACGAATCCTTGTCCTCTTTTTCCGTAGGACTTCATTCTGGT
GCACTCAGAAAGAGTCTGGAGCCT
BO16230.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6789-PA | 975 | CG6789-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13R-RA | 1088 | CG6789-RA | 59..918 | 15..874 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5131956..5132815 | 15..874 | 4300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:50:30 has no hits.
BO16230.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:47 Download gff for
BO16230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6789-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:29 Download gff for
BO16230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 52..918 | 3..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:43 Download gff for
BO16230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 52..918 | 3..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:43 Download gff for
BO16230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5131949..5132815 | 3..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:29 Download gff for
BO16230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5025982..5026848 | 3..874 | 99 | | Plus |
BO16230.complete Sequence
1006 bp assembled on 2006-10-11
GenBank Submission: FJ633741
> BO16230.complete
GAAGTTATCAGTCGACATGGCCCAGTCGAATGCACACAATTTGGTCGAGT
ACAAGGCCGGCCGCATGGTCCTTCTAGGCAAGATGGTCGAACCCGATGAC
CGCAAAGGACTGCTCTTTGTGCGCCGATCCGCCGATGATAATCAGCTCCA
TATCCACTGGATGGATCGGCGTTCCGGGTCCGTTGAGCTGGATATTGTAG
CAACGCCGGGCGTCCTCGAGTTCCGTCGCATTGATCAGTGCAAAACCGGT
CGGGTTTATGTCCTAAAGTATACACGATCGACGCAGCGTTACTTTTTCTG
GATGCAGGAGCTGCAGGCGGATGGGGATGCGTTATTTTGTCAGCGGGTCA
ATGAATTGATTGCCAGTGGTGAACGCCAAAGGGATGAGATTGCGGCGGCC
GAGGGCGATATGGATACGGATGCGGATCATACAACAGCACGACGCGGTTT
CGGTGGCAGTGAGAATCCTCAAATTCTGGAAGAGATGCTGGTCGAAACGC
AAGCAACTTGGCTACCAGCTAACCGGAGTTTGAATCATTGGCAAACTGGT
GATGCGATGGAAGAACCGCCCTTGCCATTTGCCGATCCCGATGCAAATAC
AGATACAGATACAGATACATATACATCAGAGTCGGGTATACAGACATTCG
ATTTGGCAGCTGTTTTACGCCTACATGGCGCCGAAGCAGTGGACAAAGTT
CTAAGTTGCCCATCGAGACGTGAAAAACTAATGGCCCAATTGCCCAAAGA
TCATGAGGCGATGGATGAGCAGTCAGACATACTGGAGCATTTGCATTCGG
CGCAATTCTACGAATCCTTGTCCTCTTTTTCCGTAGGACTTCATTCTGGT
GCACTCAGAAAGAGTCTGGAGCCTCTATTGCAAAGTGATGACAATCGCGA
GGCCTTGAATGCCGCTCAAGTTGGGGATGTTGAGCGTTTTCTACGTGAAC
TTGAACGAAACGATGGGGATTATGGTGGGCCAACCGATGCAAGCTTTCTA
GACCAT
BO16230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13R-RA | 975 | CG6789-PA | 1..972 | 17..988 | 4845 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13R-RA | 1088 | CG6789-RA | 59..1032 | 15..988 | 4855 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5131956..5132929 | 15..988 | 4855 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:47:04 has no hits.
BO16230.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:25 Download gff for
BO16230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6789-RA | 1..975 | 17..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:41 Download gff for
BO16230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6789-RA | 52..1036 | 3..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:35 Download gff for
BO16230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 61..1032 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:26 Download gff for
BO16230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6789-RA | 52..1036 | 3..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:10 Download gff for
BO16230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13R-RA | 61..1032 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:10 Download gff for
BO16230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5131958..5132929 | 17..990 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:35 Download gff for
BO16230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5025991..5026962 | 17..990 | 99 | | Plus |
BO16230.pep Sequence
Translation from 16 to 1006
> BO16230.pep
MAQSNAHNLVEYKAGRMVLLGKMVEPDDRKGLLFVRRSADDNQLHIHWMD
RRSGSVELDIVATPGVLEFRRIDQCKTGRVYVLKYTRSTQRYFFWMQELQ
ADGDALFCQRVNELIASGERQRDEIAAAEGDMDTDADHTTARRGFGGSEN
PQILEEMLVETQATWLPANRSLNHWQTGDAMEEPPLPFADPDANTDTDTD
TYTSESGIQTFDLAAVLRLHGAEAVDKVLSCPSRREKLMAQLPKDHEAMD
EQSDILEHLHSAQFYESLSSFSVGLHSGALRKSLEPLLQSDDNREALNAA
QVGDVERFLRELERNDGDYGGPTDASFLDH
BO16230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13R-PA | 324 | CG6789-PA | 1..324 | 1..324 | 1689 | 100 | Plus |
| Rpn13-PF | 389 | CG13349-PF | 10..358 | 2..326 | 435 | 32.5 | Plus |
| Rpn13-PB | 389 | CG13349-PB | 10..358 | 2..326 | 435 | 32.5 | Plus |
| Rpn13-PA | 389 | CG13349-PA | 10..358 | 2..326 | 435 | 32.5 | Plus |
| Rpn13-PE | 424 | CG13349-PE | 10..393 | 2..326 | 420 | 31.4 | Plus |
