Clone Sequence Records
BO16231.3prime Sequence
916 bp (795 high quality bases) assembled on 2006-10-13
> BO16231.3prime
ATGGTCTAGAAAGCTTGCCTCGGCTTCTTCTACAGGCGCCTTTTGGGTGT
CCCCGCCCCCAGCTGCTCCTGCCTCGGCCTCGTCCTCCGGTTGCTCCGAC
TCATCGTCATCGTCGTTATGGTAAAGAACCTTGCGTATATAGCGGGCCAC
CAGCTCCTGTGGTCTCTTCTCCCATTTGGACAAAACATCATGTGGCGTTT
TGATTTGATCCCCATTTAGGCGATTCAGGATGGCCACACAGACGACCGCG
CCCCTGATGTTGGCCCTACTGGTGAGGGCGGCAAAGGCCAAGCTCTCCAT
CTCGATATTCTTCACCTGCTGGCTCTGCAGCGTCTCCAAGTAGGATTTCT
TCATTTCGGGCGTGTACTCGCAGAAGGCTCCATCGAGGCGCGACTGGCCT
TCGTAGAAGTCATGGGCACACAGAGTCCGGCCGATGACAGCTTCATATTT
GTCCTTGCAGGGATCGTGGCACATCTTGATTTCATCGGCCAGACTCTCAT
CGAGCTGGCTGGCATGCTGGACACTGACGCCGTGCACAAGGATCTCGTGG
ACGGGATTCAAGCGACCATCAATCGCCTCGGAGGAAATGATCACGGTGCC
GGGTTCAACGCCAATGCCGCCGCTGGTGCCAATTCTGATGAAGACGGGGT
CCTTGCACTTGGCGTGGTACATCATCTTGATGAGTTCGTGCAGCAGTATG
GAGATCGACGGACAACCCATTCCGTGGCTGGCGCAGAGCACGGGACCCAC
CTTGAACAAGGAGAATCGCTGGCCGGCCTCCGATATGTTTCGTAGCTTGG
TAGCCGCGTTTATCTTCAGCCCGATCTCCTGCATCACGTAGTAGGCAAAG
TTTTCCATCCGACCCGGAGTACCTCCCATGCATACAAACCTCACATCACC
AAAAAACCTTGGGAAA
BO16231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-PA | 1137 | CG3788-RA | 248..1134 | 905..19 | 4385 | 99.7 | Minus |
CG6330-PB | 1044 | CG6330-RB | 388..434 | 681..635 | 185 | 95.7 | Minus |
CG6330-PA | 1107 | CG6330-RA | 451..497 | 681..635 | 185 | 95.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-RB | 1758 | CG3788-RB | 776..1672 | 916..19 | 4435 | 99.7 | Minus |
CG3788-RA | 1296 | CG3788-RA | 314..1210 | 916..19 | 4435 | 99.7 | Minus |
CG6330-RA | 1541 | CG6330-RA | 501..677 | 763..587 | 345 | 79.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22932364..22933048 | 205..889 | 3395 | 99.7 | Plus |
2R | 25286936 | 2R | 22932121..22932306 | 19..204 | 930 | 100 | Plus |
3R | 32079331 | 3R | 26951118..26951294 | 587..763 | 345 | 79.7 | Plus |
Blast to na_te.dros performed 2015-02-02 18:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 882..907 | 40..15 | 112 | 92.3 | Minus |
BO16231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:48 Download gff for
BO16231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-PA | 241..1137 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:34 Download gff for
BO16231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 317..1214 | 14..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:38 Download gff for
BO16231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 317..1214 | 14..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:38 Download gff for
BO16231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22932117..22932306 | 14..204 | 98 | <- | Plus |
2R | 22932364..22933047 | 205..888 | 99 | <- | Plus |
2R | 22933119..22933142 | 889..913 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:34 Download gff for
BO16231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18819640..18819829 | 14..204 | 98 | <- | Plus |
arm_2R | 18819887..18820570 | 205..888 | 99 | <- | Plus |
arm_2R | 18820642..18820665 | 889..913 | 96 | | Plus |
BO16231.5prime Sequence
850 bp (809 high quality bases) assembled on 2006-10-13
> BO16231.5prime
GAAGTTATCAGTCGACATGTCCAAAAGCAACTGCAGTGACTGCACATGCC
GTTTGGCCAACGAGGTGGGCCAGCTAAAGGCCATCGTGAATGCCCAGAGC
AGGACGCTCGCCAAGCTGGTCCGTCAGATGAAGGAAGGCTGCAAAAAGGA
CGAGGAGGCCAAGGAATCCACATTGTGCGGCCTGAATCCCTGCCTGAAGT
GCCTGCAGCCTGACATACTCTACCACCTGGGCCTGAATACGGAGACCACG
GACTTTCCCAAGGTTTTTGGTGATGTGAGGTTTGTATGCATGGGAGGTAC
TCCGGGTCGGATGGAAAACTTTGCCTACTACGTGATGCAGGAGATCGGGC
TGAAGATAAACGCGGCTACCAAGCTACGGAACATATCGGAGGCCGGCCAG
CGATTCTCCTTGTTCAAGGTGGGTCCCGTGCTCTGCGCCAGCCACGGAAT
GGGTTGTCCGTCGATCTCCATACTGCTGCACGAACTCATCAAGATGATGT
ACCACGCCAAGTGCAAGGACCCCGTCTTCATCAGAATTGGCACCAGCGGC
GGCATTGGCGTTGAACCCGGCACCGTGATCATTTCCTCCGAGGCGATTGA
TGGTCGCTTGAATCCCGTCCACGAGATCCTTGTGCACGGCGTCAGTGTCC
AGCATGCCAGCCAGCTCGATGAGAGTCTGGCCGATGAAATCAAGATGTGC
CACGATCCCTGCAAGGACAAATATGAAGCTGTCATCGGCCGGACTCTGTG
TGCCCATGACTTCTACGAAGGCCAGTCGCGCCTCGATGGAGCCTTCTGCG
AGTACACGCCCGAAATGAAGAAATCCTACTTGGAGACGCTGCAGAGCCAG
BO16231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-PA | 1137 | CG3788-RA | 1..834 | 17..850 | 4145 | 99.8 | Plus |
CG6330-PB | 1044 | CG6330-RB | 388..434 | 488..534 | 185 | 95.7 | Plus |
CG6330-PA | 1107 | CG6330-RA | 451..497 | 488..534 | 185 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-RB | 1758 | CG3788-RB | 539..1372 | 17..850 | 4155 | 99.9 | Plus |
CG3788-RA | 1296 | CG3788-RA | 77..910 | 17..850 | 4155 | 99.9 | Plus |
CG6330-RA | 1541 | CG6330-RA | 501..677 | 406..582 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22932478..22933048 | 850..280 | 2840 | 99.8 | Minus |
2R | 25286936 | 2R | 22933119..22933319 | 280..80 | 1005 | 100 | Minus |
3R | 32079331 | 3R | 26951118..26951294 | 582..406 | 345 | 79.7 | Minus |
2R | 25286936 | 2R | 22933384..22933447 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:37:44 has no hits.
BO16231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:49 Download gff for
BO16231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:09 Download gff for
BO16231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..910 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:45 Download gff for
BO16231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..910 | 17..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:45 Download gff for
BO16231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22932478..22933047 | 281..850 | 99 | <- | Minus |
2R | 22933119..22933318 | 81..280 | 100 | <- | Minus |
2R | 22933384..22933447 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:09 Download gff for
BO16231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18820001..18820570 | 281..850 | 99 | <- | Minus |
arm_2R | 18820642..18820841 | 81..280 | 100 | <- | Minus |
arm_2R | 18820907..18820970 | 17..80 | 100 | | Minus |
BO16231.complete Sequence
1168 bp assembled on 2006-10-11
GenBank Submission: FJ633742
> BO16231.complete
GAAGTTATCAGTCGACATGTCCAAAAGCAACTGCAGTGACTGCACATGCC
GTTTGGCCAACGAGGTGGGCCAGCTAAAGGCCATCGTGAATGCCCAGAGC
AGGACGCTCGCCAAGCTGGTCCGTCAGATGAAGGAAGGCTGCAAAAAGGA
CGAGGAGGCCAAGGAATCCACATTGTGCGGCCTGAATCCCTGCCTGAAGT
GCCTGCAGCCTGACATACTCTACCACCTGGGCCTGAATACGGAGACCACG
GACTTTCCCAAGGTTTTTGGTGATGTGAGGTTTGTATGCATGGGAGGTAC
TCCGGGTCGGATGGAAAACTTTGCCTACTACGTGATGCAGGAGATCGGGC
TGAAGATAAACGCGGCTACCAAGCTACGGAACATATCGGAGGCCGGCCAG
CGATTCTCCTTGTTCAAGGTGGGTCCCGTGCTCTGCGCCAGCCACGGAAT
GGGTTGTCCGTCGATCTCCATACTGCTGCACGAACTCATCAAGATGATGT
ACCACGCCAAGTGCAAGGACCCCGTCTTCATCAGAATTGGCACCAGCGGC
GGCATTGGCGTTGAACCCGGCACCGTGATCATTTCCTCCGAGGCGATTGA
TGGTCGCTTGAATCCCGTCCACGAGATCCTTGTGCACGGCGTCAGTGTCC
AGCATGCCAGCCAGCTCGATGAGAGTCTGGCCGATGAAATCAAGATGTGC
CACGATCCCTGCAAGGACAAATATGAAGCTGTCATCGGCCGGACTCTGTG
TGCCCATGACTTCTACGAAGGCCAGTCGCGCCTCGATGGAGCCTTCTGCG
AGTACACGCCCGAAATGAAGAAATCCTACTTGGAGACGCTGCAGAGCCAG
CAGGTGAAGAATATCGAGATGGAGAGCTTGGCCTTTGCCGCCCTCACCAG
TAGGGCCAACATCAGGGGCGCGGTCGTCTGTGTGGCCATCCTGAATCGCC
TAAATGGGGATCAAATCAAAACGCCACATGATGTTTTGTCCAAATGGGAG
AAGAGACCACAGGAGCTGGTGGCCCGCTATATACGCAAGGTTCTTTACCA
TAACGACGATGACGATGAGTCGGAGCAACCGGAGGACGAGGCCGAGGCAG
GAGCAGCTGGGGGCGGGGACACCCAAAAGGCGCCTGTAGAAGAAGCCGAG
GCAAGCTTTCTAGACCAT
BO16231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-RB | 1137 | CG3788-PB | 1..1134 | 17..1150 | 5655 | 99.9 | Plus |
CG3788-RA | 1137 | CG3788-PA | 1..1134 | 17..1150 | 5655 | 99.9 | Plus |
CG6330-RA | 1107 | CG6330-PA | 369..545 | 406..582 | 345 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-RB | 1758 | CG3788-RB | 539..1672 | 17..1150 | 5655 | 99.9 | Plus |
CG3788-RA | 1296 | CG3788-RA | 77..1210 | 17..1150 | 5655 | 99.9 | Plus |
CG6330-RA | 1541 | CG6330-RA | 501..677 | 406..582 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22932364..22933048 | 964..280 | 3410 | 99.9 | Minus |
2R | 25286936 | 2R | 22933119..22933319 | 280..80 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 22932121..22932306 | 1150..965 | 930 | 100 | Minus |
3R | 32079331 | 3R | 26951118..26951294 | 582..406 | 345 | 79.7 | Minus |
2R | 25286936 | 2R | 22933384..22933447 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 882..907 | 1129..1154 | 112 | 92.3 | Plus |
BO16231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:39 Download gff for
BO16231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 1..1137 | 17..1154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:40 Download gff for
BO16231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..1214 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:22 Download gff for
BO16231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..1210 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:39 Download gff for
BO16231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..1214 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:51 Download gff for
BO16231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3788-RA | 77..1210 | 17..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:51 Download gff for
BO16231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22932119..22932306 | 965..1152 | 98 | <- | Minus |
2R | 22932364..22933047 | 281..964 | 99 | <- | Minus |
2R | 22933119..22933318 | 81..280 | 100 | <- | Minus |
2R | 22933384..22933447 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:22 Download gff for
BO16231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18819642..18819829 | 965..1152 | 98 | <- | Minus |
arm_2R | 18819887..18820570 | 281..964 | 99 | <- | Minus |
arm_2R | 18820642..18820841 | 81..280 | 100 | <- | Minus |
arm_2R | 18820907..18820970 | 17..80 | 100 | | Minus |
BO16231.pep Sequence
Translation from 16 to 1168
> BO16231.pep
MSKSNCSDCTCRLANEVGQLKAIVNAQSRTLAKLVRQMKEGCKKDEEAKE
STLCGLNPCLKCLQPDILYHLGLNTETTDFPKVFGDVRFVCMGGTPGRME
NFAYYVMQEIGLKINAATKLRNISEAGQRFSLFKVGPVLCASHGMGCPSI
SILLHELIKMMYHAKCKDPVFIRIGTSGGIGVEPGTVIISSEAIDGRLNP
VHEILVHGVSVQHASQLDESLADEIKMCHDPCKDKYEAVIGRTLCAHDFY
EGQSRLDGAFCEYTPEMKKSYLETLQSQQVKNIEMESLAFAALTSRANIR
GAVVCVAILNRLNGDQIKTPHDVLSKWEKRPQELVARYIRKVLYHNDDDD
ESEQPEDEAEAGAAGGGDTQKAPVEEAEASFLDH
BO16231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3788-PB | 378 | CG3788-PB | 1..378 | 1..378 | 1984 | 100 | Plus |
CG3788-PA | 378 | CG3788-PA | 1..378 | 1..378 | 1984 | 100 | Plus |
CG6330-PB | 347 | CG6330-PB | 18..317 | 46..346 | 932 | 57.5 | Plus |
CG6330-PA | 368 | CG6330-PA | 50..338 | 57..346 | 928 | 59 | Plus |
CG17224-PD | 300 | CG17224-PD | 9..298 | 56..343 | 596 | 40.4 | Plus |