Clone BO16231 Report

Search the DGRC for BO16231

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG3788-RA
Protein status:BO16231.pep: validated full length
Sequenced Size:1168

Clone Sequence Records

BO16231.3prime Sequence

916 bp (795 high quality bases) assembled on 2006-10-13

> BO16231.3prime
ATGGTCTAGAAAGCTTGCCTCGGCTTCTTCTACAGGCGCCTTTTGGGTGT
CCCCGCCCCCAGCTGCTCCTGCCTCGGCCTCGTCCTCCGGTTGCTCCGAC
TCATCGTCATCGTCGTTATGGTAAAGAACCTTGCGTATATAGCGGGCCAC
CAGCTCCTGTGGTCTCTTCTCCCATTTGGACAAAACATCATGTGGCGTTT
TGATTTGATCCCCATTTAGGCGATTCAGGATGGCCACACAGACGACCGCG
CCCCTGATGTTGGCCCTACTGGTGAGGGCGGCAAAGGCCAAGCTCTCCAT
CTCGATATTCTTCACCTGCTGGCTCTGCAGCGTCTCCAAGTAGGATTTCT
TCATTTCGGGCGTGTACTCGCAGAAGGCTCCATCGAGGCGCGACTGGCCT
TCGTAGAAGTCATGGGCACACAGAGTCCGGCCGATGACAGCTTCATATTT
GTCCTTGCAGGGATCGTGGCACATCTTGATTTCATCGGCCAGACTCTCAT
CGAGCTGGCTGGCATGCTGGACACTGACGCCGTGCACAAGGATCTCGTGG
ACGGGATTCAAGCGACCATCAATCGCCTCGGAGGAAATGATCACGGTGCC
GGGTTCAACGCCAATGCCGCCGCTGGTGCCAATTCTGATGAAGACGGGGT
CCTTGCACTTGGCGTGGTACATCATCTTGATGAGTTCGTGCAGCAGTATG
GAGATCGACGGACAACCCATTCCGTGGCTGGCGCAGAGCACGGGACCCAC
CTTGAACAAGGAGAATCGCTGGCCGGCCTCCGATATGTTTCGTAGCTTGG
TAGCCGCGTTTATCTTCAGCCCGATCTCCTGCATCACGTAGTAGGCAAAG
TTTTCCATCCGACCCGGAGTACCTCCCATGCATACAAACCTCACATCACC
AAAAAACCTTGGGAAA

BO16231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-PA 1137 CG3788-RA 248..1134 905..19 4385 99.7 Minus
CG6330-PB 1044 CG6330-RB 388..434 681..635 185 95.7 Minus
CG6330-PA 1107 CG6330-RA 451..497 681..635 185 95.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-RB 1758 CG3788-RB 776..1672 916..19 4435 99.7 Minus
CG3788-RA 1296 CG3788-RA 314..1210 916..19 4435 99.7 Minus
CG6330-RA 1541 CG6330-RA 501..677 763..587 345 79.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22932364..22933048 205..889 3395 99.7 Plus
2R 25286936 2R 22932121..22932306 19..204 930 100 Plus
3R 32079331 3R 26951118..26951294 587..763 345 79.7 Plus
Blast to na_te.dros performed 2015-02-02 18:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 882..907 40..15 112 92.3 Minus

BO16231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:48 Download gff for BO16231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-PA 241..1137 15..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:34 Download gff for BO16231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 317..1214 14..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:38 Download gff for BO16231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 317..1214 14..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:38 Download gff for BO16231.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22932117..22932306 14..204 98 <- Plus
2R 22932364..22933047 205..888 99 <- Plus
2R 22933119..22933142 889..913 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:34 Download gff for BO16231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18819640..18819829 14..204 98 <- Plus
arm_2R 18819887..18820570 205..888 99 <- Plus
arm_2R 18820642..18820665 889..913 96   Plus

BO16231.5prime Sequence

850 bp (809 high quality bases) assembled on 2006-10-13

> BO16231.5prime
GAAGTTATCAGTCGACATGTCCAAAAGCAACTGCAGTGACTGCACATGCC
GTTTGGCCAACGAGGTGGGCCAGCTAAAGGCCATCGTGAATGCCCAGAGC
AGGACGCTCGCCAAGCTGGTCCGTCAGATGAAGGAAGGCTGCAAAAAGGA
CGAGGAGGCCAAGGAATCCACATTGTGCGGCCTGAATCCCTGCCTGAAGT
GCCTGCAGCCTGACATACTCTACCACCTGGGCCTGAATACGGAGACCACG
GACTTTCCCAAGGTTTTTGGTGATGTGAGGTTTGTATGCATGGGAGGTAC
TCCGGGTCGGATGGAAAACTTTGCCTACTACGTGATGCAGGAGATCGGGC
TGAAGATAAACGCGGCTACCAAGCTACGGAACATATCGGAGGCCGGCCAG
CGATTCTCCTTGTTCAAGGTGGGTCCCGTGCTCTGCGCCAGCCACGGAAT
GGGTTGTCCGTCGATCTCCATACTGCTGCACGAACTCATCAAGATGATGT
ACCACGCCAAGTGCAAGGACCCCGTCTTCATCAGAATTGGCACCAGCGGC
GGCATTGGCGTTGAACCCGGCACCGTGATCATTTCCTCCGAGGCGATTGA
TGGTCGCTTGAATCCCGTCCACGAGATCCTTGTGCACGGCGTCAGTGTCC
AGCATGCCAGCCAGCTCGATGAGAGTCTGGCCGATGAAATCAAGATGTGC
CACGATCCCTGCAAGGACAAATATGAAGCTGTCATCGGCCGGACTCTGTG
TGCCCATGACTTCTACGAAGGCCAGTCGCGCCTCGATGGAGCCTTCTGCG
AGTACACGCCCGAAATGAAGAAATCCTACTTGGAGACGCTGCAGAGCCAG

BO16231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-PA 1137 CG3788-RA 1..834 17..850 4145 99.8 Plus
CG6330-PB 1044 CG6330-RB 388..434 488..534 185 95.7 Plus
CG6330-PA 1107 CG6330-RA 451..497 488..534 185 95.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-RB 1758 CG3788-RB 539..1372 17..850 4155 99.9 Plus
CG3788-RA 1296 CG3788-RA 77..910 17..850 4155 99.9 Plus
CG6330-RA 1541 CG6330-RA 501..677 406..582 345 79.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22932478..22933048 850..280 2840 99.8 Minus
2R 25286936 2R 22933119..22933319 280..80 1005 100 Minus
3R 32079331 3R 26951118..26951294 582..406 345 79.7 Minus
2R 25286936 2R 22933384..22933447 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:37:44 has no hits.

BO16231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:49 Download gff for BO16231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-PA 1..834 17..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:09 Download gff for BO16231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..910 17..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:45 Download gff for BO16231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..910 17..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:45 Download gff for BO16231.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22932478..22933047 281..850 99 <- Minus
2R 22933119..22933318 81..280 100 <- Minus
2R 22933384..22933447 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:09 Download gff for BO16231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18820001..18820570 281..850 99 <- Minus
arm_2R 18820642..18820841 81..280 100 <- Minus
arm_2R 18820907..18820970 17..80 100   Minus

BO16231.complete Sequence

1168 bp assembled on 2006-10-11

GenBank Submission: FJ633742

> BO16231.complete
GAAGTTATCAGTCGACATGTCCAAAAGCAACTGCAGTGACTGCACATGCC
GTTTGGCCAACGAGGTGGGCCAGCTAAAGGCCATCGTGAATGCCCAGAGC
AGGACGCTCGCCAAGCTGGTCCGTCAGATGAAGGAAGGCTGCAAAAAGGA
CGAGGAGGCCAAGGAATCCACATTGTGCGGCCTGAATCCCTGCCTGAAGT
GCCTGCAGCCTGACATACTCTACCACCTGGGCCTGAATACGGAGACCACG
GACTTTCCCAAGGTTTTTGGTGATGTGAGGTTTGTATGCATGGGAGGTAC
TCCGGGTCGGATGGAAAACTTTGCCTACTACGTGATGCAGGAGATCGGGC
TGAAGATAAACGCGGCTACCAAGCTACGGAACATATCGGAGGCCGGCCAG
CGATTCTCCTTGTTCAAGGTGGGTCCCGTGCTCTGCGCCAGCCACGGAAT
GGGTTGTCCGTCGATCTCCATACTGCTGCACGAACTCATCAAGATGATGT
ACCACGCCAAGTGCAAGGACCCCGTCTTCATCAGAATTGGCACCAGCGGC
GGCATTGGCGTTGAACCCGGCACCGTGATCATTTCCTCCGAGGCGATTGA
TGGTCGCTTGAATCCCGTCCACGAGATCCTTGTGCACGGCGTCAGTGTCC
AGCATGCCAGCCAGCTCGATGAGAGTCTGGCCGATGAAATCAAGATGTGC
CACGATCCCTGCAAGGACAAATATGAAGCTGTCATCGGCCGGACTCTGTG
TGCCCATGACTTCTACGAAGGCCAGTCGCGCCTCGATGGAGCCTTCTGCG
AGTACACGCCCGAAATGAAGAAATCCTACTTGGAGACGCTGCAGAGCCAG
CAGGTGAAGAATATCGAGATGGAGAGCTTGGCCTTTGCCGCCCTCACCAG
TAGGGCCAACATCAGGGGCGCGGTCGTCTGTGTGGCCATCCTGAATCGCC
TAAATGGGGATCAAATCAAAACGCCACATGATGTTTTGTCCAAATGGGAG
AAGAGACCACAGGAGCTGGTGGCCCGCTATATACGCAAGGTTCTTTACCA
TAACGACGATGACGATGAGTCGGAGCAACCGGAGGACGAGGCCGAGGCAG
GAGCAGCTGGGGGCGGGGACACCCAAAAGGCGCCTGTAGAAGAAGCCGAG
GCAAGCTTTCTAGACCAT

BO16231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-RB 1137 CG3788-PB 1..1134 17..1150 5655 99.9 Plus
CG3788-RA 1137 CG3788-PA 1..1134 17..1150 5655 99.9 Plus
CG6330-RA 1107 CG6330-PA 369..545 406..582 345 79.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-RB 1758 CG3788-RB 539..1672 17..1150 5655 99.9 Plus
CG3788-RA 1296 CG3788-RA 77..1210 17..1150 5655 99.9 Plus
CG6330-RA 1541 CG6330-RA 501..677 406..582 345 79.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22932364..22933048 964..280 3410 99.9 Minus
2R 25286936 2R 22933119..22933319 280..80 1005 100 Minus
2R 25286936 2R 22932121..22932306 1150..965 930 100 Minus
3R 32079331 3R 26951118..26951294 582..406 345 79.7 Minus
2R 25286936 2R 22933384..22933447 80..17 320 100 Minus
Blast to na_te.dros performed 2014-11-27 14:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 882..907 1129..1154 112 92.3 Plus

BO16231.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:39 Download gff for BO16231.complete
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 1..1137 17..1154 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:40 Download gff for BO16231.complete
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..1214 17..1155 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:22 Download gff for BO16231.complete
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..1210 17..1152 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:39 Download gff for BO16231.complete
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..1214 17..1155 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:51 Download gff for BO16231.complete
Subject Subject Range Query Range Percent Splice Strand
CG3788-RA 77..1210 17..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:51 Download gff for BO16231.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22932119..22932306 965..1152 98 <- Minus
2R 22932364..22933047 281..964 99 <- Minus
2R 22933119..22933318 81..280 100 <- Minus
2R 22933384..22933447 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:22 Download gff for BO16231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18819642..18819829 965..1152 98 <- Minus
arm_2R 18819887..18820570 281..964 99 <- Minus
arm_2R 18820642..18820841 81..280 100 <- Minus
arm_2R 18820907..18820970 17..80 100   Minus

BO16231.pep Sequence

Translation from 16 to 1168

> BO16231.pep
MSKSNCSDCTCRLANEVGQLKAIVNAQSRTLAKLVRQMKEGCKKDEEAKE
STLCGLNPCLKCLQPDILYHLGLNTETTDFPKVFGDVRFVCMGGTPGRME
NFAYYVMQEIGLKINAATKLRNISEAGQRFSLFKVGPVLCASHGMGCPSI
SILLHELIKMMYHAKCKDPVFIRIGTSGGIGVEPGTVIISSEAIDGRLNP
VHEILVHGVSVQHASQLDESLADEIKMCHDPCKDKYEAVIGRTLCAHDFY
EGQSRLDGAFCEYTPEMKKSYLETLQSQQVKNIEMESLAFAALTSRANIR
GAVVCVAILNRLNGDQIKTPHDVLSKWEKRPQELVARYIRKVLYHNDDDD
ESEQPEDEAEAGAAGGGDTQKAPVEEAEASFLDH

BO16231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3788-PB 378 CG3788-PB 1..378 1..378 1984 100 Plus
CG3788-PA 378 CG3788-PA 1..378 1..378 1984 100 Plus
CG6330-PB 347 CG6330-PB 18..317 46..346 932 57.5 Plus
CG6330-PA 368 CG6330-PA 50..338 57..346 928 59 Plus
CG17224-PD 300 CG17224-PD 9..298 56..343 596 40.4 Plus