Clone Sequence Records
BO16233.3prime Sequence
788 bp (785 high quality bases) assembled on 2006-10-13
> BO16233.3prime
ATGGTCTAGAAAGCTTGCTGACACAAGACCCGGATCCTCGGCCTTCACGT
GGCTCTGCAGGGGATCGTCGTTGTTGTTGTCATCGTCGTGGATGCCCGAG
GAAACCAGCGCCCGGCTTTTCTCGTAGTCGACAAAGTCGTCGAAGAGGCT
GGGCCACGCTTCGGTATCATCGTAATTTTGTATATCACATTGTTCCGTAA
AATTGAGGTACATGTTCCATGTATCCTTCGGTATGCGGCGAATATTCGGG
TGCTTTTCGAGGAAGTGTATCCAGTTGGAGAAGAGATCAGGTGTTTGTAC
AGTGAACACAAGTTTCCACAGGTCAATAGCCATCTCCAGAGAGAGGACGC
GCTGATCGGGCTCCAGACCAAATCGGAATGTAAAGCGGTACAACTGCTTG
AACATCTCGGCGTCCGCCTTGAGCATCTCGATTGTCTGCTCCAGCCGCAC
CCGGATACTGTCTATTGTGTCCGCCCTCATCTTATGCAGACCCTCAATGA
ACTCCACCTTGGTGAAGCGGCACATCTGCGAGGCATCCAGGCACCAGGCC
AAGACGAGAATTGCGAACTCATCGGGCTGATAGTTGAGGTCATTGCACAG
TCGCTCGATGCCGTCCGTGAGTATCATCTCCTCGTCGTCGGGATCTTTGT
ACACATCGAATAGTTTGCTCAGCGTTTGGTGCGATACCTCCATCGATTCC
TGGACAGCAGTTGTTATGATATCGCTCATGGTGGGCGCACTGCCATTAAG
CAAACCTAAAGACTTAAAACTATTACGCTTAGTATCAC
BO16233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-PA | 1005 | CG13322-RA | 233..1002 | 788..19 | 3775 | 99.6 | Minus |
CG13322-PC | 1005 | CG13322-RC | 233..1002 | 788..19 | 3775 | 99.6 | Minus |
CG13322-PB | 1005 | CG13322-RB | 233..1002 | 788..19 | 3775 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-RB | 2053 | CG13322-RB | 763..1532 | 788..19 | 3805 | 99.6 | Minus |
CG13322-RC | 2105 | CG13322-RC | 815..1584 | 788..19 | 3805 | 99.6 | Minus |
CG13322-RA | 2041 | CG13322-RA | 751..1520 | 788..19 | 3805 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12934755..12935114 | 19..378 | 1770 | 99.4 | Plus |
2R | 25286936 | 2R | 12935166..12935500 | 374..708 | 1645 | 99.4 | Plus |
2R | 25286936 | 2R | 12935563..12935643 | 708..788 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:10:35 has no hits.
BO16233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:52 Download gff for
BO16233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-PB | 233..1005 | 18..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:18 Download gff for
BO16233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 751..1520 | 19..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:43 Download gff for
BO16233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 751..1520 | 19..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:43 Download gff for
BO16233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12934755..12935109 | 19..373 | 99 | <- | Plus |
2R | 12935166..12935499 | 374..707 | 99 | <- | Plus |
2R | 12935563..12935643 | 708..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:18 Download gff for
BO16233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8822260..8822614 | 19..373 | 99 | <- | Plus |
arm_2R | 8822671..8823004 | 374..707 | 99 | <- | Plus |
arm_2R | 8823068..8823148 | 708..788 | 100 | | Plus |
BO16233.5prime Sequence
764 bp (698 high quality bases) assembled on 2006-10-13
> BO16233.5prime
GAAGTTATCAGTCGACATGGGCAATTGCCTGAAATGCTTCCAGTCTGCCG
CCGAACAATCGATGCCAACGAACGCCTCGTCCCCCAATTCACACAATTCC
AATTCCAACGCCTGCCAGACGGCCACCAGCCTTGCAAATTGCTACGAATC
GGTGGGCATTAATCCCAATGCCAACGAGCGCTGCGCCTTAGAAACCGATG
AACTGCTCTCTAGCCGAACTCCACTCAAGCCAGCAAAAGCAAACAATTGT
GATACTAAGCGTAATAGTTTTAAGTCTTTAGGTTTGCTTAATGGCAGTGC
GCCCACCATGAGCGATATCATAACAACTGCTGTCCAGGAATCGATGGAGG
TATCGCACCAAACGCTGAGCAAACTATTCGATGTGTACAAAGATCCCGAC
GACGAGGAGATGATACTCACGGACGGCATCGAGCGACTGTGCAATGACCT
CAACTATCAGCCCGATGAGTTCGCAATTCTCGTCTTGGCCTGGTGCCTGG
ATGCCTCGCAGATGTGCCGCTTCACCAAGGTGGAGTTCATTGAGGGTCTG
CATAAGATGAGGGCGGACACAATAGACAGTATCCGGGTGCGGCTGGAGCA
GACAATCGAGATGCTCAAGGCGGACGCCGAGATGTTCAAGCAGTTGTACC
GCTTTACATTCCGATTTGGTCTGGAGCCCGATCAGCGCGTCCTCTCTCTG
GAGATGGCTATTGACCTGTGGAAACTTGTGTTCACTGTACAAACACCTGA
TCTCTTCTCCAACT
BO16233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-PA | 1005 | CG13322-RA | 1..748 | 17..764 | 3690 | 99.7 | Plus |
CG13322-PC | 1005 | CG13322-RC | 1..748 | 17..764 | 3690 | 99.7 | Plus |
CG13322-PB | 1005 | CG13322-RB | 1..748 | 17..764 | 3690 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-RB | 2053 | CG13322-RB | 531..1278 | 17..764 | 3710 | 99.7 | Plus |
CG13322-RC | 2105 | CG13322-RC | 583..1330 | 17..764 | 3710 | 99.7 | Plus |
CG13322-RA | 2041 | CG13322-RA | 519..1266 | 17..764 | 3710 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12935166..12935500 | 663..329 | 1645 | 99.4 | Minus |
2R | 25286936 | 2R | 12935779..12935953 | 191..17 | 875 | 100 | Minus |
2R | 25286936 | 2R | 12935563..12935703 | 329..189 | 705 | 100 | Minus |
2R | 25286936 | 2R | 12935009..12935114 | 764..659 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:16:18 has no hits.
BO16233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:53 Download gff for
BO16233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-PB | 1..748 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:42 Download gff for
BO16233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 519..1266 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:37 Download gff for
BO16233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 519..1266 | 17..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:37 Download gff for
BO16233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12935009..12935109 | 664..764 | 100 | <- | Minus |
2R | 12935166..12935499 | 330..663 | 99 | <- | Minus |
2R | 12935563..12935700 | 192..329 | 100 | <- | Minus |
2R | 12935779..12935953 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:42 Download gff for
BO16233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8822514..8822614 | 664..764 | 100 | <- | Minus |
arm_2R | 8822671..8823004 | 330..663 | 99 | <- | Minus |
arm_2R | 8823068..8823205 | 192..329 | 100 | <- | Minus |
arm_2R | 8823284..8823458 | 17..191 | 100 | | Minus |
BO16233.complete Sequence
1036 bp assembled on 2006-10-11
GenBank Submission: FJ633743
> BO16233.complete
GAAGTTATCAGTCGACATGGGCAATTGCCTGAAATGCTTCCAGTCTGCCG
CCGAACAATCGATGCCAACGAACGCCTCGTCCCCCAATTCACACAATTCC
AATTCCAACGCCTGCCAGACGGCCACCAGCCTTGCAAATTGCTACGAATC
GGTGGGCATTAATCCCAATGCCAACGAGCGCTGCGCCTTAGAAACCGATG
AACTGCTCTCTAGCCGAACTCCACTCAAGCCAGCAAAAGCAAACAATTGT
GATACTAAGCGTAATAGTTTTAAGTCTTTAGGTTTGCTTAATGGCAGTGC
GCCCACCATGAGCGATATCATAACAACTGCTGTCCAGGAATCGATGGAGG
TATCGCACCAAACGCTGAGCAAACTATTCGATGTGTACAAAGATCCCGAC
GACGAGGAGATGATACTCACGGACGGCATCGAGCGACTGTGCAATGACCT
CAACTATCAGCCCGATGAGTTCGCAATTCTCGTCTTGGCCTGGTGCCTGG
ATGCCTCGCAGATGTGCCGCTTCACCAAGGTGGAGTTCATTGAGGGTCTG
CATAAGATGAGGGCGGACACAATAGACAGTATCCGGGTGCGGCTGGAGCA
GACAATCGAGATGCTCAAGGCGGACGCCGAGATGTTCAAGCAGTTGTACC
GCTTTACATTCCGATTTGGTCTGGAGCCCGATCAGCGCGTCCTCTCTCTG
GAGATGGCTATTGACCTGTGGAAACTTGTGTTCACTGTACAAACACCTGA
TCTCTTCTCCAACTGGATACACTTCCTCGAAAAGCACCCGAATATTCGCC
GCATACCGAAGGATACATGGAACATGTACCTCAATTTTACGGAACAATGT
GATATACAAAATTACGATGATACCGAAGCGTGGCCCAGCCTCTTCGACGA
CTTTGTCGACTACGAGAAAAGCCGGGCGCTGGTTTCCTCGGGCATCCACG
ACGATGACAACAACAACGACGATCCCCTGCAGAGCCACGTGAAGGCCGAG
GATCCGGGTCTTGTGTCAGCAAGCTTTCTAGACCAT
BO16233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-RB | 1005 | CG13322-PB | 1..1002 | 17..1018 | 4965 | 99.7 | Plus |
CG13322-RC | 1005 | CG13322-PC | 1..1002 | 17..1018 | 4965 | 99.7 | Plus |
CG13322-RA | 1005 | CG13322-PA | 1..1002 | 17..1018 | 4965 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-RB | 2053 | CG13322-RB | 531..1532 | 17..1018 | 4965 | 99.7 | Plus |
CG13322-RC | 2105 | CG13322-RC | 583..1584 | 17..1018 | 4965 | 99.7 | Plus |
CG13322-RA | 2041 | CG13322-RA | 519..1520 | 17..1018 | 4965 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12934755..12935114 | 1018..659 | 1770 | 99.4 | Minus |
2R | 25286936 | 2R | 12935166..12935500 | 663..329 | 1645 | 99.4 | Minus |
2R | 25286936 | 2R | 12935779..12935953 | 191..17 | 875 | 100 | Minus |
2R | 25286936 | 2R | 12935563..12935703 | 329..189 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:19:51 has no hits.
BO16233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:41 Download gff for
BO16233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RB | 1..1005 | 17..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:54 Download gff for
BO16233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RB | 525..1526 | 17..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:05 Download gff for
BO16233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 519..1520 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:41 Download gff for
BO16233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RB | 525..1526 | 17..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:53 Download gff for
BO16233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13322-RA | 519..1520 | 17..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:53 Download gff for
BO16233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12935779..12935953 | 17..191 | 100 | | Minus |
2R | 12934753..12935109 | 664..1020 | 99 | <- | Minus |
2R | 12935166..12935499 | 330..663 | 99 | <- | Minus |
2R | 12935563..12935700 | 192..329 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:05 Download gff for
BO16233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8822258..8822614 | 664..1020 | 99 | <- | Minus |
arm_2R | 8822671..8823004 | 330..663 | 99 | <- | Minus |
arm_2R | 8823068..8823205 | 192..329 | 100 | <- | Minus |
arm_2R | 8823284..8823458 | 17..191 | 100 | | Minus |
BO16233.pep Sequence
Translation from 16 to 1036
> BO16233.pep
MGNCLKCFQSAAEQSMPTNASSPNSHNSNSNACQTATSLANCYESVGINP
NANERCALETDELLSSRTPLKPAKANNCDTKRNSFKSLGLLNGSAPTMSD
IITTAVQESMEVSHQTLSKLFDVYKDPDDEEMILTDGIERLCNDLNYQPD
EFAILVLAWCLDASQMCRFTKVEFIEGLHKMRADTIDSIRVRLEQTIEML
KADAEMFKQLYRFTFRFGLEPDQRVLSLEMAIDLWKLVFTVQTPDLFSNW
IHFLEKHPNIRRIPKDTWNMYLNFTEQCDIQNYDDTEAWPSLFDDFVDYE
KSRALVSSGIHDDDNNNDDPLQSHVKAEDPGLVSASFLDH
BO16233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13322-PB | 334 | CG13322-PB | 1..334 | 1..334 | 1771 | 100 | Plus |
CG13322-PC | 334 | CG13322-PC | 1..334 | 1..334 | 1771 | 100 | Plus |
CG13322-PA | 334 | CG13322-PA | 1..334 | 1..334 | 1771 | 100 | Plus |
CG7427-PE | 288 | CG7427-PE | 55..242 | 111..299 | 324 | 37.5 | Plus |
CG7427-PA | 288 | CG7427-PA | 55..242 | 111..299 | 324 | 37.5 | Plus |