Clone BO16233 Report

Search the DGRC for BO16233

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG13322-RA
Protein status:BO16233.pep: validated full length
Sequenced Size:1036

Clone Sequence Records

BO16233.3prime Sequence

788 bp (785 high quality bases) assembled on 2006-10-13

> BO16233.3prime
ATGGTCTAGAAAGCTTGCTGACACAAGACCCGGATCCTCGGCCTTCACGT
GGCTCTGCAGGGGATCGTCGTTGTTGTTGTCATCGTCGTGGATGCCCGAG
GAAACCAGCGCCCGGCTTTTCTCGTAGTCGACAAAGTCGTCGAAGAGGCT
GGGCCACGCTTCGGTATCATCGTAATTTTGTATATCACATTGTTCCGTAA
AATTGAGGTACATGTTCCATGTATCCTTCGGTATGCGGCGAATATTCGGG
TGCTTTTCGAGGAAGTGTATCCAGTTGGAGAAGAGATCAGGTGTTTGTAC
AGTGAACACAAGTTTCCACAGGTCAATAGCCATCTCCAGAGAGAGGACGC
GCTGATCGGGCTCCAGACCAAATCGGAATGTAAAGCGGTACAACTGCTTG
AACATCTCGGCGTCCGCCTTGAGCATCTCGATTGTCTGCTCCAGCCGCAC
CCGGATACTGTCTATTGTGTCCGCCCTCATCTTATGCAGACCCTCAATGA
ACTCCACCTTGGTGAAGCGGCACATCTGCGAGGCATCCAGGCACCAGGCC
AAGACGAGAATTGCGAACTCATCGGGCTGATAGTTGAGGTCATTGCACAG
TCGCTCGATGCCGTCCGTGAGTATCATCTCCTCGTCGTCGGGATCTTTGT
ACACATCGAATAGTTTGCTCAGCGTTTGGTGCGATACCTCCATCGATTCC
TGGACAGCAGTTGTTATGATATCGCTCATGGTGGGCGCACTGCCATTAAG
CAAACCTAAAGACTTAAAACTATTACGCTTAGTATCAC

BO16233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-PA 1005 CG13322-RA 233..1002 788..19 3775 99.6 Minus
CG13322-PC 1005 CG13322-RC 233..1002 788..19 3775 99.6 Minus
CG13322-PB 1005 CG13322-RB 233..1002 788..19 3775 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-RB 2053 CG13322-RB 763..1532 788..19 3805 99.6 Minus
CG13322-RC 2105 CG13322-RC 815..1584 788..19 3805 99.6 Minus
CG13322-RA 2041 CG13322-RA 751..1520 788..19 3805 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12934755..12935114 19..378 1770 99.4 Plus
2R 25286936 2R 12935166..12935500 374..708 1645 99.4 Plus
2R 25286936 2R 12935563..12935643 708..788 405 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:10:35 has no hits.

BO16233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:52 Download gff for BO16233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-PB 233..1005 18..788 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:26:18 Download gff for BO16233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 751..1520 19..788 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:43 Download gff for BO16233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 751..1520 19..788 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:43 Download gff for BO16233.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12934755..12935109 19..373 99 <- Plus
2R 12935166..12935499 374..707 99 <- Plus
2R 12935563..12935643 708..788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:26:18 Download gff for BO16233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8822260..8822614 19..373 99 <- Plus
arm_2R 8822671..8823004 374..707 99 <- Plus
arm_2R 8823068..8823148 708..788 100   Plus

BO16233.5prime Sequence

764 bp (698 high quality bases) assembled on 2006-10-13

> BO16233.5prime
GAAGTTATCAGTCGACATGGGCAATTGCCTGAAATGCTTCCAGTCTGCCG
CCGAACAATCGATGCCAACGAACGCCTCGTCCCCCAATTCACACAATTCC
AATTCCAACGCCTGCCAGACGGCCACCAGCCTTGCAAATTGCTACGAATC
GGTGGGCATTAATCCCAATGCCAACGAGCGCTGCGCCTTAGAAACCGATG
AACTGCTCTCTAGCCGAACTCCACTCAAGCCAGCAAAAGCAAACAATTGT
GATACTAAGCGTAATAGTTTTAAGTCTTTAGGTTTGCTTAATGGCAGTGC
GCCCACCATGAGCGATATCATAACAACTGCTGTCCAGGAATCGATGGAGG
TATCGCACCAAACGCTGAGCAAACTATTCGATGTGTACAAAGATCCCGAC
GACGAGGAGATGATACTCACGGACGGCATCGAGCGACTGTGCAATGACCT
CAACTATCAGCCCGATGAGTTCGCAATTCTCGTCTTGGCCTGGTGCCTGG
ATGCCTCGCAGATGTGCCGCTTCACCAAGGTGGAGTTCATTGAGGGTCTG
CATAAGATGAGGGCGGACACAATAGACAGTATCCGGGTGCGGCTGGAGCA
GACAATCGAGATGCTCAAGGCGGACGCCGAGATGTTCAAGCAGTTGTACC
GCTTTACATTCCGATTTGGTCTGGAGCCCGATCAGCGCGTCCTCTCTCTG
GAGATGGCTATTGACCTGTGGAAACTTGTGTTCACTGTACAAACACCTGA
TCTCTTCTCCAACT

BO16233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-PA 1005 CG13322-RA 1..748 17..764 3690 99.7 Plus
CG13322-PC 1005 CG13322-RC 1..748 17..764 3690 99.7 Plus
CG13322-PB 1005 CG13322-RB 1..748 17..764 3690 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-RB 2053 CG13322-RB 531..1278 17..764 3710 99.7 Plus
CG13322-RC 2105 CG13322-RC 583..1330 17..764 3710 99.7 Plus
CG13322-RA 2041 CG13322-RA 519..1266 17..764 3710 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12935166..12935500 663..329 1645 99.4 Minus
2R 25286936 2R 12935779..12935953 191..17 875 100 Minus
2R 25286936 2R 12935563..12935703 329..189 705 100 Minus
2R 25286936 2R 12935009..12935114 764..659 515 99.1 Minus
Blast to na_te.dros performed on 2015-02-12 11:16:18 has no hits.

BO16233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:53 Download gff for BO16233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-PB 1..748 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:42 Download gff for BO16233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 519..1266 17..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:37 Download gff for BO16233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 519..1266 17..764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:37 Download gff for BO16233.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12935009..12935109 664..764 100 <- Minus
2R 12935166..12935499 330..663 99 <- Minus
2R 12935563..12935700 192..329 100 <- Minus
2R 12935779..12935953 17..191 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:42 Download gff for BO16233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8822514..8822614 664..764 100 <- Minus
arm_2R 8822671..8823004 330..663 99 <- Minus
arm_2R 8823068..8823205 192..329 100 <- Minus
arm_2R 8823284..8823458 17..191 100   Minus

BO16233.complete Sequence

1036 bp assembled on 2006-10-11

GenBank Submission: FJ633743

> BO16233.complete
GAAGTTATCAGTCGACATGGGCAATTGCCTGAAATGCTTCCAGTCTGCCG
CCGAACAATCGATGCCAACGAACGCCTCGTCCCCCAATTCACACAATTCC
AATTCCAACGCCTGCCAGACGGCCACCAGCCTTGCAAATTGCTACGAATC
GGTGGGCATTAATCCCAATGCCAACGAGCGCTGCGCCTTAGAAACCGATG
AACTGCTCTCTAGCCGAACTCCACTCAAGCCAGCAAAAGCAAACAATTGT
GATACTAAGCGTAATAGTTTTAAGTCTTTAGGTTTGCTTAATGGCAGTGC
GCCCACCATGAGCGATATCATAACAACTGCTGTCCAGGAATCGATGGAGG
TATCGCACCAAACGCTGAGCAAACTATTCGATGTGTACAAAGATCCCGAC
GACGAGGAGATGATACTCACGGACGGCATCGAGCGACTGTGCAATGACCT
CAACTATCAGCCCGATGAGTTCGCAATTCTCGTCTTGGCCTGGTGCCTGG
ATGCCTCGCAGATGTGCCGCTTCACCAAGGTGGAGTTCATTGAGGGTCTG
CATAAGATGAGGGCGGACACAATAGACAGTATCCGGGTGCGGCTGGAGCA
GACAATCGAGATGCTCAAGGCGGACGCCGAGATGTTCAAGCAGTTGTACC
GCTTTACATTCCGATTTGGTCTGGAGCCCGATCAGCGCGTCCTCTCTCTG
GAGATGGCTATTGACCTGTGGAAACTTGTGTTCACTGTACAAACACCTGA
TCTCTTCTCCAACTGGATACACTTCCTCGAAAAGCACCCGAATATTCGCC
GCATACCGAAGGATACATGGAACATGTACCTCAATTTTACGGAACAATGT
GATATACAAAATTACGATGATACCGAAGCGTGGCCCAGCCTCTTCGACGA
CTTTGTCGACTACGAGAAAAGCCGGGCGCTGGTTTCCTCGGGCATCCACG
ACGATGACAACAACAACGACGATCCCCTGCAGAGCCACGTGAAGGCCGAG
GATCCGGGTCTTGTGTCAGCAAGCTTTCTAGACCAT

BO16233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-RB 1005 CG13322-PB 1..1002 17..1018 4965 99.7 Plus
CG13322-RC 1005 CG13322-PC 1..1002 17..1018 4965 99.7 Plus
CG13322-RA 1005 CG13322-PA 1..1002 17..1018 4965 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-RB 2053 CG13322-RB 531..1532 17..1018 4965 99.7 Plus
CG13322-RC 2105 CG13322-RC 583..1584 17..1018 4965 99.7 Plus
CG13322-RA 2041 CG13322-RA 519..1520 17..1018 4965 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12934755..12935114 1018..659 1770 99.4 Minus
2R 25286936 2R 12935166..12935500 663..329 1645 99.4 Minus
2R 25286936 2R 12935779..12935953 191..17 875 100 Minus
2R 25286936 2R 12935563..12935703 329..189 705 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:19:51 has no hits.

BO16233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:41 Download gff for BO16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 1..1005 17..1019 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:54 Download gff for BO16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 525..1526 17..1018 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:05 Download gff for BO16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 519..1520 17..1020 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:41 Download gff for BO16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RB 525..1526 17..1018 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:53 Download gff for BO16233.complete
Subject Subject Range Query Range Percent Splice Strand
CG13322-RA 519..1520 17..1020 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:53 Download gff for BO16233.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12935779..12935953 17..191 100   Minus
2R 12934753..12935109 664..1020 99 <- Minus
2R 12935166..12935499 330..663 99 <- Minus
2R 12935563..12935700 192..329 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:05 Download gff for BO16233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8822258..8822614 664..1020 99 <- Minus
arm_2R 8822671..8823004 330..663 99 <- Minus
arm_2R 8823068..8823205 192..329 100 <- Minus
arm_2R 8823284..8823458 17..191 100   Minus

BO16233.pep Sequence

Translation from 16 to 1036

> BO16233.pep
MGNCLKCFQSAAEQSMPTNASSPNSHNSNSNACQTATSLANCYESVGINP
NANERCALETDELLSSRTPLKPAKANNCDTKRNSFKSLGLLNGSAPTMSD
IITTAVQESMEVSHQTLSKLFDVYKDPDDEEMILTDGIERLCNDLNYQPD
EFAILVLAWCLDASQMCRFTKVEFIEGLHKMRADTIDSIRVRLEQTIEML
KADAEMFKQLYRFTFRFGLEPDQRVLSLEMAIDLWKLVFTVQTPDLFSNW
IHFLEKHPNIRRIPKDTWNMYLNFTEQCDIQNYDDTEAWPSLFDDFVDYE
KSRALVSSGIHDDDNNNDDPLQSHVKAEDPGLVSASFLDH

BO16233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13322-PB 334 CG13322-PB 1..334 1..334 1771 100 Plus
CG13322-PC 334 CG13322-PC 1..334 1..334 1771 100 Plus
CG13322-PA 334 CG13322-PA 1..334 1..334 1771 100 Plus
CG7427-PE 288 CG7427-PE 55..242 111..299 324 37.5 Plus
CG7427-PA 288 CG7427-PA 55..242 111..299 324 37.5 Plus