Clone BO16234 Report

Search the DGRC for BO16234

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG32588-RA
Protein status:BO16234.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO16234.3prime Sequence

542 bp (542 high quality bases) assembled on 2006-10-13

> BO16234.3prime
ATGGTCTAGAAAGCTTGCATGAAAGATCAAATACTTGAGCAGCCATTGCC
CGGCAACAACACAGCACAAGCTGATCAATATTTCCCATAGGGGGGGCACA
CTGCGCTCCAGAGGCATCAATCCACGTCGCTTCATATCTAATTTAATGAC
ATACACATCGATGGTCATGATGATGGCAAAAAGCGGAACGAAGATATTAT
TCTTATGCGGAGTGATAAATACAATGGAGTATATCATTAGCATGTACGCT
CTCACCAGTAAAAAGTGTGTGAGCGCTCGAAAGCGCCGCGAATTGAAGTC
CTTTAAAATCAAAAGATTGCTTGGCCATCCGAAGAAAACGATCATGAAAT
CTATAAAATTTATTAACAATCGAAGGACACCGATGTTGAGGGTATAAAAG
AATACCAATAAATCGATACTTTTCGAGATTTTCCAGTTGATGCGCCTTTC
GCAACATGATAGAGGTATCTTGAGATTGGTGTGCACAACGCGGCAAAAGT
GATCACTGATCTGCTCGAAGAATGTCATGTCGACTGATAACT

BO16234.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-PA 513 CG32588-RA 1..510 528..19 2525 99.8 Minus
CG33252-PA 525 CG33252-RA 7..53 522..476 160 93.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-RA 677 CG32588-RA 77..591 533..19 2545 99.6 Minus
CG43075-RA 757 CG43075-RA 78..473 529..149 565 76.8 Minus
CG33252-RA 819 CG33252-RA 100..432 522..205 445 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15205893..15206090 19..216 990 100 Plus
X 23542271 X 15206394..15206560 367..533 820 99.4 Plus
X 23542271 X 15206169..15206319 217..367 740 99.3 Plus
X 23542271 X 15220940..15221099 370..529 425 84.4 Plus
X 23542271 X 16896936..16897088 370..522 300 79.7 Plus
Blast to na_te.dros performed on 2015-02-10 21:38:35 has no hits.

BO16234.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:54 Download gff for BO16234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-PA 1..513 18..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:14 Download gff for BO16234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..595 13..539 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:53 Download gff for BO16234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..595 13..539 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:53 Download gff for BO16234.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15205889..15206090 13..216 98 <- Plus
X 15206169..15206318 217..366 99 <- Plus
X 15206394..15206566 367..539 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:14 Download gff for BO16234.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15099922..15100123 13..216 98 <- Plus
arm_X 15100202..15100351 217..366 99 <- Plus
arm_X 15100427..15100599 367..539 97   Plus

BO16234.5prime Sequence

542 bp (542 high quality bases) assembled on 2006-10-13

> BO16234.5prime
GAAGTTATCAGTCGACATGACATTCTTCGAGCAGATCAGTGATCACTTTT
GCCGCGTTGTGCACACCAATCTCAAGATACCTCTATCATGTTGCGAAAGG
CGCATCAACTGGAAAATCTCGAAAAGTATCGATTTATTGGTATTCTTTTA
TACCCTCAACATCGGTGTCCTTCGATTGTTAATAAATTTTATAGATTTCA
TGATCGTTTTCTTCGGATGGCCAAGCAATCTTTTGATTTTAAAGGACTTC
AATTCGCGGCGCTTTCGAGCGCTCACACACTTTTTACTGGTGAGAGCGTA
CATGCTAATGATATACTCCATTGTATTTATCACTCCGCATAAGAATAATA
TCTTCGTTCCGCTTTTTGCCATCATCATGACCATCGATGTGTATGTCATT
AAATTAGATATGAAGCGACGTGGATTGATGCCTCTGGAGCGCAGTGTGCC
CCCCCTATGGGAAATATTGATCAGCTTGTGCTGTGTTGTTGCCGGGCAAT
GGCTGCTCAAGTATTTGATCTTTCATGCAAGCTTTCTAGACC

BO16234.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-PA 513 CG32588-RA 1..510 17..526 2525 99.8 Plus
CG33252-PA 525 CG33252-RA 7..53 23..69 160 93.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-RA 677 CG32588-RA 77..591 12..526 2545 99.6 Plus
CG43075-RA 757 CG43075-RA 78..473 16..396 565 76.8 Plus
CG33252-RA 819 CG33252-RA 100..432 23..340 445 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15205893..15206090 526..329 990 100 Minus
X 23542271 X 15206394..15206560 178..12 820 99.4 Minus
X 23542271 X 15206169..15206319 328..178 740 99.3 Minus
X 23542271 X 15220940..15221099 175..16 425 84.4 Minus
X 23542271 X 16896936..16897088 175..23 300 79.7 Minus
Blast to na_te.dros performed on 2015-02-10 16:30:21 has no hits.

BO16234.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:54 Download gff for BO16234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-PA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:20 Download gff for BO16234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..595 6..532 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:35 Download gff for BO16234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..595 6..532 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:35 Download gff for BO16234.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15206169..15206318 179..328 99 <- Minus
X 15206394..15206566 6..178 97   Minus
X 15205889..15206090 329..532 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:20 Download gff for BO16234.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15099922..15100123 329..532 98 <- Minus
arm_X 15100202..15100351 179..328 99 <- Minus
arm_X 15100427..15100599 6..178 97   Minus

BO16234.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ633744

> BO16234.complete
GAAGTTATCAGTCGACATGACATTCTTCGAGCAGATCAGTGATCACTTTT
GCCGCGTTGTGCACACCAATCTCAAGATACCTCTATCATGTTGCGAAAGG
CGCATCAACTGGAAAATCTCGAAAAGTATCGATTTATTGGTATTCTTTTA
TACCCTCAACATCGGTGTCCTTCGATTGTTAATAAATTTTATAGATTTCA
TGATCGTTTTCTTCGGATGGCCAAGCAATCTTTTGATTTTAAAGGACTTC
AATTCGCGGCGCTTTCGAGCGCTCACACACTTTTTACTGGTGAGAGCGTA
CATGCTAATGATATACTCCATTGTATTTATCACTCCGCATAAGAATAATA
TCTTCGTTCCGCTTTTTGCCATCATCATGACCATCGATGTGTATGTCATT
AAATTAGATATGAAGCGACGTGGATTGATGCCTCTGGAGCGCAGTGTGCC
CCCCCTATGGGAAATATTGATCAGCTTGTGCTGTGTTGTTGCCGGGCAAT
GGCTGCTCAAGTATTTGATCTTTCATGCAAGCTTTCTAGACCAT

BO16234.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-RA 513 CG32588-PA 1..510 17..526 2535 99.8 Plus
CG43075-RA 525 CG43075-PA 1..395 17..396 500 75.7 Plus
CG33252-RA 525 CG33252-PA 7..339 23..340 415 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-RA 677 CG32588-RA 77..591 12..526 2545 99.6 Plus
CG43075-RA 757 CG43075-RA 78..473 16..396 505 75.8 Plus
CG33252-RA 819 CG33252-RA 100..432 23..340 415 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15205893..15206090 526..329 990 100 Minus
X 23542271 X 15206394..15206560 178..12 820 99.4 Minus
X 23542271 X 15206169..15206319 328..178 740 99.3 Minus
X 23542271 X 15220940..15221099 175..16 425 84.4 Minus
X 23542271 X 16896936..16897088 175..23 300 79.7 Minus
Blast to na_te.dros performed on 2014-11-27 07:53:15 has no hits.

BO16234.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:43 Download gff for BO16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:56 Download gff for BO16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..595 6..532 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:29 Download gff for BO16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 82..591 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:44 Download gff for BO16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 71..595 6..532 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:41 Download gff for BO16234.complete
Subject Subject Range Query Range Percent Splice Strand
CG32588-RA 82..591 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:41 Download gff for BO16234.complete
Subject Subject Range Query Range Percent Splice Strand
X 15205889..15206090 329..528 99 <- Minus
X 15206169..15206318 179..328 99 <- Minus
X 15206394..15206555 17..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:29 Download gff for BO16234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15099922..15100123 329..528 99 <- Minus
arm_X 15100202..15100351 179..328 99 <- Minus
arm_X 15100427..15100588 17..178 100   Minus

BO16234.pep Sequence

Translation from 16 to 544

> BO16234.pep
MTFFEQISDHFCRVVHTNLKIPLSCCERRINWKISKSIDLLVFFYTLNIG
VLRLLINFIDFMIVFFGWPSNLLILKDFNSRRFRALTHFLLVRAYMLMIY
SIVFITPHKNNIFVPLFAIIMTIDVYVIKLDMKRRGLMPLERSVPPLWEI
LISLCCVVAGQWLLKYLIFHASFLDH

BO16234.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG32588-PA 170 CG32588-PA 1..170 1..170 895 100 Plus
CG43075-PA 174 CG43075-PA 1..172 1..168 496 56.1 Plus
CG33252-PA 174 CG33252-PA 1..173 1..169 420 52.3 Plus