Clone Sequence Records
BO16234.3prime Sequence
542 bp (542 high quality bases) assembled on 2006-10-13
> BO16234.3prime
ATGGTCTAGAAAGCTTGCATGAAAGATCAAATACTTGAGCAGCCATTGCC
CGGCAACAACACAGCACAAGCTGATCAATATTTCCCATAGGGGGGGCACA
CTGCGCTCCAGAGGCATCAATCCACGTCGCTTCATATCTAATTTAATGAC
ATACACATCGATGGTCATGATGATGGCAAAAAGCGGAACGAAGATATTAT
TCTTATGCGGAGTGATAAATACAATGGAGTATATCATTAGCATGTACGCT
CTCACCAGTAAAAAGTGTGTGAGCGCTCGAAAGCGCCGCGAATTGAAGTC
CTTTAAAATCAAAAGATTGCTTGGCCATCCGAAGAAAACGATCATGAAAT
CTATAAAATTTATTAACAATCGAAGGACACCGATGTTGAGGGTATAAAAG
AATACCAATAAATCGATACTTTTCGAGATTTTCCAGTTGATGCGCCTTTC
GCAACATGATAGAGGTATCTTGAGATTGGTGTGCACAACGCGGCAAAAGT
GATCACTGATCTGCTCGAAGAATGTCATGTCGACTGATAACT
BO16234.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-PA | 513 | CG32588-RA | 1..510 | 528..19 | 2525 | 99.8 | Minus |
CG33252-PA | 525 | CG33252-RA | 7..53 | 522..476 | 160 | 93.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-RA | 677 | CG32588-RA | 77..591 | 533..19 | 2545 | 99.6 | Minus |
CG43075-RA | 757 | CG43075-RA | 78..473 | 529..149 | 565 | 76.8 | Minus |
CG33252-RA | 819 | CG33252-RA | 100..432 | 522..205 | 445 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15205893..15206090 | 19..216 | 990 | 100 | Plus |
X | 23542271 | X | 15206394..15206560 | 367..533 | 820 | 99.4 | Plus |
X | 23542271 | X | 15206169..15206319 | 217..367 | 740 | 99.3 | Plus |
X | 23542271 | X | 15220940..15221099 | 370..529 | 425 | 84.4 | Plus |
X | 23542271 | X | 16896936..16897088 | 370..522 | 300 | 79.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:38:35 has no hits.
BO16234.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:54 Download gff for
BO16234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-PA | 1..513 | 18..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:14 Download gff for
BO16234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..595 | 13..539 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:53 Download gff for
BO16234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..595 | 13..539 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:53 Download gff for
BO16234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15205889..15206090 | 13..216 | 98 | <- | Plus |
X | 15206169..15206318 | 217..366 | 99 | <- | Plus |
X | 15206394..15206566 | 367..539 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:14 Download gff for
BO16234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15099922..15100123 | 13..216 | 98 | <- | Plus |
arm_X | 15100202..15100351 | 217..366 | 99 | <- | Plus |
arm_X | 15100427..15100599 | 367..539 | 97 | | Plus |
BO16234.5prime Sequence
542 bp (542 high quality bases) assembled on 2006-10-13
> BO16234.5prime
GAAGTTATCAGTCGACATGACATTCTTCGAGCAGATCAGTGATCACTTTT
GCCGCGTTGTGCACACCAATCTCAAGATACCTCTATCATGTTGCGAAAGG
CGCATCAACTGGAAAATCTCGAAAAGTATCGATTTATTGGTATTCTTTTA
TACCCTCAACATCGGTGTCCTTCGATTGTTAATAAATTTTATAGATTTCA
TGATCGTTTTCTTCGGATGGCCAAGCAATCTTTTGATTTTAAAGGACTTC
AATTCGCGGCGCTTTCGAGCGCTCACACACTTTTTACTGGTGAGAGCGTA
CATGCTAATGATATACTCCATTGTATTTATCACTCCGCATAAGAATAATA
TCTTCGTTCCGCTTTTTGCCATCATCATGACCATCGATGTGTATGTCATT
AAATTAGATATGAAGCGACGTGGATTGATGCCTCTGGAGCGCAGTGTGCC
CCCCCTATGGGAAATATTGATCAGCTTGTGCTGTGTTGTTGCCGGGCAAT
GGCTGCTCAAGTATTTGATCTTTCATGCAAGCTTTCTAGACC
BO16234.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-PA | 513 | CG32588-RA | 1..510 | 17..526 | 2525 | 99.8 | Plus |
CG33252-PA | 525 | CG33252-RA | 7..53 | 23..69 | 160 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-RA | 677 | CG32588-RA | 77..591 | 12..526 | 2545 | 99.6 | Plus |
CG43075-RA | 757 | CG43075-RA | 78..473 | 16..396 | 565 | 76.8 | Plus |
CG33252-RA | 819 | CG33252-RA | 100..432 | 23..340 | 445 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15205893..15206090 | 526..329 | 990 | 100 | Minus |
X | 23542271 | X | 15206394..15206560 | 178..12 | 820 | 99.4 | Minus |
X | 23542271 | X | 15206169..15206319 | 328..178 | 740 | 99.3 | Minus |
X | 23542271 | X | 15220940..15221099 | 175..16 | 425 | 84.4 | Minus |
X | 23542271 | X | 16896936..16897088 | 175..23 | 300 | 79.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:30:21 has no hits.
BO16234.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:54 Download gff for
BO16234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-PA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:20 Download gff for
BO16234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..595 | 6..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:35 Download gff for
BO16234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..595 | 6..532 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:35 Download gff for
BO16234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15206169..15206318 | 179..328 | 99 | <- | Minus |
X | 15206394..15206566 | 6..178 | 97 | | Minus |
X | 15205889..15206090 | 329..532 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:20 Download gff for
BO16234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15099922..15100123 | 329..532 | 98 | <- | Minus |
arm_X | 15100202..15100351 | 179..328 | 99 | <- | Minus |
arm_X | 15100427..15100599 | 6..178 | 97 | | Minus |
BO16234.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ633744
> BO16234.complete
GAAGTTATCAGTCGACATGACATTCTTCGAGCAGATCAGTGATCACTTTT
GCCGCGTTGTGCACACCAATCTCAAGATACCTCTATCATGTTGCGAAAGG
CGCATCAACTGGAAAATCTCGAAAAGTATCGATTTATTGGTATTCTTTTA
TACCCTCAACATCGGTGTCCTTCGATTGTTAATAAATTTTATAGATTTCA
TGATCGTTTTCTTCGGATGGCCAAGCAATCTTTTGATTTTAAAGGACTTC
AATTCGCGGCGCTTTCGAGCGCTCACACACTTTTTACTGGTGAGAGCGTA
CATGCTAATGATATACTCCATTGTATTTATCACTCCGCATAAGAATAATA
TCTTCGTTCCGCTTTTTGCCATCATCATGACCATCGATGTGTATGTCATT
AAATTAGATATGAAGCGACGTGGATTGATGCCTCTGGAGCGCAGTGTGCC
CCCCCTATGGGAAATATTGATCAGCTTGTGCTGTGTTGTTGCCGGGCAAT
GGCTGCTCAAGTATTTGATCTTTCATGCAAGCTTTCTAGACCAT
BO16234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-RA | 513 | CG32588-PA | 1..510 | 17..526 | 2535 | 99.8 | Plus |
CG43075-RA | 525 | CG43075-PA | 1..395 | 17..396 | 500 | 75.7 | Plus |
CG33252-RA | 525 | CG33252-PA | 7..339 | 23..340 | 415 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-RA | 677 | CG32588-RA | 77..591 | 12..526 | 2545 | 99.6 | Plus |
CG43075-RA | 757 | CG43075-RA | 78..473 | 16..396 | 505 | 75.8 | Plus |
CG33252-RA | 819 | CG33252-RA | 100..432 | 23..340 | 415 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15205893..15206090 | 526..329 | 990 | 100 | Minus |
X | 23542271 | X | 15206394..15206560 | 178..12 | 820 | 99.4 | Minus |
X | 23542271 | X | 15206169..15206319 | 328..178 | 740 | 99.3 | Minus |
X | 23542271 | X | 15220940..15221099 | 175..16 | 425 | 84.4 | Minus |
X | 23542271 | X | 16896936..16897088 | 175..23 | 300 | 79.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:53:15 has no hits.
BO16234.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:43 Download gff for
BO16234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:56 Download gff for
BO16234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..595 | 6..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:29 Download gff for
BO16234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 82..591 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:44 Download gff for
BO16234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 71..595 | 6..532 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:41 Download gff for
BO16234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32588-RA | 82..591 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:41 Download gff for
BO16234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15205889..15206090 | 329..528 | 99 | <- | Minus |
X | 15206169..15206318 | 179..328 | 99 | <- | Minus |
X | 15206394..15206555 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:29 Download gff for
BO16234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15099922..15100123 | 329..528 | 99 | <- | Minus |
arm_X | 15100202..15100351 | 179..328 | 99 | <- | Minus |
arm_X | 15100427..15100588 | 17..178 | 100 | | Minus |
BO16234.pep Sequence
Translation from 16 to 544
> BO16234.pep
MTFFEQISDHFCRVVHTNLKIPLSCCERRINWKISKSIDLLVFFYTLNIG
VLRLLINFIDFMIVFFGWPSNLLILKDFNSRRFRALTHFLLVRAYMLMIY
SIVFITPHKNNIFVPLFAIIMTIDVYVIKLDMKRRGLMPLERSVPPLWEI
LISLCCVVAGQWLLKYLIFHASFLDH
BO16234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32588-PA | 170 | CG32588-PA | 1..170 | 1..170 | 895 | 100 | Plus |
CG43075-PA | 174 | CG43075-PA | 1..172 | 1..168 | 496 | 56.1 | Plus |
CG33252-PA | 174 | CG33252-PA | 1..173 | 1..169 | 420 | 52.3 | Plus |