Clone Sequence Records
BO16235.5prime Sequence
392 bp (392 high quality bases) assembled on 2006-10-13
> BO16235.5prime
GAAGTTATCAGTCGACATGTGCTTCATGATGATAGGATGCAAGTACATTG
CCAACGCCAATCCGAAGCGGTTCGCAAAGATCGTACATCCCAGCGCAGTG
GGATTCGTTCTAGTGGGAACGGTATTATTTTTTTCGGTGGAAATGTTCTA
TATGTTGCCCAGGATATACGACACCGATGGACTGTTCTTCAAGATCGCCT
GGCTTATGGCACTATTTATTGTCTACAATCTGCTAGGAAATATGCTAGCC
TGCCATCGCAACTCCTCGGCGGTGACTTCCTTGCCCAAGGATCGCCAGAT
TCCGTGCCCAGAGGAGAAGCACCTGTGGCACTTCTGTGACCACTGCCAGA
TGTTAGTGCCGGTAAAGTATTTGCCAGCAAGCTTTCTAGACC
BO16235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-PB | 363 | CG13029-RB | 1..360 | 17..376 | 1800 | 100 | Plus |
CG13029-PC | 867 | CG13029-RC | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-RC | 1047 | CG13029-RC | 75..420 | 16..361 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16860696..16861056 | 16..376 | 1805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:39:15 has no hits.
BO16235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:56 Download gff for
BO16235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-PB | 1..363 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:18 Download gff for
BO16235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 75..420 | 16..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:00 Download gff for
BO16235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 75..420 | 16..361 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:00 Download gff for
BO16235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16860696..16861056 | 16..376 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:18 Download gff for
BO16235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16853796..16854156 | 16..376 | 100 | | Plus |
BO16235.3prime Sequence
392 bp (392 high quality bases) assembled on 2006-10-13
> BO16235.3prime
ATGGTCTAGAAAGCTTGCTGGCAAATACTTTACCGGCACTAACATCTGGC
AGTGGTCACAGAAGTGCCACAGGTGCTTCTCCTCTGGGCACGGAATCTGG
CGATCCTTGGGCAAGGAAGTCACCGCCGAGGAGTTGCGATGGCAGGCTAG
CATATTTCCTAGCAGATTGTAGACAATAAATAGTGCCATAAGCCAGGCGA
TCTTGAAGAACAGTCCATCGGTGTCGTATATCCTGGGCAACATATAGAAC
ATTTCCACCGAAAAAAATAATACCGTTCCCACTAGAACGAATCCCACTGC
GCTGGGATGTACGATCTTTGCGAACCGCTTCGGATTGGCGTTGGCAATGT
ACTTGCATCCTATCATCATGAAGCACATGTCGACTGATAACT
BO16235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-PB | 363 | CG13029-RB | 1..360 | 378..19 | 1800 | 100 | Minus |
CG13029-PC | 867 | CG13029-RC | 1..345 | 378..34 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-RC | 1047 | CG13029-RC | 75..420 | 379..34 | 1730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16860696..16861056 | 379..19 | 1805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:04:51 has no hits.
BO16235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:55 Download gff for
BO16235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-PB | 1..363 | 18..378 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:50 Download gff for
BO16235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 75..420 | 34..379 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:56 Download gff for
BO16235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 75..420 | 34..379 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:56 Download gff for
BO16235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16860696..16861056 | 19..379 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:50 Download gff for
BO16235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16853796..16854156 | 19..379 | 100 | | Minus |
BO16235.complete Sequence
394 bp assembled on 2006-10-11
GenBank Submission: FJ633745
> BO16235.complete
GAAGTTATCAGTCGACATGTGCTTCATGATGATAGGATGCAAGTACATTG
CCAACGCCAATCCGAAGCGGTTCGCAAAGATCGTACATCCCAGCGCAGTG
GGATTCGTTCTAGTGGGAACGGTATTATTTTTTTCGGTGGAAATGTTCTA
TATGTTGCCCAGGATATACGACACCGATGGACTGTTCTTCAAGATCGCCT
GGCTTATGGCACTATTTATTGTCTACAATCTGCTAGGAAATATGCTAGCC
TGCCATCGCAACTCCTCGGCGGTGACTTCCTTGCCCAAGGATCGCCAGAT
TCCGTGCCCAGAGGAGAAGCACCTGTGGCACTTCTGTGACCACTGCCAGA
TGTTAGTGCCGGTAAAGTATTTGCCAGCAAGCTTTCTAGACCAT
BO16235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-RC | 867 | CG13029-PC | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-RC | 1047 | CG13029-RC | 75..420 | 16..361 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16860696..16861056 | 16..376 | 1805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:46 has no hits.
BO16235.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:17 Download gff for
BO16235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RB | 1..363 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:30 Download gff for
BO16235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RB | 75..435 | 16..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:18 Download gff for
BO16235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 76..420 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:18 Download gff for
BO16235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RB | 75..435 | 16..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:16 Download gff for
BO16235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13029-RC | 76..420 | 17..361 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:16 Download gff for
BO16235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16860697..16861056 | 17..378 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:18 Download gff for
BO16235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16853797..16854156 | 17..378 | 99 | | Plus |
BO16235.pep Sequence
Translation from 16 to 394
> BO16235.pep
MCFMMIGCKYIANANPKRFAKIVHPSAVGFVLVGTVLFFSVEMFYMLPRI
YDTDGLFFKIAWLMALFIVYNLLGNMLACHRNSSAVTSLPKDRQIPCPEE
KHLWHFCDHCQMLVPVKYLPASFLDH
BO16235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13029-PC | 288 | CG13029-PC | 1..115 | 1..115 | 631 | 100 | Plus |
CG17197-PB | 290 | CG17197-PB | 1..115 | 1..115 | 372 | 53.9 | Plus |
CG17196-PA | 276 | CG17196-PA | 1..113 | 1..115 | 312 | 49.6 | Plus |
CG17195-PA | 283 | CG17195-PA | 1..111 | 1..113 | 303 | 45.1 | Plus |
CG17196-PC | 253 | CG17196-PC | 1..90 | 1..115 | 224 | 40 | Plus |