Clone BO16235 Report

Search the DGRC for BO16235

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG13029-RB
Protein status:BO16235.pep: validated full length
Sequenced Size:394

Clone Sequence Records

BO16235.5prime Sequence

392 bp (392 high quality bases) assembled on 2006-10-13

> BO16235.5prime
GAAGTTATCAGTCGACATGTGCTTCATGATGATAGGATGCAAGTACATTG
CCAACGCCAATCCGAAGCGGTTCGCAAAGATCGTACATCCCAGCGCAGTG
GGATTCGTTCTAGTGGGAACGGTATTATTTTTTTCGGTGGAAATGTTCTA
TATGTTGCCCAGGATATACGACACCGATGGACTGTTCTTCAAGATCGCCT
GGCTTATGGCACTATTTATTGTCTACAATCTGCTAGGAAATATGCTAGCC
TGCCATCGCAACTCCTCGGCGGTGACTTCCTTGCCCAAGGATCGCCAGAT
TCCGTGCCCAGAGGAGAAGCACCTGTGGCACTTCTGTGACCACTGCCAGA
TGTTAGTGCCGGTAAAGTATTTGCCAGCAAGCTTTCTAGACC

BO16235.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-PB 363 CG13029-RB 1..360 17..376 1800 100 Plus
CG13029-PC 867 CG13029-RC 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-RC 1047 CG13029-RC 75..420 16..361 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16860696..16861056 16..376 1805 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:39:15 has no hits.

BO16235.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:56 Download gff for BO16235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-PB 1..363 17..377 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:18 Download gff for BO16235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 75..420 16..361 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:00 Download gff for BO16235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 75..420 16..361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:00 Download gff for BO16235.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16860696..16861056 16..376 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:18 Download gff for BO16235.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16853796..16854156 16..376 100   Plus

BO16235.3prime Sequence

392 bp (392 high quality bases) assembled on 2006-10-13

> BO16235.3prime
ATGGTCTAGAAAGCTTGCTGGCAAATACTTTACCGGCACTAACATCTGGC
AGTGGTCACAGAAGTGCCACAGGTGCTTCTCCTCTGGGCACGGAATCTGG
CGATCCTTGGGCAAGGAAGTCACCGCCGAGGAGTTGCGATGGCAGGCTAG
CATATTTCCTAGCAGATTGTAGACAATAAATAGTGCCATAAGCCAGGCGA
TCTTGAAGAACAGTCCATCGGTGTCGTATATCCTGGGCAACATATAGAAC
ATTTCCACCGAAAAAAATAATACCGTTCCCACTAGAACGAATCCCACTGC
GCTGGGATGTACGATCTTTGCGAACCGCTTCGGATTGGCGTTGGCAATGT
ACTTGCATCCTATCATCATGAAGCACATGTCGACTGATAACT

BO16235.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-PB 363 CG13029-RB 1..360 378..19 1800 100 Minus
CG13029-PC 867 CG13029-RC 1..345 378..34 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-RC 1047 CG13029-RC 75..420 379..34 1730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16860696..16861056 379..19 1805 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:04:51 has no hits.

BO16235.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:55 Download gff for BO16235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-PB 1..363 18..378 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:22:50 Download gff for BO16235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 75..420 34..379 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:56 Download gff for BO16235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 75..420 34..379 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:56 Download gff for BO16235.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16860696..16861056 19..379 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:22:50 Download gff for BO16235.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16853796..16854156 19..379 100   Minus

BO16235.complete Sequence

394 bp assembled on 2006-10-11

GenBank Submission: FJ633745

> BO16235.complete
GAAGTTATCAGTCGACATGTGCTTCATGATGATAGGATGCAAGTACATTG
CCAACGCCAATCCGAAGCGGTTCGCAAAGATCGTACATCCCAGCGCAGTG
GGATTCGTTCTAGTGGGAACGGTATTATTTTTTTCGGTGGAAATGTTCTA
TATGTTGCCCAGGATATACGACACCGATGGACTGTTCTTCAAGATCGCCT
GGCTTATGGCACTATTTATTGTCTACAATCTGCTAGGAAATATGCTAGCC
TGCCATCGCAACTCCTCGGCGGTGACTTCCTTGCCCAAGGATCGCCAGAT
TCCGTGCCCAGAGGAGAAGCACCTGTGGCACTTCTGTGACCACTGCCAGA
TGTTAGTGCCGGTAAAGTATTTGCCAGCAAGCTTTCTAGACCAT

BO16235.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-RC 867 CG13029-PC 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-RC 1047 CG13029-RC 75..420 16..361 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16860696..16861056 16..376 1805 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:38:46 has no hits.

BO16235.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:17 Download gff for BO16235.complete
Subject Subject Range Query Range Percent Splice Strand
CG13029-RB 1..363 17..377 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:30 Download gff for BO16235.complete
Subject Subject Range Query Range Percent Splice Strand
CG13029-RB 75..435 16..376 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:18 Download gff for BO16235.complete
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 76..420 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:18 Download gff for BO16235.complete
Subject Subject Range Query Range Percent Splice Strand
CG13029-RB 75..435 16..376 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:16 Download gff for BO16235.complete
Subject Subject Range Query Range Percent Splice Strand
CG13029-RC 76..420 17..361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:16 Download gff for BO16235.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16860697..16861056 17..378 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:18 Download gff for BO16235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16853797..16854156 17..378 99   Plus

BO16235.pep Sequence

Translation from 16 to 394

> BO16235.pep
MCFMMIGCKYIANANPKRFAKIVHPSAVGFVLVGTVLFFSVEMFYMLPRI
YDTDGLFFKIAWLMALFIVYNLLGNMLACHRNSSAVTSLPKDRQIPCPEE
KHLWHFCDHCQMLVPVKYLPASFLDH

BO16235.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13029-PC 288 CG13029-PC 1..115 1..115 631 100 Plus
CG17197-PB 290 CG17197-PB 1..115 1..115 372 53.9 Plus
CG17196-PA 276 CG17196-PA 1..113 1..115 312 49.6 Plus
CG17195-PA 283 CG17195-PA 1..111 1..113 303 45.1 Plus
CG17196-PC 253 CG17196-PC 1..90 1..115 224 40 Plus