Clone BO16237 Report

Search the DGRC for BO16237

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptMESK2-RC
Protein status:BO16237.pep: validated full length
Sequenced Size:1345

Clone Sequence Records

BO16237.3prime Sequence

547 bp (439 high quality bases) assembled on 2006-10-13

> BO16237.3prime
ATGGTCTAGAAAGCTTGCGATGAAGCTGCTCAACTGAGTGCCATCCCAGT
CGCCGGGTCGGAAGTACTTGACGTAGCCCTCGCCCTGCAAGAAGAGCCGG
AAGGCCTCGGCCAGCTTAGCCGGCTGCTCCTCCAGCACCAAAGCGCAATC
GGAAATCTTCATCCACGATGAGTTTGTAGGATCTAGACGGCCATTGAAGG
TCACCGTGTCGTCGACGTGCGGCGAGAGCGAACCCGTAATATTGATCACC
GGCATCTTCAGCGTGGTGGCCGCCGTTTCGCTGCCCGGAGTTCCTGGCGG
AGTGCGCGCCAGATGCAGGTCGTTGCGATGGATGTACGCGTTGATCAGCA
TGGCAAGATTGGTCGGATTAACGCCACGCTCGAAGGGCTGCTTGTACATC
TGCACCAGGTCGTGATTGCGCTCCTCCGGATTGCGTCCGAAGTGGTGCCA
CATCATATAATCGATCACGCCCTGTGTCATGCCCTTGGTGCGCAAGAAGC
GGGCATTGAAGCTCTGGTAGCCCCTCTCGATCCAGCCCGACTGCGTG

BO16237.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PK 1230 MESK2-RK 699..1227 547..19 2445 98.4 Minus
CG15669-PC 1314 MESK2-RC 783..1311 547..19 2445 98.4 Minus
CG15669-PB 1278 MESK2-RB 783..1259 547..71 2185 98.3 Minus
CG15669-PA 1344 MESK2-RA 783..1258 547..72 2180 98.3 Minus
CG15669-PF 1344 MESK2-RF 783..1258 547..72 2180 98.3 Minus
CG15669-PJ 1407 MESK2-RJ 486..961 547..72 2180 98.3 Minus
CG15669-PD 1098 MESK2-RD 537..1012 547..72 2180 98.3 Minus
CG15669-PE 1344 MESK2-RE 783..1258 547..72 2180 98.3 Minus
CG15669-PI 1458 MESK2-RI 537..1012 547..72 2180 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 10:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 2193 CG15669-RC 1385..1913 547..19 2525 98.5 Minus
MESK2-RK 2109 CG15669-RK 1301..1829 547..19 2525 98.5 Minus
MESK2-RB 1926 CG15669-RB 1385..1861 547..71 2265 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 10:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511578..21511968 547..157 1835 98 Minus
2R 25286936 2R 21512091..21512177 158..72 435 100 Minus
2R 25286936 2R 21512392..21512445 72..19 270 100 Minus
Blast to na_te.dros performed on 2015-02-08 10:29:38 has no hits.

BO16237.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:57 Download gff for BO16237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PC 783..1314 18..547 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:24:14 Download gff for BO16237.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RK 1301..1829 19..547 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:31:00 Download gff for BO16237.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RK 1301..1829 19..547 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:31:00 Download gff for BO16237.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21512093..21512177 72..156 100 -> Minus
2R 21512393..21512445 19..71 100   Minus
2R 21511578..21511968 157..547 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:24:14 Download gff for BO16237.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17399083..17399473 157..547 97 -> Minus
arm_2R 17399598..17399682 72..156 100 -> Minus
arm_2R 17399898..17399950 19..71 100   Minus

BO16237.5prime Sequence

795 bp (760 high quality bases) assembled on 2006-10-13

> BO16237.5prime
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCATGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCACGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGAATCATTGCGT

BO16237.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PB 1278 MESK2-RB 1..769 17..785 3795 99.7 Plus
CG15669-PA 1344 MESK2-RA 1..769 17..785 3795 99.7 Plus
CG15669-PF 1344 MESK2-RF 1..769 17..785 3795 99.7 Plus
CG15669-PE 1344 MESK2-RE 1..769 17..785 3795 99.7 Plus
CG15669-PC 1314 MESK2-RC 1..769 17..785 3795 99.7 Plus
CG15669-PD 1098 MESK2-RD 1..523 263..785 2565 99.6 Plus
CG15669-PI 1458 MESK2-RI 1..523 263..785 2565 99.6 Plus
CG15669-PK 1230 MESK2-RK 209..685 309..785 2335 99.5 Plus
CG15669-PJ 1407 MESK2-RJ 1..472 314..785 2310 99.5 Plus
CG15669-PK 1230 MESK2-RK 1..209 17..225 1045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 2193 CG15669-RC 602..1381 16..795 3825 99.5 Plus
MESK2-RE 2619 CG15669-RE 575..1354 16..795 3825 99.5 Plus
MESK2-RF 2425 CG15669-RF 381..1160 16..795 3825 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21507513..21507722 16..225 1050 100 Plus
2R 25286936 2R 21510866..21511060 309..503 975 100 Plus
2R 25286936 2R 21511404..21511574 625..795 795 97.7 Plus
2R 25286936 2R 21511123..21511243 504..624 590 99.2 Plus
2R 25286936 2R 21510115..21510201 223..309 435 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:35:10 has no hits.

BO16237.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:57 Download gff for BO16237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PE 1..779 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:18:40 Download gff for BO16237.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 381..1160 16..795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:14:58 Download gff for BO16237.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 381..1160 16..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:58 Download gff for BO16237.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21507513..21507722 16..225 100 -> Plus
2R 21510118..21510201 226..309 100 -> Plus
2R 21510867..21511060 310..503 100 -> Plus
2R 21511123..21511243 504..624 99 -> Plus
2R 21511404..21511574 625..795 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:18:40 Download gff for BO16237.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17395018..17395227 16..225 100 -> Plus
arm_2R 17397623..17397706 226..309 100 -> Plus
arm_2R 17398372..17398565 310..503 100 -> Plus
arm_2R 17398628..17398748 504..624 99 -> Plus
arm_2R 17398909..17399079 625..795 98   Plus

BO16237.complete Sequence

1345 bp assembled on 2007-10-05

GenBank Submission: FJ633746

> BO16237.complete
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCATGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCACGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCA
CGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTC
TTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGTGGCA
CCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAGATGT
ACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCATGCTG
ATCAACGCGTACATCCATCGCAACGACCTGCATCTGGCGCGCACTCCGCC
AGGAACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCGGTGA
TCAATATTACGGGTTCGCTCTCGCCGCACGTCGACGACACGGTGACCTTC
AATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCGATTG
CGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTCCGGC
TCTTCTTGCAGGGCGAGGGCTACGTCAAGTACTTCCGACCCGGCGACTGG
GATGGCACTCAGTTGAGCAGCTTCATCGCAAGCTTTCTAGACCAT

BO16237.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 1314 CG15669-PC 1..1311 17..1327 6450 99.5 Plus
MESK2-RB 1278 CG15669-PB 1..1259 17..1275 6190 99.4 Plus
MESK2-RE 1344 CG15669-PE 1..1258 17..1274 6185 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 2193 CG15669-RC 602..1913 16..1327 6455 99.5 Plus
MESK2-RB 1926 CG15669-RB 602..1861 16..1275 6195 99.4 Plus
MESK2-RE 2619 CG15669-RE 575..1833 16..1274 6190 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511968 625..1189 2735 98.9 Plus
2R 25286936 2R 21507513..21507722 16..225 1050 100 Plus
2R 25286936 2R 21510866..21511060 309..503 975 100 Plus
2R 25286936 2R 21511123..21511243 504..624 590 99.2 Plus
2R 25286936 2R 21510115..21510201 223..309 435 100 Plus
2R 25286936 2R 21512091..21512177 1188..1274 435 100 Plus
2R 25286936 2R 21512392..21512445 1274..1327 270 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:45:10 has no hits.

BO16237.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:58 Download gff for BO16237.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RC 1..1314 17..1328 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:53 Download gff for BO16237.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RC 613..1924 16..1327 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:52 Download gff for BO16237.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RC 603..1913 17..1329 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:59 Download gff for BO16237.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RC 613..1924 16..1327 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:20 Download gff for BO16237.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RC 603..1913 17..1329 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:20 Download gff for BO16237.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21507514..21507722 17..225 100 -> Plus
2R 21510118..21510201 226..309 100 -> Plus
2R 21510867..21511060 310..503 100 -> Plus
2R 21511123..21511243 504..624 99 -> Plus
2R 21511404..21511968 625..1189 98 -> Plus
2R 21512093..21512177 1190..1274 100 -> Plus
2R 21512393..21512445 1275..1329 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:52 Download gff for BO16237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17395019..17395227 17..225 100 -> Plus
arm_2R 17397623..17397706 226..309 100 -> Plus
arm_2R 17398372..17398565 310..503 100 -> Plus
arm_2R 17398628..17398748 504..624 99 -> Plus
arm_2R 17398909..17399473 625..1189 98 -> Plus
arm_2R 17399598..17399682 1190..1274 100 -> Plus
arm_2R 17399898..17399950 1275..1329 96   Plus

BO16237.pep Sequence

Translation from 16 to 1345

> BO16237.pep
MPQSEGGYVSLPAVNGNGGAIYQSTTEPTAPPSVFASVKRAIGQAIKSSP
TDSEELLRSDRLPVIVGGSRDRDKSGKTLTTKMPSAPTHTAEEAHLLGTM
PVDPMDDIELRSVQLQFPNARGSILEACEQRRVPTDKGDVHVAIQGDTAK
PAIITYHDLGLNYATSFAGFFNFPVMRGLLENFCVYHVTAPGQEEGAPTL
PEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFGVGAGANILARFAHAHPDK
VGALCLINCVSTQSGWIEWGYQSFNARFLRTKGMTQGVIDYLMWHHFGRN
PEERNHDLVQMYKQHFERGVNPTNLAMLINAYIHRNDLHLARTPPGTPGS
ETAATTLKMPVINITGSLSPHVDDTVTFNGRLDPTNSSWMKISDCALVLE
EQPAKLAEAFRLFLQGEGYVKYFRPGDWDGTQLSSFIASFLDH

BO16237.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-PC 437 CG15669-PC 1..437 1..437 2315 100 Plus
MESK2-PB 425 CG15669-PB 1..420 1..420 2218 100 Plus
MESK2-PE 447 CG15669-PE 1..419 1..419 2214 100 Plus
MESK2-PF 447 CG15669-PF 1..419 1..419 2214 100 Plus
MESK2-PA 447 CG15669-PA 1..419 1..419 2214 100 Plus