Clone Sequence Records
BO16237.3prime Sequence
547 bp (439 high quality bases) assembled on 2006-10-13
> BO16237.3prime
ATGGTCTAGAAAGCTTGCGATGAAGCTGCTCAACTGAGTGCCATCCCAGT
CGCCGGGTCGGAAGTACTTGACGTAGCCCTCGCCCTGCAAGAAGAGCCGG
AAGGCCTCGGCCAGCTTAGCCGGCTGCTCCTCCAGCACCAAAGCGCAATC
GGAAATCTTCATCCACGATGAGTTTGTAGGATCTAGACGGCCATTGAAGG
TCACCGTGTCGTCGACGTGCGGCGAGAGCGAACCCGTAATATTGATCACC
GGCATCTTCAGCGTGGTGGCCGCCGTTTCGCTGCCCGGAGTTCCTGGCGG
AGTGCGCGCCAGATGCAGGTCGTTGCGATGGATGTACGCGTTGATCAGCA
TGGCAAGATTGGTCGGATTAACGCCACGCTCGAAGGGCTGCTTGTACATC
TGCACCAGGTCGTGATTGCGCTCCTCCGGATTGCGTCCGAAGTGGTGCCA
CATCATATAATCGATCACGCCCTGTGTCATGCCCTTGGTGCGCAAGAAGC
GGGCATTGAAGCTCTGGTAGCCCCTCTCGATCCAGCCCGACTGCGTG
BO16237.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15669-PK | 1230 | MESK2-RK | 699..1227 | 547..19 | 2445 | 98.4 | Minus |
CG15669-PC | 1314 | MESK2-RC | 783..1311 | 547..19 | 2445 | 98.4 | Minus |
CG15669-PB | 1278 | MESK2-RB | 783..1259 | 547..71 | 2185 | 98.3 | Minus |
CG15669-PA | 1344 | MESK2-RA | 783..1258 | 547..72 | 2180 | 98.3 | Minus |
CG15669-PF | 1344 | MESK2-RF | 783..1258 | 547..72 | 2180 | 98.3 | Minus |
CG15669-PJ | 1407 | MESK2-RJ | 486..961 | 547..72 | 2180 | 98.3 | Minus |
CG15669-PD | 1098 | MESK2-RD | 537..1012 | 547..72 | 2180 | 98.3 | Minus |
CG15669-PE | 1344 | MESK2-RE | 783..1258 | 547..72 | 2180 | 98.3 | Minus |
CG15669-PI | 1458 | MESK2-RI | 537..1012 | 547..72 | 2180 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 10:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RC | 2193 | CG15669-RC | 1385..1913 | 547..19 | 2525 | 98.5 | Minus |
MESK2-RK | 2109 | CG15669-RK | 1301..1829 | 547..19 | 2525 | 98.5 | Minus |
MESK2-RB | 1926 | CG15669-RB | 1385..1861 | 547..71 | 2265 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 10:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21511578..21511968 | 547..157 | 1835 | 98 | Minus |
2R | 25286936 | 2R | 21512091..21512177 | 158..72 | 435 | 100 | Minus |
2R | 25286936 | 2R | 21512392..21512445 | 72..19 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 10:29:38 has no hits.
BO16237.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:57 Download gff for
BO16237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15669-PC | 783..1314 | 18..547 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:24:14 Download gff for
BO16237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RK | 1301..1829 | 19..547 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:31:00 Download gff for
BO16237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RK | 1301..1829 | 19..547 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:31:00 Download gff for
BO16237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21512093..21512177 | 72..156 | 100 | -> | Minus |
2R | 21512393..21512445 | 19..71 | 100 | | Minus |
2R | 21511578..21511968 | 157..547 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:24:14 Download gff for
BO16237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17399083..17399473 | 157..547 | 97 | -> | Minus |
arm_2R | 17399598..17399682 | 72..156 | 100 | -> | Minus |
arm_2R | 17399898..17399950 | 19..71 | 100 | | Minus |
BO16237.5prime Sequence
795 bp (760 high quality bases) assembled on 2006-10-13
> BO16237.5prime
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCATGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCACGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGAATCATTGCGT
BO16237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15669-PB | 1278 | MESK2-RB | 1..769 | 17..785 | 3795 | 99.7 | Plus |
CG15669-PA | 1344 | MESK2-RA | 1..769 | 17..785 | 3795 | 99.7 | Plus |
CG15669-PF | 1344 | MESK2-RF | 1..769 | 17..785 | 3795 | 99.7 | Plus |
CG15669-PE | 1344 | MESK2-RE | 1..769 | 17..785 | 3795 | 99.7 | Plus |
CG15669-PC | 1314 | MESK2-RC | 1..769 | 17..785 | 3795 | 99.7 | Plus |
CG15669-PD | 1098 | MESK2-RD | 1..523 | 263..785 | 2565 | 99.6 | Plus |
CG15669-PI | 1458 | MESK2-RI | 1..523 | 263..785 | 2565 | 99.6 | Plus |
CG15669-PK | 1230 | MESK2-RK | 209..685 | 309..785 | 2335 | 99.5 | Plus |
CG15669-PJ | 1407 | MESK2-RJ | 1..472 | 314..785 | 2310 | 99.5 | Plus |
CG15669-PK | 1230 | MESK2-RK | 1..209 | 17..225 | 1045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RC | 2193 | CG15669-RC | 602..1381 | 16..795 | 3825 | 99.5 | Plus |
MESK2-RE | 2619 | CG15669-RE | 575..1354 | 16..795 | 3825 | 99.5 | Plus |
MESK2-RF | 2425 | CG15669-RF | 381..1160 | 16..795 | 3825 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21507513..21507722 | 16..225 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 21510866..21511060 | 309..503 | 975 | 100 | Plus |
2R | 25286936 | 2R | 21511404..21511574 | 625..795 | 795 | 97.7 | Plus |
2R | 25286936 | 2R | 21511123..21511243 | 504..624 | 590 | 99.2 | Plus |
2R | 25286936 | 2R | 21510115..21510201 | 223..309 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:35:10 has no hits.
BO16237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:57 Download gff for
BO16237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15669-PE | 1..779 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:18:40 Download gff for
BO16237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RF | 381..1160 | 16..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:14:58 Download gff for
BO16237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RF | 381..1160 | 16..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:58 Download gff for
BO16237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21507513..21507722 | 16..225 | 100 | -> | Plus |
2R | 21510118..21510201 | 226..309 | 100 | -> | Plus |
2R | 21510867..21511060 | 310..503 | 100 | -> | Plus |
2R | 21511123..21511243 | 504..624 | 99 | -> | Plus |
2R | 21511404..21511574 | 625..795 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:18:40 Download gff for
BO16237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17395018..17395227 | 16..225 | 100 | -> | Plus |
arm_2R | 17397623..17397706 | 226..309 | 100 | -> | Plus |
arm_2R | 17398372..17398565 | 310..503 | 100 | -> | Plus |
arm_2R | 17398628..17398748 | 504..624 | 99 | -> | Plus |
arm_2R | 17398909..17399079 | 625..795 | 98 | | Plus |
BO16237.complete Sequence
1345 bp assembled on 2007-10-05
GenBank Submission: FJ633746
> BO16237.complete
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCATGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCACGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCA
CGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTC
TTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGTGGCA
CCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAGATGT
ACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCATGCTG
ATCAACGCGTACATCCATCGCAACGACCTGCATCTGGCGCGCACTCCGCC
AGGAACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCGGTGA
TCAATATTACGGGTTCGCTCTCGCCGCACGTCGACGACACGGTGACCTTC
AATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCGATTG
CGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTCCGGC
TCTTCTTGCAGGGCGAGGGCTACGTCAAGTACTTCCGACCCGGCGACTGG
GATGGCACTCAGTTGAGCAGCTTCATCGCAAGCTTTCTAGACCAT
BO16237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RC | 1314 | CG15669-PC | 1..1311 | 17..1327 | 6450 | 99.5 | Plus |
MESK2-RB | 1278 | CG15669-PB | 1..1259 | 17..1275 | 6190 | 99.4 | Plus |
MESK2-RE | 1344 | CG15669-PE | 1..1258 | 17..1274 | 6185 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RC | 2193 | CG15669-RC | 602..1913 | 16..1327 | 6455 | 99.5 | Plus |
MESK2-RB | 1926 | CG15669-RB | 602..1861 | 16..1275 | 6195 | 99.4 | Plus |
MESK2-RE | 2619 | CG15669-RE | 575..1833 | 16..1274 | 6190 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21511404..21511968 | 625..1189 | 2735 | 98.9 | Plus |
2R | 25286936 | 2R | 21507513..21507722 | 16..225 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 21510866..21511060 | 309..503 | 975 | 100 | Plus |
2R | 25286936 | 2R | 21511123..21511243 | 504..624 | 590 | 99.2 | Plus |
2R | 25286936 | 2R | 21510115..21510201 | 223..309 | 435 | 100 | Plus |
2R | 25286936 | 2R | 21512091..21512177 | 1188..1274 | 435 | 100 | Plus |
2R | 25286936 | 2R | 21512392..21512445 | 1274..1327 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:45:10 has no hits.
BO16237.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:58 Download gff for
BO16237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RC | 1..1314 | 17..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:53 Download gff for
BO16237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RC | 613..1924 | 16..1327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:52 Download gff for
BO16237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RC | 603..1913 | 17..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:59 Download gff for
BO16237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RC | 613..1924 | 16..1327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:20 Download gff for
BO16237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RC | 603..1913 | 17..1329 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:20 Download gff for
BO16237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21507514..21507722 | 17..225 | 100 | -> | Plus |
2R | 21510118..21510201 | 226..309 | 100 | -> | Plus |
2R | 21510867..21511060 | 310..503 | 100 | -> | Plus |
2R | 21511123..21511243 | 504..624 | 99 | -> | Plus |
2R | 21511404..21511968 | 625..1189 | 98 | -> | Plus |
2R | 21512093..21512177 | 1190..1274 | 100 | -> | Plus |
2R | 21512393..21512445 | 1275..1329 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:52 Download gff for
BO16237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17395019..17395227 | 17..225 | 100 | -> | Plus |
arm_2R | 17397623..17397706 | 226..309 | 100 | -> | Plus |
arm_2R | 17398372..17398565 | 310..503 | 100 | -> | Plus |
arm_2R | 17398628..17398748 | 504..624 | 99 | -> | Plus |
arm_2R | 17398909..17399473 | 625..1189 | 98 | -> | Plus |
arm_2R | 17399598..17399682 | 1190..1274 | 100 | -> | Plus |
arm_2R | 17399898..17399950 | 1275..1329 | 96 | | Plus |
BO16237.pep Sequence
Translation from 16 to 1345
> BO16237.pep
MPQSEGGYVSLPAVNGNGGAIYQSTTEPTAPPSVFASVKRAIGQAIKSSP
TDSEELLRSDRLPVIVGGSRDRDKSGKTLTTKMPSAPTHTAEEAHLLGTM
PVDPMDDIELRSVQLQFPNARGSILEACEQRRVPTDKGDVHVAIQGDTAK
PAIITYHDLGLNYATSFAGFFNFPVMRGLLENFCVYHVTAPGQEEGAPTL
PEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFGVGAGANILARFAHAHPDK
VGALCLINCVSTQSGWIEWGYQSFNARFLRTKGMTQGVIDYLMWHHFGRN
PEERNHDLVQMYKQHFERGVNPTNLAMLINAYIHRNDLHLARTPPGTPGS
ETAATTLKMPVINITGSLSPHVDDTVTFNGRLDPTNSSWMKISDCALVLE
EQPAKLAEAFRLFLQGEGYVKYFRPGDWDGTQLSSFIASFLDH
BO16237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-PC | 437 | CG15669-PC | 1..437 | 1..437 | 2315 | 100 | Plus |
MESK2-PB | 425 | CG15669-PB | 1..420 | 1..420 | 2218 | 100 | Plus |
MESK2-PE | 447 | CG15669-PE | 1..419 | 1..419 | 2214 | 100 | Plus |
MESK2-PF | 447 | CG15669-PF | 1..419 | 1..419 | 2214 | 100 | Plus |
MESK2-PA | 447 | CG15669-PA | 1..419 | 1..419 | 2214 | 100 | Plus |