Clone BO16239 Report

Search the DGRC for BO16239

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptHsc70-1-RC
Protein status:BO16239.pep: validated not full length
Sequenced Size:1699

Clone Sequence Records

BO16239.3prime Sequence

905 bp (859 high quality bases) assembled on 2006-10-13

> BO16239.3prime
ATGGTCTAGAAAGCTTGCATCAACCTCCTCAATGGTTGGACCCGAGCCGC
CAGTTGCTCCTGGATTGGAGCCTCCGGCTGTTGGAGGTGGTGCCATTCCA
GCGCCCTGGTACAACCTCGTGATGATCGGACTGCAGATTCTCTCCAGTTC
CTGCTGCTTGTGCTCGAACTCCTGCCGTTCGGCCAGTTGATTGGCATCCA
ACCAGGCAATTGTTTCACTGGACCGCTGCTGGATGGTCTCCCGATCCGCG
GGGCTAAAACGGCTGCTCAGATGCTCATCGTCCAGAGTGGAGCGCAGCTG
GAAACAGTACGACTCCAGCTGGTTCTTGGCATTGATGCGGTCGCGTTGCT
GCTCATCCGCTTGGCGATAAGCCTCCGCATCATTGACCATCCGCTCGATG
TCCTCCTTGGAGAGACGGCCCTTGTCATTGGTGATAGTGATACGGTTCTC
CTTTCCCGTCGACTTCTCCAGTGCCGTCACATTGAGTATTCCATTGGCAT
CGATGTCAAACGTTACCTCCACCTGGGGCACTCCGCGTGGAGCCGGTGGA
ATTGCCGAGAGTTCAAACTTACCCAGGCTGTTGTTATCTCGCGTCATCGC
CCGCTCGCCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCAT
AAGTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTCTTA
ATCAGCGTAGTCATCACTCCGCCAGCAGTCTCAATACCCAGAGACAGAGG
AGTGACATCCAGCAGGAGCAGATCCTGCACTGCCTCCGATTTATCGCCAT
GGAGGATGGCCGCCTGCACTGCAGCACCATAGGCAACCGCCTCATCGGGA
TTGATGGACTTGTTTAGTTCCTTTGCGTTGAAAAAGTCCTGCAGCAGACG
TTGCA

BO16239.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8937-PC 1668 Hsc70-1-RC 779..1665 905..19 4360 99.6 Minus
CG8937-PA 1926 Hsc70-1-RA 1037..1923 905..19 4360 99.6 Minus
CG8937-PD 1668 Hsc70-1-RD 779..1665 905..19 4360 99.6 Minus
CG4264-PE 1956 Hsc70-4-RE 1510..1559 432..383 175 94 Minus
CG4264-PF 1956 Hsc70-4-RF 1510..1559 432..383 175 94 Minus
CG4264-PA 1956 Hsc70-4-RA 1510..1559 432..383 175 94 Minus
CG4264-PC 1956 Hsc70-4-RC 1510..1559 432..383 175 94 Minus
CG4264-PD 1956 Hsc70-4-RD 1510..1559 432..383 175 94 Minus
CG4264-PB 1956 Hsc70-4-RB 1510..1559 432..383 175 94 Minus
CG4264-PE 1956 Hsc70-4-RE 1162..1231 780..711 150 88.5 Minus
CG4264-PF 1956 Hsc70-4-RF 1162..1231 780..711 150 88.5 Minus
CG4264-PA 1956 Hsc70-4-RA 1162..1231 780..711 150 88.5 Minus
CG4264-PC 1956 Hsc70-4-RC 1162..1231 780..711 150 88.5 Minus
CG4264-PD 1956 Hsc70-4-RD 1162..1231 780..711 150 88.5 Minus
CG4264-PB 1956 Hsc70-4-RB 1162..1231 780..711 150 88.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-RD 2543 CG8937-RD 1530..2416 905..19 4390 99.7 Minus
Hsc70-1-RA 2168 CG8937-RA 1155..2041 905..19 4390 99.7 Minus
Hsc70-1-RC 2611 CG8937-RC 1598..2484 905..19 4390 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13976748..13977634 905..19 4390 99.7 Minus
3R 32079331 3R 15245396..15245954 905..347 1055 79.2 Minus
3R 32079331 3R 11954842..11955259 488..905 260 70.8 Plus
3R 32079331 3R 11959819..11960236 905..488 260 70.8 Minus
3R 32079331 3R 12503782..12504314 905..373 235 69.6 Minus
3R 32079331 3R 12507065..12507597 905..373 235 69.6 Minus
3R 32079331 3R 12510348..12510880 905..373 235 69.6 Minus
3R 32079331 3R 12465995..12466527 373..905 220 69.4 Plus
Blast to na_te.dros performed on 2015-02-10 23:35:21 has no hits.

BO16239.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:46:59 Download gff for BO16239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8937-PD 780..1668 18..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:18:42 Download gff for BO16239.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 1599..2484 19..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:15:40 Download gff for BO16239.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 1599..2484 19..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:15:40 Download gff for BO16239.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13976749..13977634 19..904 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:18:42 Download gff for BO16239.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13969849..13970734 19..904 99   Minus

BO16239.5prime Sequence

835 bp (817 high quality bases) assembled on 2006-10-13

> BO16239.5prime
GAAGTTATCAGTCGACATGAAGCATTGGCCCTTCGAGGTGTTCGCCGAGA
ACGGAAAGCCACGCATCCGTGTGGAGTACAAGGGCGAACGGAAGAGCTTC
TATCCGGAGGAGGTGTCCTCGATGGTGCTGACGAAAATGCGAGAGACCGC
GGAGGCCTACCTGGGCGGCACGGTGACAGATGCGGTTGTCACCGTTCCGG
CGTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCGGGTGCCATT
GCAGGATTGAATGTCCTTCGCATTATCAACGAACCAACGGCGGCGGCCAT
AGCCTACGGCTTGGATAAGCAGGGCACCAGCGAACGAAATGTCTTGATCT
TCGACCTTGGTGGTGGCACCTTCGACGTTTCTGTGCTGACCATCGAGGAT
GGCATCTTCGAGGTGAAGGCAACCGCTGGCGACACCCATCTCGGCGGCGA
GGACTTCGATAACCGGCTGGTGAACCACTTCGTACAGGAGTTTCAGCGCA
AACATAAGAAGGATCTGGGCCAGAACAAGCGGGCTTTGAGGCGACTCCGA
ACCGCGTGTGAAAGGGCAAAACGCACCCTCTCCTCATCCACGCAGGCCAG
CATCGAGATCGATTCCCTCTTTGAGGGCGTCGACTTCTACACCTCGGTGA
CACGGGCCCGCTTCGAAGAGTTGAATGGCGATCTGTTCCGAGGTACCATG
GAACCAGTGGCCAAGGCGCTGCGTGATGCCAAGATGGACAAGGGCCAGAT
ACACGACATCGTCCTTGTGGGTGGCTCCACCAGGATTCCCAAAGTGCAAC
GTCTGCTGCAGGACTTTTTCTACGGCAAGGAACTA

BO16239.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8937-PA 1926 Hsc70-1-RA 256..1077 14..835 4060 99.7 Plus
CG8937-PC 1668 Hsc70-1-RC 1..819 17..835 4045 99.7 Plus
CG8937-PD 1668 Hsc70-1-RD 1..819 17..835 4045 99.7 Plus
CG5436-PA 1908 Hsp68-RA 430..482 197..249 165 92.4 Plus
CG8542-PA 2061 Hsc70-5-RA 586..623 203..240 165 97.3 Plus
CG6489-PA 1926 Hsp70Bc-RA 961..998 725..762 140 94.7 Plus
CG5834-PA 1926 Hsp70Bbb-RA 961..998 725..762 140 94.7 Plus
CG31359-PA 1926 Hsp70Bb-RA 961..998 725..762 140 94.7 Plus
CG31449-PA 1926 Hsp70Ba-RA 961..998 725..762 140 94.7 Plus
CG18743-PA 1929 Hsp70Ab-RA 436..467 203..234 135 96.8 Plus
CG31366-PA 1929 Hsp70Aa-RA 436..467 203..234 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-RD 2543 CG8937-RD 743..1570 9..835 4085 99.6 Plus
Hsc70-1-RA 2168 CG8937-RA 368..1195 9..835 4085 99.6 Plus
Hsc70-1-RC 2611 CG8937-RC 811..1638 9..835 4085 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13975967..13976788 14..835 4080 99.8 Plus
3R 32079331 3R 15244615..15245432 14..831 1135 75.9 Plus
3R 32079331 3R 11955225..11956043 829..14 745 73 Minus
3R 32079331 3R 11959035..11959853 14..829 745 73 Plus
3R 32079331 3R 12506281..12507099 14..829 745 73 Plus
3R 32079331 3R 12509564..12510382 14..829 745 73 Plus
3R 32079331 3R 12466494..12467311 828..14 740 73 Minus
3R 32079331 3R 12502998..12503816 14..829 730 72.9 Plus
3R 32079331 3R 24056049..24056858 820..14 595 71.9 Minus
3R 32079331 3R 13045666..13046126 14..471 590 75.7 Plus
X 23542271 X 11803941..11804118 323..146 275 77 Minus
Blast to na_te.dros performed on 2015-02-10 17:32:28 has no hits.

BO16239.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:00 Download gff for BO16239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8937-PA 250..1076 9..834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:54:20 Download gff for BO16239.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 811..1637 9..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:54 Download gff for BO16239.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 811..1637 9..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:54 Download gff for BO16239.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13975961..13976787 9..834 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:54:20 Download gff for BO16239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13969061..13969887 9..834 99   Plus

BO16239.complete Sequence

1699 bp assembled on 2007-11-30

GenBank Submission: FJ633747

> BO16239.complete
GAAGTTATCAGTCGACATGAAGCATTGGCCCTTCGAGGTGTTCGCCGAGA
ACGGAAAGCCACGCATCCGTGTGGAGTACAAGGGCGAACGGAAGAGCTTC
TATCCGGAGGAGGTGTCCTCGATGGTGCTGACGAAAATGCGAGAGACCGC
GGAGGCCTACCTGGGCGGCACGGTGACAGATGCGGTTGTCACCGTTCCGG
CGTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCGGGTGCCATT
GCAGGATTGAATGTCCTTCGCATTATCAACGAACCAACGGCGGCGGCCAT
AGCCTACGGCTTGGATAAGCAGGGCACCAGCGAACGAAATGTCTTGATCT
TCGACCTTGGTGGTGGCACCTTCGACGTTTCTGTGCTGACCATCGAGGAT
GGCATCTTCGAGGTGAAGGCAACCGCTGGCGACACCCATCTCGGCGGCGA
GGACTTCGATAACCGGCTGGTGAACCACTTCGTACAGGAGTTTCAGCGCA
AACATAAGAAGGATCTGGGCCAGAACAAGCGGGCTTTGAGGCGACTCCGA
ACCGCGTGTGAAAGGGCAAAACGCACCCTCTCCTCATCCACGCAGGCCAG
CATCGAGATCGATTCCCTCTTTGAGGGCGTCGACTTCTACACCTCGGTGA
CACGGGCCCGCTTCGAAGAGTTGAATGGCGATCTGTTCCGAGGTACCATG
GAACCAGTGGCCAAGGCGCTGCGTGATGCCAAGATGGACAAGGGCCAGAT
ACACGACATCGTCCTTGTGGGTGGCTCCACCAGGATTCCCAAAGTGCAAC
GTCTGCTGCAGGACTTTTTCAACGGCAAGGAACTAAACAAGTCCATCAAT
CCCGATGAGGCGGTTGCCTATGGTGCTGCAGTGCAGGCGGCCATCCTCCA
TGGCGATAAATCGGAGGCAGTGCAGGATCTGCTCCTGCTGGATGTCACTC
CTCTGTCTCTGGGTATTGAGACTGCTGGCGGAGTGATGACTACGCTGATT
AAGAGGAACACCACCATACCCACCAAGCAAACGCAAATCTTTACCACTTA
TGCGGACAACCAGCCAGGTGTGCTTATCCAGGTGTTCGAGGGCGAGCGGG
CGATGACGCGAGATAACAACAGCCTGGGTAAGTTTGAACTCTCGGCAATT
CCACCGGCTCCACGCGGAGTGCCCCAGGTGGAGGTAACGTTTGACATCGA
TGCCAATGGAATACTCAATGTGACGGCACTGGAGAAGTCGACGGGAAAGG
AGAACCGTATCACTATCACCAATGACAAGGGCCGTCTCTCCAAGGAGGAC
ATCGAGCGGATGGTCAATGATGCGGAGGCTTATCGCCAAGCGGATGAGCA
GCAACGCGACCGCATCAATGCCAAGAACCAGCTGGAGTCGTACTGTTTCC
AGCTGCGCTCCACTCTGGACGATGAGCATCTGAGCAGCCGTTTTAGCCCC
GCGGATCGGGAGACCATCCAGCAGCGGTCCAGTGAAACAATTGCCTGGTT
GGATGCCAATCAACTGGCCGAACGGCAGGAGTTCGAGCACAAGCAGCAGG
AACTGGAGAGAATCTGCAGTCCGATCATCACGAGGTTGTACCAGGGCGCT
GGAATGGCACCACCTCCAACAGCCGGAGGCTCCAATCCAGGAGCAACTGG
CGGCTCGGGTCCAACCATTGAGGAGGTTGATGCAAGCTTTCTAGACCAT

BO16239.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-RA 1926 CG8937-PA 256..1923 14..1681 8310 99.9 Plus
Hsc70-1-RD 1668 CG8937-PD 1..1665 17..1681 8295 99.9 Plus
Hsc70-1-RC 1668 CG8937-PC 1..1665 17..1681 8295 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-RD 2543 CG8937-RD 749..2416 14..1681 8310 99.9 Plus
Hsc70-1-RA 2168 CG8937-RA 374..2041 14..1681 8310 99.9 Plus
Hsc70-1-RC 2611 CG8937-RC 817..2484 14..1681 8310 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13975967..13977634 14..1681 8310 99.9 Plus
3R 32079331 3R 15244615..15245954 14..1353 2140 77.3 Plus
3R 32079331 3R 11954842..11956043 1212..14 905 71.9 Minus
3R 32079331 3R 11959035..11960236 14..1212 905 71.9 Plus
3R 32079331 3R 12506281..12507597 14..1327 895 71.4 Plus
3R 32079331 3R 12509564..12510880 14..1327 895 71.4 Plus
3R 32079331 3R 12465995..12467311 1327..14 880 71.3 Minus
3R 32079331 3R 12502998..12504314 14..1327 880 71.3 Plus
3R 32079331 3R 24055542..24056858 1327..14 715 70.5 Minus
3R 32079331 3R 13045666..13046878 14..1223 615 70.2 Plus
X 23542271 X 11803941..11804118 323..146 275 77 Minus
2R 25286936 2R 14254880..14254974 282..188 220 82.1 Minus
Blast to na_te.dros performed on 2014-11-27 14:46:54 has no hits.

BO16239.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:01 Download gff for BO16239.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RA 250..1926 9..1682 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:35 Download gff for BO16239.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RD 93..1766 9..1681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:56 Download gff for BO16239.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 820..2484 17..1683 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:40 Download gff for BO16239.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RD 102..1766 17..1683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:41 Download gff for BO16239.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc70-1-RC 820..2484 17..1683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:41 Download gff for BO16239.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13975970..13977634 17..1683 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:56 Download gff for BO16239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13969070..13970734 17..1683 99   Plus

BO16239.pep Sequence

Translation from 16 to 1699

> BO16239.pep
MKHWPFEVFAENGKPRIRVEYKGERKSFYPEEVSSMVLTKMRETAEAYLG
GTVTDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLD
KQGTSERNVLIFDLGGGTFDVSVLTIEDGIFEVKATAGDTHLGGEDFDNR
LVNHFVQEFQRKHKKDLGQNKRALRRLRTACERAKRTLSSSTQASIEIDS
LFEGVDFYTSVTRARFEELNGDLFRGTMEPVAKALRDAKMDKGQIHDIVL
VGGSTRIPKVQRLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSE
AVQDLLLLDVTPLSLGIETAGGVMTTLIKRNTTIPTKQTQIFTTYADNQP
GVLIQVFEGERAMTRDNNSLGKFELSAIPPAPRGVPQVEVTFDIDANGIL
NVTALEKSTGKENRITITNDKGRLSKEDIERMVNDAEAYRQADEQQRDRI
NAKNQLESYCFQLRSTLDDEHLSSRFSPADRETIQQRSSETIAWLDANQL
AERQEFEHKQQELERICSPIITRLYQGAGMAPPPTAGGSNPGATGGSGPT
IEEVDASFLDH

BO16239.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc70-1-PD 555 CG8937-PD 1..555 1..555 2826 100 Plus
Hsc70-1-PA 641 CG8937-PA 87..641 1..555 2826 100 Plus
Hsc70-1-PC 555 CG8937-PC 1..555 1..555 2826 100 Plus
Hsc70-4-PG 651 CG4264-PG 87..651 1..555 2339 79.6 Plus
Hsc70-4-PB 651 CG4264-PB 87..651 1..555 2339 79.6 Plus