Clone BO16244 Report

Search the DGRC for BO16244

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptorb-RC
Protein status:BO16244.pep: validated full length
Sequenced Size:1711

Clone Sequence Records

BO16244.3prime Sequence

933 bp (808 high quality bases) assembled on 2006-10-13

> BO16244.3prime
ATGGTCTAGAAAGCTTGCGATCGCCTGATGCTGTTGACGCTGTATTCGCA
CCTTGTGAATTTGCCGCTGCTGAAGAGTTACCATTGATGTAGCAGCGGCA
TTGGCAGCTCCTGAGTTTCCCATCACGTTGAGACTGTGGGGCTGCGAGTA
TTCTTGCAGCTGACGGTGTTTCTGCTGTTGGTACTGATGCTGCTGGTGCT
GTTGATGCTGACCGTTCCCCATTCTGTTGTCCCTGATACTTCGTTGGCCA
GAGAAGGGTAACGAAACATTCGACGAAGATGGTCCGATGCCAACCAGGCT
CTGCGACTTGGAGTTGCGAGTCAAGGGCTTGTGATTTTTGACGATGTCAC
AGCTGTGCTGCCATTGCCAGCAGCTGCGGCAGAAGTATCGGAAGCACGAT
AATTCCCTACAATAGTAGGGACCGTGCTGCACACCGCATATGGAACATAG
GGCATCCTCCAAGTAGGGATCCACCTGCACCTTCTTGGTGAACTTCGTGG
TCCTAATCTCGATAAAGGCGGCCGAAACAGCTTTCATGTAGGAGCGAAAG
TTGCTAAATGTCACACGTCCCGATCCGATCGGGTACTTGTACTTGTCCGT
ATCTATACCAGCATACAGCACGCCGTCGAAAAGATCATCCATTATATTTC
CCAAGCCCTCGGCAGTCAGTTTTCCATGCAGTGCGCCCACAAACACGGTT
TTCGTTGGGTCAAGTTTCTGGGAGCTGGATCGCACAAAATTGGAGTCAGC
GATAATCCAAGGAATGACTTCAACATCCTTGGACTTAATACGCCGCGAAG
AGATTTTGAAGAAGTAGTTCCTACCACAGTGAGAATCATCCACCTGAAGC
ACACAGGCCGAAAGTAATGCCTTGACCTGCTTTGTCGATTCAAAGATATG
TAAACATAACCCTTGGGCTGAGCCGCCTGCTGC

BO16244.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10868-PA 2748 orb-RA 1830..2745 933..19 4440 99.4 Minus
CG10868-PC 1680 orb-RC 762..1677 933..19 4440 99.4 Minus
CG10868-PB 2742 orb-RB 1824..2739 933..19 4440 99.4 Minus
CG10868-PD 2742 orb-RD 1824..2739 933..19 4440 99.4 Minus
CG10868-PE 1680 orb-RE 762..1677 933..19 4440 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
orb-RG 8899 CG10868-RG 2738..3653 933..19 4495 99.6 Minus
orb-RF 3079 CG10868-RF 1962..2877 933..19 4495 99.6 Minus
orb-RE 1964 CG10868-RE 833..1748 933..19 4495 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23266280..23266665 389..774 1915 99.7 Plus
3R 32079331 3R 23265856..23266226 19..389 1855 100 Plus
3R 32079331 3R 23266719..23266880 773..933 715 97.5 Plus
Blast to na_te.dros performed 2015-02-03 05:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2536 237..23 226 59.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6947 240..101 207 64.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1506..1601 248..149 157 67.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6944 246..127 152 64 Minus

BO16244.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:04 Download gff for BO16244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10868-PE 762..1680 18..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:16:14 Download gff for BO16244.3prime
Subject Subject Range Query Range Percent Splice Strand
orb-RE 833..1748 19..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:28:10 Download gff for BO16244.3prime
Subject Subject Range Query Range Percent Splice Strand
orb-RE 833..1748 19..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:28:10 Download gff for BO16244.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23265856..23266225 19..388 100 <- Plus
3R 23266280..23266665 389..774 99 <- Plus
3R 23266721..23266880 775..933 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:16:14 Download gff for BO16244.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19091578..19091947 19..388 100 <- Plus
arm_3R 19092002..19092387 389..774 99 <- Plus
arm_3R 19092443..19092602 775..933 98   Plus

BO16244.5prime Sequence

831 bp (803 high quality bases) assembled on 2006-10-13

> BO16244.5prime
GAAGTTATCAGTCGACATGGCTAAAGTTTTACGTGTGAATTTGCTGTCTG
TAAATAGCAACAAAATTCCACATCAACAACAGCAACAACAACAGCAGCAG
CAGCAACAACAGCAGCAGCAACAACAGAATCAGCAGCAATTGCAGGTTCA
GCAACAACATCAGTTGCAGCAGCAGTTTGTTAACCTAAACAGGAACTACG
AGCAACAGATATCTGCCAATTTGGGTAGCCAACAACATGGGTTCGAGCAC
AACGGCGTGGGTGTGGGTGCTTCTAGTAGCGGAAATGAGAACTGCTTTAG
CCAGTATAATCTAGAAAACATCACCAGTGTGGACATGGAGCTGGCCAAAC
TGCAGAATTTGCAACGCATCAACACGCTAAAGCTCCTGCATGCCCAAGCT
CAACAAATGCCGCTGATCAACCAGCTCCTGCAGAGCTATGCCGGCAACGC
CATAGGCAGCGTCGGTGGAAGCAATCTTGGTAACTTGATGAGCGCAGGCG
GATCATCACTGATGACAGAAATGGCGGGAAACGTTGGCGGCATTATAACC
ACCAACGATGGCCACCTGGATCGCGTAGCTAAGTTCTATAAGAGTTCGGC
TGCCCTGTGCGATGCCACATGCACATGGAGTGGACACCTGCCGCCGCGTT
CGCACCGTATGCTCAACTATTCTCCCAAGGTCTTCCTCGGCGGGATTCCC
TGGGATATTAGTGAGCAGTCGCTCATCCAGATCTTCAAGCCATTTGGATC
TATTAAAGTGGAGTGGCCCGGCAAGGAGCAGCAGGCGGCTCAGCCCAAGG
GTTATGTTTACATAATCTTTGAATCGGACAA

BO16244.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10868-PC 1680 orb-RC 1..815 17..831 4050 99.8 Plus
CG10868-PE 1680 orb-RE 1..815 17..831 4050 99.8 Plus
CG10868-PA 2748 orb-RA 1090..1883 38..831 3945 99.8 Plus
CG10868-PB 2742 orb-RB 1084..1877 38..831 3945 99.8 Plus
CG10868-PD 2742 orb-RD 1084..1877 38..831 3945 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
orb-RE 1964 CG10868-RE 72..886 17..831 4060 99.9 Plus
orb-RC 2957 CG10868-RC 72..886 17..831 4060 99.9 Plus
orb-RG 8899 CG10868-RG 1998..2791 38..831 3955 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23266962..23267681 756..37 3585 99.9 Minus
3R 32079331 3R 23266827..23266901 831..757 375 100 Minus
Blast to na_te.dros performed on 2015-02-02 16:01:29 has no hits.

BO16244.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:04 Download gff for BO16244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10868-PE 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:26:38 Download gff for BO16244.5prime
Subject Subject Range Query Range Percent Splice Strand
orb-RC 67..884 11..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:57:43 Download gff for BO16244.5prime
Subject Subject Range Query Range Percent Splice Strand
orb-RC 67..884 11..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 18:57:43 Download gff for BO16244.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23266829..23266901 757..829 100 <- Minus
3R 23266962..23267680 38..756 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:26:38 Download gff for BO16244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19092551..19092623 757..829 100 <- Minus
arm_3R 19092684..19093402 38..756 99 <- Minus

BO16244.complete Sequence

1711 bp assembled on 2007-03-23

GenBank Submission: FJ633748

> BO16244.complete
GAAGTTATCAGTCGACATGGCTAAAGTTTTACGTGTGAATTTGCTGTCTG
TAAATAGCAACAAAATTCCACATCAACAACAGCAACAACAACAGCAGCAG
CAGCAACAACAGCAGCAGCAACAACAGAATCAGCAGCAATTGCAGGTTCA
GCAACAACATCAGTTGCAGCAGCAGTTTGTTAACCTAAACAGGAACTACG
AGCAACAGATATCTGCCAATTTGGGTAGCCAACAACATGGGTTCGAGCAC
AACGGCGTGGGTGTGGGTGCTTCTAGTAGCGGAAATGAGAACTGCTTTAG
CCAGTATAATCTAGAAAACATCACCAGTGTGGACATGGAGCTGGCCAAAC
TGCAGAATTTGCAACGCATCAACACGCTAAAGCTCCTGCATGCCCAAGCT
CAACAAATGCCGCTGATCAACCAGCTCCTGCAGAGCTATGCCGGCAACGC
CATAGGCAGCGTCGGTGGAAGCAATCTTGGTAACTTGATGAGCGCAGGCG
GATCATCACTGATGACAGAAATGGCGGGAAACGTTGGCGGCATTATAACC
ACCAACGATGGCCACCTGGATCGCGTAGCTAAGTTCTATAAGAGTTCGGC
TGCCCTGTGCGATGCCACATGCACATGGAGTGGACACCTGCCGCCGCGTT
CGCACCGTATGCTCAACTATTCTCCCAAGGTCTTCCTCGGCGGGATTCCC
TGGGATATTAGTGAGCAGTCGCTCATCCAGATCTTCAAGCCATTTGGATC
TATTAAAGTGGAGTGGCCCGGCAAGGAGCAGCAGGCGGCTCAGCCCAAGG
GTTATGTTTACATAATCTTTGAATCGGACAAGCAGGTCAAGGCATTACTT
TCGGCCTGTGTGCTTCAGGTGGATGATTCTCACTGTGGTAGGAACTACTT
CTTCAAAATCTCTTCGCGGCGTATTAAGTCCAAGGATGTTGAAGTCATTC
CTTGGATTATCGCTGACTCCAATTTTGTGCGATCCAGCTCCCAGAAACTT
GACCCAACGAAAACCGTGTTTGTGGGCGCACTGCATGGAAAACTGACTGC
CGAGGGCTTGGGAAATATAATGGATGATCTTTTCGACGGCGTGCTGTATG
CTGGTATAGATACGGACAAGTACAAGTACCCGATCGGATCGGGACGTGTG
ACATTTAGCAACTTTCGCTCCTACATGAAAGCTGTTTCGGCCGCCTTTAT
CGAGATTAGGACCACGAAGTTCACCAAGAAGGTGCAGGTGGATCCCTACT
TGGAGGATGCCCTATGTTCCATATGCGGTGTGCAGCACGGTCCCTACTAT
TGTAGGGAATTATCGTGCTTCCGATACTTCTGCCGCAGCTGCTGGCAATG
GCAGCACAGCTGTGACATCGTCAAAAATCACAAGCCCTTGACTCGCAACT
CCAAGTCGCAGAGCCTGGTTGGCATCGGACCATCTTCGTCGAATGTTTCG
TTACCCTTCTCTGGCCAACGAAGTATCAGGGACAACAGAATGGGGAACGG
TCAGCATCAACAGCACCAGCAGCATCAGTACCAACAGCAGAAACACCGTC
AGCTGCAAGAATACTCGCAGCCCCACAGTCTCAACGTGATGGGAAACTCA
GGAGCTGCCAATGCCGCTGCTACATCAATGGTAACTCTTCAGCAGCGGCA
AATTCACAAGGTGCGAATACAGCGTCAACAGCATCAGGCGATCGCAAGCT
TTCTAGACCAT

BO16244.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
orb-RE 1680 CG10868-PE 1..1677 17..1693 8355 99.9 Plus
orb-RC 1680 CG10868-PC 1..1677 17..1693 8355 99.9 Plus
orb-RG 2748 CG10868-PG 1090..2745 38..1693 8250 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
orb-RE 1964 CG10868-RE 72..1748 17..1693 8355 99.9 Plus
orb-RC 2957 CG10868-RC 72..1748 17..1693 8355 99.9 Plus
orb-RG 8899 CG10868-RG 1998..3653 38..1693 8250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23266962..23267681 756..37 3585 99.9 Minus
3R 32079331 3R 23266280..23266665 1323..938 1915 99.7 Minus
3R 32079331 3R 23265856..23266226 1693..1323 1855 100 Minus
3R 32079331 3R 23266719..23266901 939..757 915 100 Minus
Blast to na_te.dros performed 2014-11-26 21:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2536 1475..1689 226 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6810..6947 1472..1611 207 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1506..1601 1464..1563 157 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6944 1466..1585 152 64 Plus

BO16244.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:11 Download gff for BO16244.complete
Subject Subject Range Query Range Percent Splice Strand
orb-RE 1..1680 17..1694 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:16 Download gff for BO16244.complete
Subject Subject Range Query Range Percent Splice Strand
orb-RE 67..1748 11..1693 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:36 Download gff for BO16244.complete
Subject Subject Range Query Range Percent Splice Strand
orb-RC 72..1748 17..1695 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:11 Download gff for BO16244.complete
Subject Subject Range Query Range Percent Splice Strand
orb-RE 67..1748 11..1693 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:11 Download gff for BO16244.complete
Subject Subject Range Query Range Percent Splice Strand
orb-RC 72..1748 17..1695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:11 Download gff for BO16244.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23265854..23266225 1324..1695 99 <- Minus
3R 23266280..23266665 938..1323 99 <- Minus
3R 23266721..23266901 757..937 100 <- Minus
3R 23266962..23267680 38..756 99 <- Minus
3R 23267821..23267841 17..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:36 Download gff for BO16244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19091576..19091947 1324..1695 99 <- Minus
arm_3R 19092002..19092387 938..1323 99 <- Minus
arm_3R 19092443..19092623 757..937 100 <- Minus
arm_3R 19092684..19093402 38..756 99 <- Minus
arm_3R 19093543..19093563 17..37 100   Minus

BO16244.pep Sequence

Translation from 16 to 1711

> BO16244.pep
MAKVLRVNLLSVNSNKIPHQQQQQQQQQQQQQQQQQQNQQQLQVQQQHQL
QQQFVNLNRNYEQQISANLGSQQHGFEHNGVGVGASSSGNENCFSQYNLE
NITSVDMELAKLQNLQRINTLKLLHAQAQQMPLINQLLQSYAGNAIGSVG
GSNLGNLMSAGGSSLMTEMAGNVGGIITTNDGHLDRVAKFYKSSAALCDA
TCTWSGHLPPRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEW
PGKEQQAAQPKGYVYIIFESDKQVKALLSACVLQVDDSHCGRNYFFKISS
RRIKSKDVEVIPWIIADSNFVRSSSQKLDPTKTVFVGALHGKLTAEGLGN
IMDDLFDGVLYAGIDTDKYKYPIGSGRVTFSNFRSYMKAVSAAFIEIRTT
KFTKKVQVDPYLEDALCSICGVQHGPYYCRELSCFRYFCRSCWQWQHSCD
IVKNHKPLTRNSKSQSLVGIGPSSSNVSLPFSGQRSIRDNRMGNGQHQQH
QQHQYQQQKHRQLQEYSQPHSLNVMGNSGAANAAATSMVTLQQRQIHKVR
IQRQQHQAIASFLDH

BO16244.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
orb-PE 559 CG10868-PE 1..559 1..559 2930 100 Plus
orb-PC 559 CG10868-PC 1..559 1..559 2930 100 Plus
orb-PG 915 CG10868-PG 363..915 7..559 2902 99.8 Plus
orb-PF 617 CG10868-PF 65..617 7..559 2902 99.8 Plus
orb-PD 913 CG10868-PD 361..913 7..559 2902 99.8 Plus