Clone Sequence Records
BO16244.3prime Sequence
933 bp (808 high quality bases) assembled on 2006-10-13
> BO16244.3prime
ATGGTCTAGAAAGCTTGCGATCGCCTGATGCTGTTGACGCTGTATTCGCA
CCTTGTGAATTTGCCGCTGCTGAAGAGTTACCATTGATGTAGCAGCGGCA
TTGGCAGCTCCTGAGTTTCCCATCACGTTGAGACTGTGGGGCTGCGAGTA
TTCTTGCAGCTGACGGTGTTTCTGCTGTTGGTACTGATGCTGCTGGTGCT
GTTGATGCTGACCGTTCCCCATTCTGTTGTCCCTGATACTTCGTTGGCCA
GAGAAGGGTAACGAAACATTCGACGAAGATGGTCCGATGCCAACCAGGCT
CTGCGACTTGGAGTTGCGAGTCAAGGGCTTGTGATTTTTGACGATGTCAC
AGCTGTGCTGCCATTGCCAGCAGCTGCGGCAGAAGTATCGGAAGCACGAT
AATTCCCTACAATAGTAGGGACCGTGCTGCACACCGCATATGGAACATAG
GGCATCCTCCAAGTAGGGATCCACCTGCACCTTCTTGGTGAACTTCGTGG
TCCTAATCTCGATAAAGGCGGCCGAAACAGCTTTCATGTAGGAGCGAAAG
TTGCTAAATGTCACACGTCCCGATCCGATCGGGTACTTGTACTTGTCCGT
ATCTATACCAGCATACAGCACGCCGTCGAAAAGATCATCCATTATATTTC
CCAAGCCCTCGGCAGTCAGTTTTCCATGCAGTGCGCCCACAAACACGGTT
TTCGTTGGGTCAAGTTTCTGGGAGCTGGATCGCACAAAATTGGAGTCAGC
GATAATCCAAGGAATGACTTCAACATCCTTGGACTTAATACGCCGCGAAG
AGATTTTGAAGAAGTAGTTCCTACCACAGTGAGAATCATCCACCTGAAGC
ACACAGGCCGAAAGTAATGCCTTGACCTGCTTTGTCGATTCAAAGATATG
TAAACATAACCCTTGGGCTGAGCCGCCTGCTGC
BO16244.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10868-PA | 2748 | orb-RA | 1830..2745 | 933..19 | 4440 | 99.4 | Minus |
CG10868-PC | 1680 | orb-RC | 762..1677 | 933..19 | 4440 | 99.4 | Minus |
CG10868-PB | 2742 | orb-RB | 1824..2739 | 933..19 | 4440 | 99.4 | Minus |
CG10868-PD | 2742 | orb-RD | 1824..2739 | 933..19 | 4440 | 99.4 | Minus |
CG10868-PE | 1680 | orb-RE | 762..1677 | 933..19 | 4440 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
orb-RG | 8899 | CG10868-RG | 2738..3653 | 933..19 | 4495 | 99.6 | Minus |
orb-RF | 3079 | CG10868-RF | 1962..2877 | 933..19 | 4495 | 99.6 | Minus |
orb-RE | 1964 | CG10868-RE | 833..1748 | 933..19 | 4495 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23266280..23266665 | 389..774 | 1915 | 99.7 | Plus |
3R | 32079331 | 3R | 23265856..23266226 | 19..389 | 1855 | 100 | Plus |
3R | 32079331 | 3R | 23266719..23266880 | 773..933 | 715 | 97.5 | Plus |
Blast to na_te.dros performed 2015-02-03 05:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2536 | 237..23 | 226 | 59.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6947 | 240..101 | 207 | 64.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1601 | 248..149 | 157 | 67.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6944 | 246..127 | 152 | 64 | Minus |
BO16244.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:04 Download gff for
BO16244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10868-PE | 762..1680 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:16:14 Download gff for
BO16244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
orb-RE | 833..1748 | 19..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:28:10 Download gff for
BO16244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
orb-RE | 833..1748 | 19..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:28:10 Download gff for
BO16244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23265856..23266225 | 19..388 | 100 | <- | Plus |
3R | 23266280..23266665 | 389..774 | 99 | <- | Plus |
3R | 23266721..23266880 | 775..933 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:16:14 Download gff for
BO16244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19091578..19091947 | 19..388 | 100 | <- | Plus |
arm_3R | 19092002..19092387 | 389..774 | 99 | <- | Plus |
arm_3R | 19092443..19092602 | 775..933 | 98 | | Plus |
BO16244.5prime Sequence
831 bp (803 high quality bases) assembled on 2006-10-13
> BO16244.5prime
GAAGTTATCAGTCGACATGGCTAAAGTTTTACGTGTGAATTTGCTGTCTG
TAAATAGCAACAAAATTCCACATCAACAACAGCAACAACAACAGCAGCAG
CAGCAACAACAGCAGCAGCAACAACAGAATCAGCAGCAATTGCAGGTTCA
GCAACAACATCAGTTGCAGCAGCAGTTTGTTAACCTAAACAGGAACTACG
AGCAACAGATATCTGCCAATTTGGGTAGCCAACAACATGGGTTCGAGCAC
AACGGCGTGGGTGTGGGTGCTTCTAGTAGCGGAAATGAGAACTGCTTTAG
CCAGTATAATCTAGAAAACATCACCAGTGTGGACATGGAGCTGGCCAAAC
TGCAGAATTTGCAACGCATCAACACGCTAAAGCTCCTGCATGCCCAAGCT
CAACAAATGCCGCTGATCAACCAGCTCCTGCAGAGCTATGCCGGCAACGC
CATAGGCAGCGTCGGTGGAAGCAATCTTGGTAACTTGATGAGCGCAGGCG
GATCATCACTGATGACAGAAATGGCGGGAAACGTTGGCGGCATTATAACC
ACCAACGATGGCCACCTGGATCGCGTAGCTAAGTTCTATAAGAGTTCGGC
TGCCCTGTGCGATGCCACATGCACATGGAGTGGACACCTGCCGCCGCGTT
CGCACCGTATGCTCAACTATTCTCCCAAGGTCTTCCTCGGCGGGATTCCC
TGGGATATTAGTGAGCAGTCGCTCATCCAGATCTTCAAGCCATTTGGATC
TATTAAAGTGGAGTGGCCCGGCAAGGAGCAGCAGGCGGCTCAGCCCAAGG
GTTATGTTTACATAATCTTTGAATCGGACAA
BO16244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10868-PC | 1680 | orb-RC | 1..815 | 17..831 | 4050 | 99.8 | Plus |
CG10868-PE | 1680 | orb-RE | 1..815 | 17..831 | 4050 | 99.8 | Plus |
CG10868-PA | 2748 | orb-RA | 1090..1883 | 38..831 | 3945 | 99.8 | Plus |
CG10868-PB | 2742 | orb-RB | 1084..1877 | 38..831 | 3945 | 99.8 | Plus |
CG10868-PD | 2742 | orb-RD | 1084..1877 | 38..831 | 3945 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
orb-RE | 1964 | CG10868-RE | 72..886 | 17..831 | 4060 | 99.9 | Plus |
orb-RC | 2957 | CG10868-RC | 72..886 | 17..831 | 4060 | 99.9 | Plus |
orb-RG | 8899 | CG10868-RG | 1998..2791 | 38..831 | 3955 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23266962..23267681 | 756..37 | 3585 | 99.9 | Minus |
3R | 32079331 | 3R | 23266827..23266901 | 831..757 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 16:01:29 has no hits.
BO16244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:04 Download gff for
BO16244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10868-PE | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:26:38 Download gff for
BO16244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
orb-RC | 67..884 | 11..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:57:43 Download gff for
BO16244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
orb-RC | 67..884 | 11..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 18:57:43 Download gff for
BO16244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23266829..23266901 | 757..829 | 100 | <- | Minus |
3R | 23266962..23267680 | 38..756 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:26:38 Download gff for
BO16244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19092551..19092623 | 757..829 | 100 | <- | Minus |
arm_3R | 19092684..19093402 | 38..756 | 99 | <- | Minus |
BO16244.complete Sequence
1711 bp assembled on 2007-03-23
GenBank Submission: FJ633748
> BO16244.complete
GAAGTTATCAGTCGACATGGCTAAAGTTTTACGTGTGAATTTGCTGTCTG
TAAATAGCAACAAAATTCCACATCAACAACAGCAACAACAACAGCAGCAG
CAGCAACAACAGCAGCAGCAACAACAGAATCAGCAGCAATTGCAGGTTCA
GCAACAACATCAGTTGCAGCAGCAGTTTGTTAACCTAAACAGGAACTACG
AGCAACAGATATCTGCCAATTTGGGTAGCCAACAACATGGGTTCGAGCAC
AACGGCGTGGGTGTGGGTGCTTCTAGTAGCGGAAATGAGAACTGCTTTAG
CCAGTATAATCTAGAAAACATCACCAGTGTGGACATGGAGCTGGCCAAAC
TGCAGAATTTGCAACGCATCAACACGCTAAAGCTCCTGCATGCCCAAGCT
CAACAAATGCCGCTGATCAACCAGCTCCTGCAGAGCTATGCCGGCAACGC
CATAGGCAGCGTCGGTGGAAGCAATCTTGGTAACTTGATGAGCGCAGGCG
GATCATCACTGATGACAGAAATGGCGGGAAACGTTGGCGGCATTATAACC
ACCAACGATGGCCACCTGGATCGCGTAGCTAAGTTCTATAAGAGTTCGGC
TGCCCTGTGCGATGCCACATGCACATGGAGTGGACACCTGCCGCCGCGTT
CGCACCGTATGCTCAACTATTCTCCCAAGGTCTTCCTCGGCGGGATTCCC
TGGGATATTAGTGAGCAGTCGCTCATCCAGATCTTCAAGCCATTTGGATC
TATTAAAGTGGAGTGGCCCGGCAAGGAGCAGCAGGCGGCTCAGCCCAAGG
GTTATGTTTACATAATCTTTGAATCGGACAAGCAGGTCAAGGCATTACTT
TCGGCCTGTGTGCTTCAGGTGGATGATTCTCACTGTGGTAGGAACTACTT
CTTCAAAATCTCTTCGCGGCGTATTAAGTCCAAGGATGTTGAAGTCATTC
CTTGGATTATCGCTGACTCCAATTTTGTGCGATCCAGCTCCCAGAAACTT
GACCCAACGAAAACCGTGTTTGTGGGCGCACTGCATGGAAAACTGACTGC
CGAGGGCTTGGGAAATATAATGGATGATCTTTTCGACGGCGTGCTGTATG
CTGGTATAGATACGGACAAGTACAAGTACCCGATCGGATCGGGACGTGTG
ACATTTAGCAACTTTCGCTCCTACATGAAAGCTGTTTCGGCCGCCTTTAT
CGAGATTAGGACCACGAAGTTCACCAAGAAGGTGCAGGTGGATCCCTACT
TGGAGGATGCCCTATGTTCCATATGCGGTGTGCAGCACGGTCCCTACTAT
TGTAGGGAATTATCGTGCTTCCGATACTTCTGCCGCAGCTGCTGGCAATG
GCAGCACAGCTGTGACATCGTCAAAAATCACAAGCCCTTGACTCGCAACT
CCAAGTCGCAGAGCCTGGTTGGCATCGGACCATCTTCGTCGAATGTTTCG
TTACCCTTCTCTGGCCAACGAAGTATCAGGGACAACAGAATGGGGAACGG
TCAGCATCAACAGCACCAGCAGCATCAGTACCAACAGCAGAAACACCGTC
AGCTGCAAGAATACTCGCAGCCCCACAGTCTCAACGTGATGGGAAACTCA
GGAGCTGCCAATGCCGCTGCTACATCAATGGTAACTCTTCAGCAGCGGCA
AATTCACAAGGTGCGAATACAGCGTCAACAGCATCAGGCGATCGCAAGCT
TTCTAGACCAT
BO16244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
orb-RE | 1680 | CG10868-PE | 1..1677 | 17..1693 | 8355 | 99.9 | Plus |
orb-RC | 1680 | CG10868-PC | 1..1677 | 17..1693 | 8355 | 99.9 | Plus |
orb-RG | 2748 | CG10868-PG | 1090..2745 | 38..1693 | 8250 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
orb-RE | 1964 | CG10868-RE | 72..1748 | 17..1693 | 8355 | 99.9 | Plus |
orb-RC | 2957 | CG10868-RC | 72..1748 | 17..1693 | 8355 | 99.9 | Plus |
orb-RG | 8899 | CG10868-RG | 1998..3653 | 38..1693 | 8250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23266962..23267681 | 756..37 | 3585 | 99.9 | Minus |
3R | 32079331 | 3R | 23266280..23266665 | 1323..938 | 1915 | 99.7 | Minus |
3R | 32079331 | 3R | 23265856..23266226 | 1693..1323 | 1855 | 100 | Minus |
3R | 32079331 | 3R | 23266719..23266901 | 939..757 | 915 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2536 | 1475..1689 | 226 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6947 | 1472..1611 | 207 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1601 | 1464..1563 | 157 | 67.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6944 | 1466..1585 | 152 | 64 | Plus |
BO16244.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:11 Download gff for
BO16244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
orb-RE | 1..1680 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:16 Download gff for
BO16244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
orb-RE | 67..1748 | 11..1693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:36 Download gff for
BO16244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
orb-RC | 72..1748 | 17..1695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:11 Download gff for
BO16244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
orb-RE | 67..1748 | 11..1693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:11 Download gff for
BO16244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
orb-RC | 72..1748 | 17..1695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:11 Download gff for
BO16244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23265854..23266225 | 1324..1695 | 99 | <- | Minus |
3R | 23266280..23266665 | 938..1323 | 99 | <- | Minus |
3R | 23266721..23266901 | 757..937 | 100 | <- | Minus |
3R | 23266962..23267680 | 38..756 | 99 | <- | Minus |
3R | 23267821..23267841 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:36 Download gff for
BO16244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19091576..19091947 | 1324..1695 | 99 | <- | Minus |
arm_3R | 19092002..19092387 | 938..1323 | 99 | <- | Minus |
arm_3R | 19092443..19092623 | 757..937 | 100 | <- | Minus |
arm_3R | 19092684..19093402 | 38..756 | 99 | <- | Minus |
arm_3R | 19093543..19093563 | 17..37 | 100 | | Minus |
BO16244.pep Sequence
Translation from 16 to 1711
> BO16244.pep
MAKVLRVNLLSVNSNKIPHQQQQQQQQQQQQQQQQQQNQQQLQVQQQHQL
QQQFVNLNRNYEQQISANLGSQQHGFEHNGVGVGASSSGNENCFSQYNLE
NITSVDMELAKLQNLQRINTLKLLHAQAQQMPLINQLLQSYAGNAIGSVG
GSNLGNLMSAGGSSLMTEMAGNVGGIITTNDGHLDRVAKFYKSSAALCDA
TCTWSGHLPPRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEW
PGKEQQAAQPKGYVYIIFESDKQVKALLSACVLQVDDSHCGRNYFFKISS
RRIKSKDVEVIPWIIADSNFVRSSSQKLDPTKTVFVGALHGKLTAEGLGN
IMDDLFDGVLYAGIDTDKYKYPIGSGRVTFSNFRSYMKAVSAAFIEIRTT
KFTKKVQVDPYLEDALCSICGVQHGPYYCRELSCFRYFCRSCWQWQHSCD
IVKNHKPLTRNSKSQSLVGIGPSSSNVSLPFSGQRSIRDNRMGNGQHQQH
QQHQYQQQKHRQLQEYSQPHSLNVMGNSGAANAAATSMVTLQQRQIHKVR
IQRQQHQAIASFLDH
BO16244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
orb-PE | 559 | CG10868-PE | 1..559 | 1..559 | 2930 | 100 | Plus |
orb-PC | 559 | CG10868-PC | 1..559 | 1..559 | 2930 | 100 | Plus |
orb-PG | 915 | CG10868-PG | 363..915 | 7..559 | 2902 | 99.8 | Plus |
orb-PF | 617 | CG10868-PF | 65..617 | 7..559 | 2902 | 99.8 | Plus |
orb-PD | 913 | CG10868-PD | 361..913 | 7..559 | 2902 | 99.8 | Plus |