Clone Sequence Records
BO16245.3prime Sequence
799 bp (729 high quality bases) assembled on 2006-10-13
> BO16245.3prime
ATGGTCTAGAAAGCTTGCCCAGCGGTTCGTATAGAACTGATTGATGCCAA
GCACATGCTTCTCCTCATGGTACTTTTGAAGGATATGTGTGATGACCGAG
GTTGTGTCGTTGTCGCCACGCCACACGCGTATCGCATGTTCGTTTTCCAG
GATGCCCAGAAATGCCAAAAAAGTCTTTGGATTGCTTAGGGTCATCTGGA
CTTGTGGCATTTCCAGGATCACCTTTAGGATGGGCGAATCGGGCGCCAAG
CCTTCACGCAGTTCAATAACGCTACCCGATCGATTGTCGCACAACCATTC
GCACGCGGACGCCTTGTTGTTGCCAGTTTTCTTCAGCGCCGCAAGCACTG
CCGTCTCCTCGAAGCCCATTTCTGTAAGCGATTCTACAATCTCATCGCTG
GGAGGGGAATCCCGGTGGCTGTAGATTCGTACAATCTCAATCAAGGCAGC
AGTGTTTTCAATGGTTTCATTATTGGTGACAATCGTGGAGGGTGAGATGG
AAGATAGACTGTGCTGCATATTCATGCCCGGCGGTTCCTGTGGATTTTCC
TCGTTTTGGTTCTGTATTAGCCACTCCATCGTGGTCGAGTAAATGCCATT
GTGTGCTTTTAAGGCAAATGCGGCTAGCTCCCGCTTGAAGCCCATGTCCA
CGAGGCATTGCAGCGTATCCGCTTGCTGATTTCGGCGATTGATCAAACGT
TGCTTTAGCATAGCTATCAGGCGTGGAGCATAANGGCCAGCTCCTATAAC
CGCCGCAGAAGCTTGAGCCAAAGAGATCAACACCTTTCGCACATCGTAT
BO16245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11025-PA | 1674 | isopeptidase-T-3-RA | 891..1671 | 799..19 | 3811 | 99.4 | Minus |
CG11025-PB | 1308 | isopeptidase-T-3-RB | 525..1305 | 799..19 | 3811 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 1040..1820 | 799..19 | 3849 | 99.5 | Minus |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 629..1409 | 799..19 | 3849 | 99.5 | Minus |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 1028..1808 | 799..19 | 3849 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671911..19672242 | 799..468 | 1649 | 99.7 | Minus |
2R | 25286936 | 2R | 19672294..19672597 | 468..165 | 1475 | 99 | Minus |
2R | 25286936 | 2R | 19672660..19672806 | 165..19 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:16:58 has no hits.
BO16245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:06 Download gff for
BO16245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-PB | 525..1308 | 16..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:53 Download gff for
BO16245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 1028..1814 | 14..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:42 Download gff for
BO16245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 1028..1814 | 14..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:42 Download gff for
BO16245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19672661..19672812 | 14..164 | 98 | | Minus |
2R | 19672294..19672597 | 165..468 | 99 | -> | Minus |
2R | 19671911..19672241 | 469..799 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:53 Download gff for
BO16245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15559416..15559746 | 469..799 | 99 | -> | Minus |
arm_2R | 15559799..15560102 | 165..468 | 99 | -> | Minus |
arm_2R | 15560166..15560317 | 14..164 | 98 | | Minus |
BO16245.5prime Sequence
845 bp (788 high quality bases) assembled on 2006-10-13
> BO16245.5prime
GAAGTTATCAGTCGACATGCAAAAACTGCGCAGTTTGTTTCTCAGGAAAT
CAGCCCATACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGCAGACGAT
GCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCCCCAGCTC
TCGGGTTCTTATCTTCAAAACGGACGTTAATAAGCGCCTAAACGAGCTGA
AGAGTGAGGTGATTCTGGAACTGAGCGACGATCCCGACTCCATCCAGCTA
TTTGCCCCAGATGTGCGGCATCTTAATCCGCGATACCGTCTCTATCGGGC
GGAATACTTCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCCCAGCTAA
AAGTTCGCAACAATGAGACTTTTATACTCTCTCCACGACGCAATACTCTG
CCGCAGACTGTTTCACGGATACGTGAGGTTCCTGGCCCAAATGAGCAGCT
GGTGGAGAGCGCCACCCGATACGTGCCCGTCAATTGCAACCAGCTGCCCA
CCATCGATATTAATGAAATCTTTCAGCAGTCGAATATCCAATACGATGTG
CGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTATAGGAGC
TGGCCCTTATGCTCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCA
ATCGCCGAAATCAGCAAGCGGATACGCTGCAATGCCTCGTGGACATGGGC
TTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAGCACACAATGGCATTTA
CTCGACCACGATGGAGTGGCTAATACAGAACCAAAACGAGGAAAATCCAC
AGGAACCGCCGGGCATGAATATGCAGCACAGTCTATCTTTCATCT
BO16245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11025-PB | 1308 | isopeptidase-T-3-RB | 1..829 | 17..845 | 4070 | 99.6 | Plus |
CG11025-PA | 1674 | isopeptidase-T-3-RA | 396..1195 | 46..845 | 3925 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 105..933 | 17..845 | 4100 | 99.6 | Plus |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 533..1344 | 34..845 | 4015 | 99.6 | Plus |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 533..1332 | 46..845 | 3955 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671359..19671850 | 44..535 | 2430 | 99.6 | Plus |
2R | 25286936 | 2R | 19671906..19672215 | 536..845 | 1535 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:31:18 has no hits.
BO16245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:07 Download gff for
BO16245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-PB | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:25 Download gff for
BO16245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..933 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:42 Download gff for
BO16245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..933 | 17..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:42 Download gff for
BO16245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19671267..19671295 | 17..45 | 100 | -> | Plus |
2R | 19671361..19671850 | 46..535 | 99 | -> | Plus |
2R | 19671906..19672215 | 536..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:25 Download gff for
BO16245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15558772..15558800 | 17..45 | 100 | -> | Plus |
arm_2R | 15558866..15559355 | 46..535 | 99 | -> | Plus |
arm_2R | 15559411..15559720 | 536..845 | 99 | | Plus |
BO16245.complete Sequence
1339 bp assembled on 2006-10-11
GenBank Submission: FJ633749
> BO16245.complete
GAAGTTATCAGTCGACATGCAAAAACTGCGCAGTTTGTTTCTCAGGAAAT
CAGCCCATACAAATCGCCCAGGTAGCTCTACTTCTGGCGAGGCAGACGAT
GCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGGTAATCTGCCCCAGCTC
TCGGGTTCTTATCTTCAAAACGGACGTTAATAAGCGCCTAAACGAGCTGA
AGAGTGAGGTGATTCTGGAACTGAGCGACGATCCCGACTCCATCCAGCTA
TTTGCCCCAGATGTGCGGCATCTTAATCCGCGATACCGTCTCTATCGGGC
GGAATACTTCGGCGGCGAGCTTAACGAGGGCGACACGCTGGCCCAGCTAA
AAGTTCGCAACAATGAGACTTTTATACTCTCTCCACGACGCAATACTCTG
CCGCAGACTGTTTCACGGATACGTGAGGTTCCTGGCCCAAATGAGCAGCT
GGTGGAGAGCGCCACCCGATACGTGCCCGTCAATTGCAACCAGCTGCCCA
CCATCGATATTAATGAAATCTTTCAGCAGTCGAATATCCAATACGATGTG
CGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTGCGGCGGTTATAGGAGC
TGGCCCTTATGCTCCACGCCTGATAGCTATGCTAAAGCAACGTTTGATCA
ATCGCCGAAATCAGCAAGCGGATACGCTGCAATGCCTCGTGGACATGGGC
TTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAGCACACAATGGCATTTA
CTCGACCACGATGGAGTGGCTAATACAGAACCAAAACGAGGAAAATCCAC
AGGAACCGCCGGGCATGAATATGCAGCACAGTCTATCTTCCATCTCACCC
TCCACGATTGTCACCAATAATGAAACCATTGAAAACACTGCTGCCTTGAT
TGAGATTGTACGAATCTACAGCCACCGGGATTCCCCTCCCAGCGATGAGA
TTGTAGAATCGCTTACAGAAATGGGCTTCGAGGAGACGGCAGTGCTTGCG
GCGCTGAAGAAAACTGGCAACAACAAGGCGTCCGCGTGCGAATGGTTGTG
CGACAATCGATCGGGTAGCGTTATTGAACTGCGTGAAGGCTTGGCGCCCG
ATTCGCCCATCCTAAAGGTGATCCTGGAAATGCCACAAGTCCAGATGACC
CTAAGCAATCCAAAGACTTTTTTGGCATTTCTGGGCATCCTGGAAAACGA
ACATGCGATACGCGTGTGGCGTGGCGACAACGACACAACCTCGGTCATCA
CACATATCCTTCAAAAGTACCATGAGGAGAAGCATGTGCTTGGCATCAAT
CAGTTCTATACGAACCGCTGGGCAAGCTTTCTAGACCAT
BO16245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RB | 1308 | CG11025-PB | 1..1305 | 17..1321 | 6450 | 99.6 | Plus |
isopeptidase-T-3-RC | 1686 | CG11025-PC | 396..1683 | 34..1321 | 6365 | 99.6 | Plus |
isopeptidase-T-3-RA | 1674 | CG11025-PA | 396..1671 | 46..1321 | 6305 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 105..1409 | 17..1321 | 6450 | 99.6 | Plus |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 533..1820 | 34..1321 | 6365 | 99.6 | Plus |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 533..1808 | 46..1321 | 6305 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671359..19671850 | 44..535 | 2430 | 99.6 | Plus |
2R | 25286936 | 2R | 19671906..19672242 | 536..872 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 19672294..19672597 | 872..1175 | 1475 | 99 | Plus |
2R | 25286936 | 2R | 19672660..19672806 | 1175..1321 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:52:11 has no hits.
BO16245.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:46 Download gff for
BO16245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 1..1308 | 17..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:58 Download gff for
BO16245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..1415 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:41 Download gff for
BO16245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..1409 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:46 Download gff for
BO16245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..1415 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:52 Download gff for
BO16245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RB | 105..1409 | 17..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:52 Download gff for
BO16245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19672294..19672597 | 872..1175 | 99 | -> | Plus |
2R | 19672661..19672806 | 1176..1323 | 98 | | Plus |
2R | 19671267..19671295 | 17..45 | 100 | -> | Plus |
2R | 19671361..19671850 | 46..535 | 99 | -> | Plus |
2R | 19671906..19672241 | 536..871 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:41 Download gff for
BO16245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15558772..15558800 | 17..45 | 100 | -> | Plus |
arm_2R | 15558866..15559355 | 46..535 | 99 | -> | Plus |
arm_2R | 15559411..15559746 | 536..871 | 100 | -> | Plus |
arm_2R | 15559799..15560102 | 872..1175 | 99 | -> | Plus |
arm_2R | 15560166..15560311 | 1176..1323 | 98 | | Plus |
BO16245.pep Sequence
Translation from 16 to 1339
> BO16245.pep
MQKLRSLFLRKSAHTNRPGSSTSGEADDASRPGESILVRVICPSSRVLIF
KTDVNKRLNELKSEVILELSDDPDSIQLFAPDVRHLNPRYRLYRAEYFGG
ELNEGDTLAQLKVRNNETFILSPRRNTLPQTVSRIREVPGPNEQLVESAT
RYVPVNCNQLPTIDINEIFQQSNIQYDVRKVLISLAQASAAVIGAGPYAP
RLIAMLKQRLINRRNQQADTLQCLVDMGFKRELAAFALKAHNGIYSTTME
WLIQNQNEENPQEPPGMNMQHSLSSISPSTIVTNNETIENTAALIEIVRI
YSHRDSPPSDEIVESLTEMGFEETAVLAALKKTGNNKASACEWLCDNRSG
SVIELREGLAPDSPILKVILEMPQVQMTLSNPKTFLAFLGILENEHAIRV
WRGDNDTTSVITHILQKYHEEKHVLGINQFYTNRWASFLDH
BO16245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-PB | 435 | CG11025-PB | 1..435 | 1..435 | 2228 | 100 | Plus |
isopeptidase-T-3-PC | 561 | CG11025-PC | 128..561 | 2..435 | 2206 | 99.1 | Plus |
isopeptidase-T-3-PA | 557 | CG11025-PA | 133..557 | 11..435 | 2181 | 100 | Plus |