Clone Sequence Records
BO16248.3prime Sequence
906 bp (807 high quality bases) assembled on 2006-10-13
> BO16248.3prime
ATGGTCTAGAAAGCTTGCCATGCCCATTCCGCCCATGCCCATACCGCCGA
GAGCTCCTAATCCGGCTGCCGCTCCAGCAGCGGCGGCCTCCTCCAACGGC
AACTCCGTAACTACAGCCTCGGCAGTGGTCAGAAGAGAGGCGACTCCGGC
TGCGTCCGAGATGGCGGTGCGCACCACCTTGGTGGGATCGATAATACCGC
GTTCGATCATGTTGCCATACTCGCCCTTCAGGGCATCGTAGCCATAGTCA
CCGTCGAGGATCTCCACCTTGGCCACCACCATTGCACCATCTACGCCAGC
ATTCTTGGCAATCGTGAGACAGGGCATGCGCAGCGCACGTCGGATGATCT
CGATGCCCATGTTTTGATCCTCGTTGGCGCCTTTCAAATCGTTCAGTTTC
TGGATGCAACGCAGCAGGGCGGTGCCGCCCCCGGGCACGATTCCCTCCTC
CACGGCAGCACGGGTGGCATTCAGGGCATCGATGACTCGATCCTTCTTCT
CGCTAACCTCCACGTCACTGGAACCGCCCACTCGCAGCAAGGCGACACCG
GAGGAGAGGCGGGCCAAGCGCTCTTGCATCTTCTCCTTCTCGTAGGAGGA
AGTCGACTCCTTGATGGCCTCGCGCAGACCCTCGACCCTTTTCTCCACCT
CTGCCTTCTGTCCCTTGCCCTTGAGCAGCATTGTGTCGTCTTTCGAGACT
ACTACCTCGCCTACACGTCCAAAGTCGCTCATCTTGATATCCTCGAGCCG
TACCATATTGGCTTCGTCTCCAAACACGATTCCACCGGTGGCCACGGCCA
TGTCCATCAGATTCTCCTTGCGATTGTCACCAAAACCGGGTGCCTTCACC
GCGCACACTTGGAGGCCCACCTTTAGGCGGTTCACCACCAGAGTGCTGAG
TGCCTC
BO16248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7235-PA | 1731 | CG7235-RA | 841..1728 | 906..19 | 4440 | 100 | Minus |
| CG7235-PC | 1731 | CG7235-RC | 841..1728 | 906..19 | 4440 | 100 | Minus |
| CG7235-PB | 1731 | CG7235-RB | 841..1728 | 906..19 | 4440 | 100 | Minus |
| CG12101-PA | 1722 | Hsp60-RA | 1255..1331 | 480..404 | 235 | 92.2 | Minus |
| CG12101-PB | 1722 | Hsp60-RB | 1255..1331 | 480..404 | 235 | 92.2 | Minus |
| CG12101-PA | 1722 | Hsp60-RA | 1543..1575 | 192..160 | 165 | 100 | Minus |
| CG12101-PB | 1722 | Hsp60-RB | 1543..1575 | 192..160 | 165 | 100 | Minus |
| CG12101-PA | 1722 | Hsp60-RA | 1420..1474 | 315..261 | 150 | 90.9 | Minus |
| CG12101-PB | 1722 | Hsp60-RB | 1420..1474 | 315..261 | 150 | 90.9 | Minus |
| CG2830-PA | 1947 | Hsp60B-RA | 1537..1603 | 195..129 | 135 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60C-RB | 2029 | CG7235-RB | 980..1867 | 906..19 | 4440 | 100 | Minus |
| Hsp60C-RC | 2093 | CG7235-RC | 1044..1931 | 906..19 | 4440 | 100 | Minus |
| Hsp60C-RA | 2162 | CG7235-RA | 1113..2000 | 906..19 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5669789..5670676 | 906..19 | 4440 | 100 | Minus |
| X | 23542271 | X | 11111499..11111735 | 339..103 | 615 | 84 | Minus |
| X | 23542271 | X | 11110869..11111371 | 906..404 | 610 | 74.8 | Minus |
| 2L | 23513712 | 2L | 730044..730122 | 195..117 | 230 | 86.1 | Minus |
Blast to na_te.dros performed on 2015-02-02 16:02:02 has no hits.
BO16248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:14 Download gff for
BO16248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7235-PB | 841..1731 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:26:44 Download gff for
BO16248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RA | 1113..2008 | 10..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:57:48 Download gff for
BO16248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RA | 1113..2008 | 10..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 18:57:48 Download gff for
BO16248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5669789..5670684 | 10..906 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:26:44 Download gff for
BO16248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5669789..5670684 | 10..906 | 99 | | Minus |
BO16248.5prime Sequence
872 bp (757 high quality bases) assembled on 2006-10-13
> BO16248.5prime
GAAGTTATCAGTCGACATGATGCGCATGTTCCGTTACACCAACACATTGC
AGCGTACTGCAAAGATCAGTCACGTCCTGTGGGCCCGTAACTATGCAAAG
GATGTTAGGTTCGGGCCGGAGGTGAGGGCCATGATGCTGCAGGGAGTGGA
CGTGCTGGCGGATGCCGTGGCCGTGACCATGGGACCAAAGGGACGCAACG
TGATCATCGAGCAGAGCTGGGGATCGCCAAAGATTACCAAGGACGGCGTG
ACGGTGGCCAAGTCGATTGCCCTCAAGGACAAGTTCCAGAATATCGGCGC
CAAACTGGTGCAGGATGTGGCGAACAACACGAACGAGGAGGCAGGTGATG
GCACCACCACGGCCACCGTTCTGGCCCGCGCCATTGCCAAGGAGGGATTC
GAGAAGATTTCACGGGGTGCCAGTCCGGTGGAGATCCGCCGCGGAGTTAT
GCTAGCCATCGAGACGGTCAAGGACAACCTTCGTCGGTTGTCCCGGCCAG
TTAACACGCCCGAGGAGATCTGCCAGGTGGCGACGATCTCTGCGAACGGC
GACAAGTCGGTGGGAAACCTCATCAGCGAGGCCATCAAGAAGGTGGGTCG
AGACGGCGTTATCACTGTCAAGGATGGCAAGACCCTTTGCGACGAACTGG
AGGTGATCGAGGGCATGAAATTTGACCGTGGTTACATTTCGCCTTACTTT
ATTAACACCTCCAAGGGAGCAAAGGTGGAGTTCCAGGACGCGCTTCTCCT
CTTTTGCGAGAAGAAAATCAAGTCGGCACCTAGCATCGTGCCTGCCCTGN
AGTTGGCCAACGCTCAGCGCAAGCCCTTGGTCATTATCGCTGAAGACTTG
GAAGCGGAGGCACTCAGCACTC
BO16248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7235-PA | 1731 | CG7235-RA | 1..856 | 17..872 | 4211 | 99.6 | Plus |
| CG7235-PC | 1731 | CG7235-RC | 1..856 | 17..872 | 4211 | 99.6 | Plus |
| CG7235-PB | 1731 | CG7235-RB | 1..856 | 17..872 | 4211 | 99.6 | Plus |
| CG12101-PA | 1722 | Hsp60-RA | 208..380 | 236..408 | 465 | 90.7 | Plus |
| CG12101-PB | 1722 | Hsp60-RB | 208..380 | 236..408 | 465 | 90.7 | Plus |
| CG12101-PA | 1722 | Hsp60-RA | 541..608 | 569..636 | 215 | 92.6 | Plus |
| CG12101-PB | 1722 | Hsp60-RB | 541..608 | 569..636 | 215 | 92.6 | Plus |
| CG12101-PA | 1722 | Hsp60-RA | 100..186 | 128..214 | 135 | 86.2 | Plus |
| CG12101-PB | 1722 | Hsp60-RB | 100..186 | 128..214 | 135 | 86.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60C-RC | 2093 | CG7235-RC | 193..1059 | 6..872 | 4279 | 99.5 | Plus |
| Hsp60C-RA | 2162 | CG7235-RA | 262..1128 | 6..872 | 4279 | 99.5 | Plus |
| Hsp60C-RB | 2029 | CG7235-RB | 134..995 | 11..872 | 4254 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5668943..5669804 | 11..872 | 4254 | 99.5 | Plus |
| X | 23542271 | X | 11110103..11110846 | 91..834 | 1684 | 81.7 | Plus |
| 2L | 23513712 | 2L | 728599..728929 | 126..456 | 425 | 75.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:37:24 has no hits.
BO16248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:15 Download gff for
BO16248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7235-PB | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:54:37 Download gff for
BO16248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RA | 257..1128 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:41 Download gff for
BO16248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RA | 257..1128 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:41 Download gff for
BO16248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5668943..5669804 | 11..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:54:37 Download gff for
BO16248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5668943..5669804 | 11..872 | 99 | | Plus |
BO16248.complete Sequence
1762 bp assembled on 2008-08-14
GenBank Submission: FJ633750
> BO16248.complete
GAAGTTATCAGTCGACATGATGCGCATGTTCCGTTACACCAACACATTGC
AGCGTACTGCAAAGATCAGTCACGTCCTGTGGGCCCGTAACTATGCAAAG
GATGTTAGGTTCGGGCCGGAGGTGAGGGCCATGATGCTGCAGGGAGTGGA
CGTGCTGGCGGATGCCGTGGCCGTGACCATGGGACCAAAGGGACGCAACG
TGATCATCGAGCAGAGCTGGGGATCGCCAAAGATTACCAAGGACGGCGTG
ACGGTGGCCAAGTCGATTGCCCTCAAGGACAAGTTCCAGAATATCGGCGC
CAAACTGGTGCAGGATGTGGCGAACAACACGAACGAGGAGGCAGGTGATG
GCACCACCACGGCCACCGTTCTGGCCCGCGCCATTGCCAAGGAGGGATTC
GAGAAGATTTCACGGGGTGCCAGTCCGGTGGAGATCCGCCGCGGAGTTAT
GCTAGCCATCGAGACGGTCAAGGACAACCTTCGTCGGTTGTCCCGGCCAG
TTAACACGCCCGAGGAGATCTGCCAGGTGGCGACGATCTCTGCGAACGGC
GACAAGTCGGTGGGAAACCTCATCAGCGAGGCCATCAAGAAGGTGGGTCG
AGACGGCGTTATCACTGTCAAGGATGGCAAGACCCTTTGCGACGAACTGG
AGGTGATCGAGGGCATGAAATTTGACCGTGGTTACATTTCGCCTTACTTT
ATTAACACCTCCAAGGGAGCAAAGGTGGAGTTCCAGGACGCGCTTCTCCT
CTTTTGCGAGAAGAAAATCAAGTCGGCACCTAGCATCGTGCCTGCCCTGG
AGTTGGCCAACGCTCAGCGCAAGCCCTTGGTCATTATCGCTGAGGACTTG
GAGGCGGAGGCACTCAGCACTCTGGTGGTGAACCGCCTAAAGGTGGGCCT
CCAAGTGTGCGCGGTGAAGGCACCCGGTTTTGGTGACAATCGCAAGGAGA
ATCTGATGGACATGGCCGTGGCCACCGGTGGAATCGTGTTTGGAGACGAA
GCCAATATGGTACGGCTCGAGGATATCAAGATGAGCGACTTTGGACGTGT
AGGCGAGGTAGTAGTCTCGAAAGACGACACAATGCTGCTCAAGGGCAAGG
GACAGAAGGCAGAGGTGGAGAAAAGGGTCGAGGGTCTGCGCGAGGCCATC
AAGGAGTCGACTTCCTCCTACGAGAAGGAGAAGATGCAAGAGCGCTTGGC
CCGCCTCTCCTCCGGTGTCGCCTTGCTGCGAGTGGGCGGTTCCAGTGACG
TGGAGGTTAGCGAGAAGAAGGATCGAGTCATCGATGCCCTGAATGCCACC
CGTGCTGCCGTGGAGGAGGGAATCGTGCCCGGGGGCGGCACCGCCCTGCT
GCGTTGCATCCAGAAACTGAACGATTTGAAAGGCGCCAACGAGGATCAAA
ACATGGGCATCGAGATCATCCGACGTGCGCTGCGCATGCCCTGTCTCACG
ATTGCCAAGAATGCTGGCGTAGATGGTGCAATGGTGGTGGCCAAGGTGGA
GATCCTCGACGGTGACTATGGCTACGATGCCCTGAAGGGCGAGTATGGCA
ACATGATCGAACGCGGTATTATCGATCCCACCAAGGTGGTGCGCACCGCC
ATCTCGGACGCAGCCGGAGTCGCCTCTCTTCTGACCACTGCCGAGGCTGT
AGTTACGGAGTTGCCGTTGGAGGAGGCCGCCGCTGCTGGAGCGGCAGCCG
GATTAGGAGCTCTCGGCGGTATGGGCATGGGCGGAATGGGCATGGCAAGC
TTTCTAGACCAT
BO16248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60C-RB | 1731 | CG7235-PB | 1..1728 | 17..1744 | 8640 | 100 | Plus |
| Hsp60C-RC | 1731 | CG7235-PC | 1..1728 | 17..1744 | 8640 | 100 | Plus |
| Hsp60C-RA | 1731 | CG7235-PA | 1..1728 | 17..1744 | 8640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60C-RC | 2093 | CG7235-RC | 193..1931 | 6..1744 | 8680 | 99.9 | Plus |
| Hsp60C-RA | 2162 | CG7235-RA | 262..2000 | 6..1744 | 8680 | 99.9 | Plus |
| Hsp60C-RB | 2029 | CG7235-RB | 134..1867 | 11..1744 | 8655 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5668943..5670676 | 11..1744 | 8655 | 99.9 | Plus |
| X | 23542271 | X | 11110103..11111371 | 91..1359 | 2280 | 78.6 | Plus |
| X | 23542271 | X | 11111499..11111735 | 1424..1660 | 615 | 84 | Plus |
| 2L | 23513712 | 2L | 728599..728929 | 126..456 | 425 | 75.2 | Plus |
| 2L | 23513712 | 2L | 730044..730122 | 1568..1646 | 230 | 86.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:36:01 has no hits.
BO16248.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:37 Download gff for
BO16248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RC | 188..1939 | 1..1753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:02 Download gff for
BO16248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RA | 273..2000 | 17..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:58 Download gff for
BO16248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RC | 204..1931 | 17..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:15 Download gff for
BO16248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RA | 273..2000 | 17..1746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:15 Download gff for
BO16248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5668949..5670676 | 17..1746 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:02 Download gff for
BO16248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5668949..5670676 | 17..1746 | 99 | | Plus |
BO16248.pep Sequence
Translation from 16 to 1762
> BO16248.pep
MMRMFRYTNTLQRTAKISHVLWARNYAKDVRFGPEVRAMMLQGVDVLADA
VAVTMGPKGRNVIIEQSWGSPKITKDGVTVAKSIALKDKFQNIGAKLVQD
VANNTNEEAGDGTTTATVLARAIAKEGFEKISRGASPVEIRRGVMLAIET
VKDNLRRLSRPVNTPEEICQVATISANGDKSVGNLISEAIKKVGRDGVIT
VKDGKTLCDELEVIEGMKFDRGYISPYFINTSKGAKVEFQDALLLFCEKK
IKSAPSIVPALELANAQRKPLVIIAEDLEAEALSTLVVNRLKVGLQVCAV
KAPGFGDNRKENLMDMAVATGGIVFGDEANMVRLEDIKMSDFGRVGEVVV
SKDDTMLLKGKGQKAEVEKRVEGLREAIKESTSSYEKEKMQERLARLSSG
VALLRVGGSSDVEVSEKKDRVIDALNATRAAVEEGIVPGGGTALLRCIQK
LNDLKGANEDQNMGIEIIRRALRMPCLTIAKNAGVDGAMVVAKVEILDGD
YGYDALKGEYGNMIERGIIDPTKVVRTAISDAAGVASLLTTAEAVVTELP
LEEAAAAGAAAGLGALGGMGMGGMGMASFLDH
BO16248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60C-PB | 576 | CG7235-PB | 1..576 | 1..576 | 2856 | 100 | Plus |
| Hsp60C-PC | 576 | CG7235-PC | 1..576 | 1..576 | 2856 | 100 | Plus |
| Hsp60C-PA | 576 | CG7235-PA | 1..576 | 1..576 | 2856 | 100 | Plus |
| Hsp60-PB | 573 | CG12101-PB | 1..570 | 4..575 | 2325 | 81.2 | Plus |
| Hsp60-PA | 573 | CG12101-PA | 1..570 | 4..575 | 2325 | 81.2 | Plus |
