Clone Sequence Records
BO16250.3prime Sequence
711 bp (711 high quality bases) assembled on 2006-10-13
> BO16250.3prime
ATGGTCTAGAAAGCTTGCGTAACTCGTACGGCCAAAGATCATGTTGTGCC
GGAACTCCGCCCAGCGGGTGCGATGGCTGCGGTAGGAGTTGTATGGCGAG
ATGACCTTTCGGGAAATGGAGGCGCTATCGGGCAAACGTTCCGTTTGCTT
GGAGGCGCTGGCCACGCGTTGGAGAAGCTCCTGCTCAGCCCGGGCGCGAT
CCATCTCCTCCTCCGAGTTGTCCTCCGGCGGTCCGAAAACGGTCTCCCGT
ACCGATCGAACCTCCAGATCCGACTCGTAGTCGTGCTCCTCGGCCTTGGC
TTCTGGATCGCCGTCCAGTCTTTGCTCTTCCTCCTGCCTCTGCTGGTATT
GGGACACCTGCGCCGACTTGAAGTTCCGCCTCCTGGCCGCGTTCTGGGCG
GCCACCACATTGTTGCGGCGGGGCACCATCTCATCCGGTTTGGCAACTGG
TCGGAACATGGCGGAGTCCAGGCCGGAGTAGTTGTTGCTCCACCGGCGGT
TCTGCTGCCTCTGGCGGAGCAGCTGGGCTGCCGCAAAAGACTCCTCTCTC
ATGGGCCAGTCCTTGTGGCAGGGATTTACGTTTTGGGCTGCGCTGTTTTG
ACCTTTCTCTAGGCCCGATATCCAGCGCCGCCCCTCAATTAGACTCCGCT
TGGCCAGGTGGCGAATGCATGGCAGGTTTTTCACGAATATTTGGCATGTC
GACTGATAACT
BO16250.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30376-PA | 681 | CG30376-RA | 6..678 | 691..19 | 3365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30376-RA | 941 | CG30376-RA | 134..811 | 697..19 | 3370 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8263616..8264288 | 19..691 | 3365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:06:11 has no hits.
BO16250.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:16 Download gff for
BO16250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-PA | 1..681 | 16..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:02 Download gff for
BO16250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-RA | 134..816 | 13..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:05 Download gff for
BO16250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-RA | 134..816 | 13..697 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:05 Download gff for
BO16250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8263611..8264293 | 13..697 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:02 Download gff for
BO16250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4151116..4151798 | 13..697 | 99 | | Plus |
BO16250.5prime Sequence
710 bp (710 high quality bases) assembled on 2006-10-13
> BO16250.5prime
GAAGTTATCAGTCGACATGCCAATATTCGTGAAAAACCTGCCATGCATTC
GCCACCTGGCCAAGCGGAGTCTAATTGAGGGGCGGCGCTGGATATCGGGC
CTAGAGAAAGGTCAAAACAGCGCAGCCCAAAACGTAAATCCCTGCCACAA
GGACTGGCCCATGAGAGAGGAGTCTTTTGCGGCAGCCCAGCTGCTCCGCC
AGAGGCAGCAGAACCGCCGGTGGAGCAACAACTACTCCGGCCTGGACTCC
GCCATGTTCCGACCAGTTGCCAAACCGGATGAGATGGTGCCCCGCCGCAA
CAATGTGGTGGCCGCCCAGAACGCGGCCAGGAGGCGGAACTTCAAGTCGG
CGCAGGTGTCCCAATACCAGCAGAGGCAGGAGGAAGAGCAAAGACTGGAC
GGCGATCCAGAAGCCAAGGCCGAGGAGCACGACTACGAGTCGGATCTGGA
GGTTCGATCGGTACGGGAGACCGTTTTCGGACCGCCGGAGGACAACTCGG
AGGAGGAGATGGATCGCGCCCGGGCTGAGCAGGAGCTTCTCCAACGCGTG
GCCAGCGCCTCCAAGCAAACGGAACGTTTGCCCGATAGCGCCTCCATTTC
CCGAAAGGTCATCTCGCCATACAACTCCTACCGCAGCCATCGCACCCGCT
GGGCGGAGTTCCGGCACAACATGATCTTTGGCCGTACGAGTTACGCAAGC
TTTCTAGACC
BO16250.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30376-PA | 681 | CG30376-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30376-RA | 941 | CG30376-RA | 134..811 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8263616..8264293 | 694..17 | 3390 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:58:36 has no hits.
BO16250.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:17 Download gff for
BO16250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-PA | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:35 Download gff for
BO16250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-RA | 134..816 | 17..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:05 Download gff for
BO16250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-RA | 134..816 | 17..700 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:05 Download gff for
BO16250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8263611..8264293 | 17..700 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:35 Download gff for
BO16250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4151116..4151798 | 17..700 | 99 | | Minus |
BO16250.complete Sequence
712 bp assembled on 2006-10-11
GenBank Submission: FJ633751
> BO16250.complete
GAAGTTATCAGTCGACATGCCAATATTCGTGAAAAACCTGCCATGCATTC
GCCACCTGGCCAAGCGGAGTCTAATTGAGGGGCGGCGCTGGATATCGGGC
CTAGAGAAAGGTCAAAACAGCGCAGCCCAAAACGTAAATCCCTGCCACAA
GGACTGGCCCATGAGAGAGGAGTCTTTTGCGGCAGCCCAGCTGCTCCGCC
AGAGGCAGCAGAACCGCCGGTGGAGCAACAACTACTCCGGCCTGGACTCC
GCCATGTTCCGACCAGTTGCCAAACCGGATGAGATGGTGCCCCGCCGCAA
CAATGTGGTGGCCGCCCAGAACGCGGCCAGGAGGCGGAACTTCAAGTCGG
CGCAGGTGTCCCAATACCAGCAGAGGCAGGAGGAAGAGCAAAGACTGGAC
GGCGATCCAGAAGCCAAGGCCGAGGAGCACGACTACGAGTCGGATCTGGA
GGTTCGATCGGTACGGGAGACCGTTTTCGGACCGCCGGAGGACAACTCGG
AGGAGGAGATGGATCGCGCCCGGGCTGAGCAGGAGCTTCTCCAACGCGTG
GCCAGCGCCTCCAAGCAAACGGAACGTTTGCCCGATAGCGCCTCCATTTC
CCGAAAGGTCATCTCGCCATACAACTCCTACCGCAGCCATCGCACCCGCT
GGGCGGAGTTCCGGCACAACATGATCTTTGGCCGTACGAGTTACGCAAGC
TTTCTAGACCAT
BO16250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30376-RA | 681 | CG30376-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30376-RA | 941 | CG30376-RA | 134..811 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8263616..8264293 | 694..17 | 3390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:03:02 has no hits.
BO16250.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:49 Download gff for
BO16250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-RA | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:00 Download gff for
BO16250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-RA | 134..814 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:47 Download gff for
BO16250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-RA | 134..811 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:49 Download gff for
BO16250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-RA | 134..814 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:19 Download gff for
BO16250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30376-RA | 134..811 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:19 Download gff for
BO16250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8263613..8264293 | 17..696 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:47 Download gff for
BO16250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4151118..4151798 | 17..696 | 99 | | Minus |
BO16250.pep Sequence
Translation from 16 to 712
> BO16250.pep
MPIFVKNLPCIRHLAKRSLIEGRRWISGLEKGQNSAAQNVNPCHKDWPMR
EESFAAAQLLRQRQQNRRWSNNYSGLDSAMFRPVAKPDEMVPRRNNVVAA
QNAARRRNFKSAQVSQYQQRQEEEQRLDGDPEAKAEEHDYESDLEVRSVR
ETVFGPPEDNSEEEMDRARAEQELLQRVASASKQTERLPDSASISRKVIS
PYNSYRSHRTRWAEFRHNMIFGRTSYASFLDH
BO16250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30376-PA | 226 | CG30376-PA | 1..226 | 1..226 | 1178 | 100 | Plus |
