Clone Sequence Records
BO16251.5prime Sequence
359 bp (359 high quality bases) assembled on 2006-10-13
> BO16251.5prime
GAAGTTATCAGTCGACATGATCAATATTCTTAGGACACTGTCAGGCAGAG
GTCTTCAACTCACCAGGAGACTTCATCGACGACCCCAGATCTGCCAGAAG
CCCGGAGTCTTTGTCCATCCGGAGCTGCGTCGCACTATTCCCCTCGTTTA
CTTCAGCAAAGGGGAACTGCCACCTAAACCGAATCAAGAAGTCTCATCCA
ACCGGCAGTGCGAAATATCTCCTTCGGAGAAGAATCGAAAAAGCACGGAG
GCCTTTGATCAGTTTTGTAAAAGACAACGGCAATGCTTTTCCAGCACCTA
CCAGTGGGCAGAGTTCCGGCGAAAGATGATCTATGGCAGTTACGCAAGCT
TTCTAGACC
BO16251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12126-PA | 330 | CG12126-RA | 1..327 | 17..343 | 1610 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:07:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12126-RA | 605 | CG12126-RA | 79..406 | 16..343 | 1625 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8262873..8263200 | 343..16 | 1625 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:07:52 has no hits.
BO16251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:18 Download gff for
BO16251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-PA | 1..330 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:01 Download gff for
BO16251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-RA | 76..406 | 10..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:47 Download gff for
BO16251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-RA | 76..406 | 10..343 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:47 Download gff for
BO16251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8262873..8263203 | 10..343 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:01 Download gff for
BO16251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4150378..4150708 | 10..343 | 98 | | Minus |
BO16251.3prime Sequence
359 bp (359 high quality bases) assembled on 2006-10-13
> BO16251.3prime
ATGGTCTAGAAAGCTTGCGTAACTGCCATAGATCATCTTTCGCCGGAACT
CTGCCCACTGGTAGGTGCTGGAAAAGCATTGCCGTTGTCTTTTACAAAAC
TGATCAAAGGCCTCCGTGCTTTTTCGATTCTTCTCCGAAGGAGATATTTC
GCACTGCCGGTTGGATGAGACTTCTTGATTCGGTTTAGGTGGCAGTTCCC
CTTTGCTGAAGTAAACGAGGGGAATAGTGCGACGCAGCTCCGGATGGACA
AAGACTCCGGGCTTCTGGCAGATCTGGGGTCGTCGATGAAGTCTCCTGGT
GAGTTGAAGACCTCTGCCTGACAGTGTCCTAAGAATATTGATCATGTCGA
CTGATAACT
BO16251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12126-PA | 330 | CG12126-RA | 1..327 | 345..19 | 1610 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12126-RA | 605 | CG12126-RA | 79..406 | 346..19 | 1625 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8262873..8263200 | 19..346 | 1625 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:06:25 has no hits.
BO16251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:18 Download gff for
BO16251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-PA | 1..330 | 18..345 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:05 Download gff for
BO16251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-RA | 76..406 | 19..352 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:07 Download gff for
BO16251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-RA | 76..406 | 19..352 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:07 Download gff for
BO16251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8262873..8263203 | 19..352 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:05 Download gff for
BO16251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4150378..4150708 | 19..352 | 98 | | Plus |
BO16251.complete Sequence
361 bp assembled on 2006-10-11
GenBank Submission: FJ633752
> BO16251.complete
GAAGTTATCAGTCGACATGATCAATATTCTTAGGACACTGTCAGGCAGAG
GTCTTCAACTCACCAGGAGACTTCATCGACGACCCCAGATCTGCCAGAAG
CCCGGAGTCTTTGTCCATCCGGAGCTGCGTCGCACTATTCCCCTCGTTTA
CTTCAGCAAAGGGGAACTGCCACCTAAACCGAATCAAGAAGTCTCATCCA
ACCGGCAGTGCGAAATATCTCCTTCGGAGAAGAATCGAAAAAGCACGGAG
GCCTTTGATCAGTTTTGTAAAAGACAACGGCAATGCTTTTCCAGCACCTA
CCAGTGGGCAGAGTTCCGGCGAAAGATGATCTATGGCAGTTACGCAAGCT
TTCTAGACCAT
BO16251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12126-RA | 330 | CG12126-PA | 1..327 | 17..343 | 1620 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12126-RA | 605 | CG12126-RA | 79..406 | 16..343 | 1625 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8262873..8263200 | 343..16 | 1625 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:49:40 has no hits.
BO16251.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:51 Download gff for
BO16251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-RA | 1..330 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:02 Download gff for
BO16251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-RA | 76..406 | 10..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:39 Download gff for
BO16251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-RA | 80..406 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:51 Download gff for
BO16251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-RA | 76..406 | 10..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:28 Download gff for
BO16251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12126-RA | 80..406 | 17..345 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:28 Download gff for
BO16251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8262871..8263199 | 17..345 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:39 Download gff for
BO16251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4150376..4150704 | 17..345 | 99 | | Minus |
BO16251.pep Sequence
Translation from 16 to 361
> BO16251.pep
MINILRTLSGRGLQLTRRLHRRPQICQKPGVFVHPELRRTIPLVYFSKGE
LPPKPNQEVSSNRQCEISPSEKNRKSTEAFDQFCKRQRQCFSSTYQWAEF
RRKMIYGSYASFLDH
BO16251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12126-PA | 109 | CG12126-PA | 1..109 | 1..109 | 583 | 100 | Plus |
