Clone Sequence Records
BO16253.3prime Sequence
910 bp (849 high quality bases) assembled on 2006-10-13
> BO16253.3prime
ATGGTCTAGAAAGCTTGCTCTAGTGGAGTGTTTGCTTGTGGGCGCCTTTT
CTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGAA
TCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTGC
CAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCCT
CGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCATT
GCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGCC
CACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCTA
TGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATCT
TCGCGTGATACGGAAACCCGTTTGTCGTTGAGGTGCATCTGGCCAAAGCT
TGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCAT
AAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGCC
AGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACAG
GCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAGT
TGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCACC
AGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTTT
TAGAATGTCACGTGCGTTTTCGTAGTAGTAGCACTCCGTGCGATTATGCA
GATCGGCGAAAAGAATGCCTTTGATGAGCGTGTCCAGCTCGTCGAATTTA
GCCAGCTTCATGTTGACTTGGTCGCGGAAATCCTGCTCGAACTTGAATGC
GCCACCGCCG
BO16253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5725-PD | 1206 | fbl-RD | 312..1203 | 910..19 | 4410 | 99.7 | Minus |
CG5725-PB | 1254 | fbl-RB | 360..1251 | 910..19 | 4410 | 99.7 | Minus |
CG5725-PA | 1260 | fbl-RA | 366..1257 | 910..19 | 4410 | 99.7 | Minus |
CG5725-PC | 1206 | fbl-RC | 312..1203 | 910..19 | 4410 | 99.7 | Minus |
CG5725-PE | 1539 | fbl-RE | 645..1536 | 910..19 | 4410 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 2352 | CG5725-RG | 727..1618 | 910..19 | 4430 | 99.8 | Minus |
fbl-RF | 1370 | CG5725-RF | 204..1095 | 910..19 | 4430 | 99.8 | Minus |
fbl-RE | 2386 | CG5725-RE | 761..1652 | 910..19 | 4430 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20390885..20391179 | 313..19 | 1475 | 100 | Minus |
3L | 28110227 | 3L | 20390456..20390634 | 627..449 | 895 | 100 | Minus |
3L | 28110227 | 3L | 20390050..20390208 | 910..752 | 780 | 99.4 | Minus |
3L | 28110227 | 3L | 20390688..20390827 | 450..311 | 685 | 99.3 | Minus |
3L | 28110227 | 3L | 20390268..20390393 | 751..626 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:40:05 has no hits.
BO16253.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:22 Download gff for
BO16253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PE | 645..1539 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:24 Download gff for
BO16253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 761..1652 | 19..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:09 Download gff for
BO16253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 761..1652 | 19..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:09 Download gff for
BO16253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20390050..20390208 | 752..910 | 99 | -> | Minus |
3L | 20390268..20390393 | 626..751 | 100 | -> | Minus |
3L | 20390458..20390634 | 449..625 | 100 | -> | Minus |
3L | 20390690..20390825 | 313..448 | 99 | -> | Minus |
3L | 20390886..20391179 | 19..312 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:24 Download gff for
BO16253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20383150..20383308 | 752..910 | 99 | -> | Minus |
arm_3L | 20383368..20383493 | 626..751 | 100 | -> | Minus |
arm_3L | 20383558..20383734 | 449..625 | 100 | -> | Minus |
arm_3L | 20383790..20383925 | 313..448 | 99 | -> | Minus |
arm_3L | 20383986..20384279 | 19..312 | 100 | | Minus |
BO16253.5prime Sequence
833 bp (829 high quality bases) assembled on 2006-10-13
> BO16253.5prime
GAAGTTATCAGTCGACATGCCATGGTTTGGCATGGACATCGGCGGAACCC
TCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAG
GATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAA
CTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACA
ATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAG
ACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGC
CGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCG
AGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAG
CTGGACACGCTCATCAAAGGCATTCTTTTCGCCGATCTGCATAATCGCAC
GGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGC
AGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGA
TCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGAT
TTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTAC
TCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGT
GACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTA
CAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGA
TGCACCTCAACGACAAACGGGTTTCCGTATCAC
BO16253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5725-PD | 1206 | fbl-RD | 1..817 | 17..833 | 4035 | 99.7 | Plus |
CG5725-PB | 1254 | fbl-RB | 49..865 | 17..833 | 4035 | 99.7 | Plus |
CG5725-PA | 1260 | fbl-RA | 55..871 | 17..833 | 4035 | 99.7 | Plus |
CG5725-PC | 1206 | fbl-RC | 1..817 | 17..833 | 4035 | 99.7 | Plus |
CG5725-PE | 1539 | fbl-RE | 334..1150 | 17..833 | 4035 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 2352 | CG5725-RG | 416..1232 | 17..833 | 4055 | 99.8 | Plus |
fbl-RE | 2386 | CG5725-RE | 450..1266 | 17..833 | 4055 | 99.8 | Plus |
fbl-RC | 2093 | CG5725-RC | 157..973 | 17..833 | 4055 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20389913..20390208 | 191..486 | 1465 | 99.7 | Plus |
3L | 28110227 | 3L | 20390456..20390634 | 611..789 | 895 | 100 | Plus |
3L | 28110227 | 3L | 20388671..20388847 | 17..193 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20390268..20390393 | 487..612 | 630 | 100 | Plus |
3L | 28110227 | 3L | 20390688..20390733 | 788..833 | 215 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:57:47 has no hits.
BO16253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:22 Download gff for
BO16253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PE | 326..1150 | 5..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:44 Download gff for
BO16253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RC | 155..973 | 13..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:06:07 Download gff for
BO16253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RC | 155..973 | 13..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:06:07 Download gff for
BO16253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20388663..20388847 | 5..193 | 97 | -> | Plus |
3L | 20389916..20390208 | 194..486 | 99 | -> | Plus |
3L | 20390268..20390393 | 487..612 | 100 | -> | Plus |
3L | 20390458..20390634 | 613..789 | 100 | -> | Plus |
3L | 20390690..20390733 | 790..833 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:44 Download gff for
BO16253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20383368..20383493 | 487..612 | 100 | -> | Plus |
arm_3L | 20381763..20381947 | 5..193 | 97 | -> | Plus |
arm_3L | 20383016..20383308 | 194..486 | 99 | -> | Plus |
arm_3L | 20383558..20383734 | 613..789 | 100 | -> | Plus |
arm_3L | 20383790..20383833 | 790..833 | 97 | | Plus |
BO16253.complete Sequence
1237 bp assembled on 2006-10-11
GenBank Submission: FJ633753
> BO16253.complete
GAAGTTATCAGTCGACATGCCATGGTTTGGCATGGACATCGGCGGAACCC
TCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAG
GATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAA
CTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACA
ATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAG
ACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGC
CGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCG
AGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAG
CTGGACACGCTCATCAAAGGCATTCTTTTCGCCGATCTGCATAATCGCAC
GGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGC
AGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGA
TCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGAT
TTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTAC
TCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGT
GACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTA
CAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGA
TGCACCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAAC
GCCACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGATGTG
CGCGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTTCTGC
GAGTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTTCTGG
TCCAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACTTTGG
GGCTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCCCTTA
ACGACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAGCGAA
GCAGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGCCCAC
AAGCAAACACTCCACTAGAGCAAGCTTTCTAGACCAT
BO16253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 1287 | CG5725-PG | 82..1284 | 17..1219 | 5985 | 99.8 | Plus |
fbl-RE | 1539 | CG5725-PE | 334..1536 | 17..1219 | 5985 | 99.8 | Plus |
fbl-RC | 1206 | CG5725-PC | 1..1203 | 17..1219 | 5985 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 2352 | CG5725-RG | 416..1618 | 17..1219 | 5985 | 99.8 | Plus |
fbl-RE | 2386 | CG5725-RE | 450..1652 | 17..1219 | 5985 | 99.8 | Plus |
fbl-RC | 2093 | CG5725-RC | 157..1359 | 17..1219 | 5985 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20390885..20391179 | 925..1219 | 1475 | 100 | Plus |
3L | 28110227 | 3L | 20389913..20390208 | 191..486 | 1465 | 99.7 | Plus |
3L | 28110227 | 3L | 20390456..20390634 | 611..789 | 895 | 100 | Plus |
3L | 28110227 | 3L | 20388671..20388847 | 17..193 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20390688..20390827 | 788..927 | 685 | 99.3 | Plus |
3L | 28110227 | 3L | 20390268..20390393 | 487..612 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:11:02 has no hits.
BO16253.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:23 Download gff for
BO16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 49..1260 | 10..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:39 Download gff for
BO16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 383..1591 | 10..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:23 Download gff for
BO16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RC | 157..1359 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:23 Download gff for
BO16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 383..1591 | 10..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:13 Download gff for
BO16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RC | 157..1359 | 17..1221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:13 Download gff for
BO16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20389916..20390208 | 194..486 | 99 | -> | Plus |
3L | 20390268..20390393 | 487..612 | 100 | -> | Plus |
3L | 20390458..20390634 | 613..789 | 100 | -> | Plus |
3L | 20390690..20390825 | 790..925 | 99 | -> | Plus |
3L | 20388671..20388847 | 17..193 | 100 | -> | Plus |
3L | 20390886..20391179 | 926..1221 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:23 Download gff for
BO16253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20381771..20381947 | 17..193 | 100 | -> | Plus |
arm_3L | 20383016..20383308 | 194..486 | 99 | -> | Plus |
arm_3L | 20383368..20383493 | 487..612 | 100 | -> | Plus |
arm_3L | 20383558..20383734 | 613..789 | 100 | -> | Plus |
arm_3L | 20383790..20383925 | 790..925 | 99 | -> | Plus |
arm_3L | 20383986..20384279 | 926..1221 | 99 | | Plus |
BO16253.pep Sequence
Translation from 16 to 1237
> BO16253.pep
MPWFGMDIGGTLTKLVYFEPKDITPDEQDREAGILRNIRRYLTKNSAYGK
TGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDMGNFLSLAKQKGMAELVTT
VCATGGGAFKFEQDFRDQVNMKLAKFDELDTLIKGILFADLHNRTECYYY
ENARDILKSEKQQFNFSQPFPFILVNVGSGVSILAVYGPDNYKRISGTSL
GGGTFLGLCCLLTGCTSFEEAIQLATKGDNRKVDKLVKDIYGGDYNRFGL
PGDLVASSFGQMHLNDKRVSVSREDLANATLVTITNNIGSIARMCALNEK
IDRVVFVGNFLRVNPISMKLLAYAMEFWSNGTMKGLFLEHEGYFGALGCL
LQFNGELAAALNDGVEHSIHTESDSASEAAQTSSTADEPPEKAPTSKHST
RASFLDH
BO16253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-PC | 401 | CG5725-PC | 1..401 | 1..401 | 2093 | 100 | Plus |
fbl-PD | 401 | CG5725-PD | 1..401 | 1..401 | 2093 | 100 | Plus |
fbl-PB | 417 | CG5725-PB | 17..417 | 1..401 | 2093 | 100 | Plus |
fbl-PA | 419 | CG5725-PA | 19..419 | 1..401 | 2093 | 100 | Plus |
fbl-PG | 428 | CG5725-PG | 28..428 | 1..401 | 2093 | 100 | Plus |