Clone BO16253 Report

Search the DGRC for BO16253

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:53
Vector:pDNR-Dual
Associated Gene/Transcriptfbl-RD
Protein status:BO16253.pep: full length peptide match
Sequenced Size:1237

Clone Sequence Records

BO16253.3prime Sequence

910 bp (849 high quality bases) assembled on 2006-10-13

> BO16253.3prime
ATGGTCTAGAAAGCTTGCTCTAGTGGAGTGTTTGCTTGTGGGCGCCTTTT
CTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGAA
TCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTGC
CAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCCT
CGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCATT
GCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGCC
CACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCTA
TGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATCT
TCGCGTGATACGGAAACCCGTTTGTCGTTGAGGTGCATCTGGCCAAAGCT
TGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCAT
AAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGCC
AGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACAG
GCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAGT
TGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCACC
AGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTTT
TAGAATGTCACGTGCGTTTTCGTAGTAGTAGCACTCCGTGCGATTATGCA
GATCGGCGAAAAGAATGCCTTTGATGAGCGTGTCCAGCTCGTCGAATTTA
GCCAGCTTCATGTTGACTTGGTCGCGGAAATCCTGCTCGAACTTGAATGC
GCCACCGCCG

BO16253.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5725-PD 1206 fbl-RD 312..1203 910..19 4410 99.7 Minus
CG5725-PB 1254 fbl-RB 360..1251 910..19 4410 99.7 Minus
CG5725-PA 1260 fbl-RA 366..1257 910..19 4410 99.7 Minus
CG5725-PC 1206 fbl-RC 312..1203 910..19 4410 99.7 Minus
CG5725-PE 1539 fbl-RE 645..1536 910..19 4410 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 2352 CG5725-RG 727..1618 910..19 4430 99.8 Minus
fbl-RF 1370 CG5725-RF 204..1095 910..19 4430 99.8 Minus
fbl-RE 2386 CG5725-RE 761..1652 910..19 4430 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20390885..20391179 313..19 1475 100 Minus
3L 28110227 3L 20390456..20390634 627..449 895 100 Minus
3L 28110227 3L 20390050..20390208 910..752 780 99.4 Minus
3L 28110227 3L 20390688..20390827 450..311 685 99.3 Minus
3L 28110227 3L 20390268..20390393 751..626 630 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:40:05 has no hits.

BO16253.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:22 Download gff for BO16253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PE 645..1539 18..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:24 Download gff for BO16253.3prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 761..1652 19..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:09 Download gff for BO16253.3prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 761..1652 19..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:09 Download gff for BO16253.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20390050..20390208 752..910 99 -> Minus
3L 20390268..20390393 626..751 100 -> Minus
3L 20390458..20390634 449..625 100 -> Minus
3L 20390690..20390825 313..448 99 -> Minus
3L 20390886..20391179 19..312 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:24 Download gff for BO16253.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20383150..20383308 752..910 99 -> Minus
arm_3L 20383368..20383493 626..751 100 -> Minus
arm_3L 20383558..20383734 449..625 100 -> Minus
arm_3L 20383790..20383925 313..448 99 -> Minus
arm_3L 20383986..20384279 19..312 100   Minus

BO16253.5prime Sequence

833 bp (829 high quality bases) assembled on 2006-10-13

> BO16253.5prime
GAAGTTATCAGTCGACATGCCATGGTTTGGCATGGACATCGGCGGAACCC
TCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAG
GATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAA
CTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACA
ATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAG
ACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGC
CGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCG
AGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAG
CTGGACACGCTCATCAAAGGCATTCTTTTCGCCGATCTGCATAATCGCAC
GGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGC
AGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGA
TCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGAT
TTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTAC
TCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGT
GACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTA
CAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGA
TGCACCTCAACGACAAACGGGTTTCCGTATCAC

BO16253.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5725-PD 1206 fbl-RD 1..817 17..833 4035 99.7 Plus
CG5725-PB 1254 fbl-RB 49..865 17..833 4035 99.7 Plus
CG5725-PA 1260 fbl-RA 55..871 17..833 4035 99.7 Plus
CG5725-PC 1206 fbl-RC 1..817 17..833 4035 99.7 Plus
CG5725-PE 1539 fbl-RE 334..1150 17..833 4035 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 2352 CG5725-RG 416..1232 17..833 4055 99.8 Plus
fbl-RE 2386 CG5725-RE 450..1266 17..833 4055 99.8 Plus
fbl-RC 2093 CG5725-RC 157..973 17..833 4055 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20389913..20390208 191..486 1465 99.7 Plus
3L 28110227 3L 20390456..20390634 611..789 895 100 Plus
3L 28110227 3L 20388671..20388847 17..193 885 100 Plus
3L 28110227 3L 20390268..20390393 487..612 630 100 Plus
3L 28110227 3L 20390688..20390733 788..833 215 97.8 Plus
Blast to na_te.dros performed on 2015-02-10 17:57:47 has no hits.

BO16253.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:22 Download gff for BO16253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PE 326..1150 5..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:44 Download gff for BO16253.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RC 155..973 13..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:06:07 Download gff for BO16253.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RC 155..973 13..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:06:07 Download gff for BO16253.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20388663..20388847 5..193 97 -> Plus
3L 20389916..20390208 194..486 99 -> Plus
3L 20390268..20390393 487..612 100 -> Plus
3L 20390458..20390634 613..789 100 -> Plus
3L 20390690..20390733 790..833 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:44 Download gff for BO16253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20383368..20383493 487..612 100 -> Plus
arm_3L 20381763..20381947 5..193 97 -> Plus
arm_3L 20383016..20383308 194..486 99 -> Plus
arm_3L 20383558..20383734 613..789 100 -> Plus
arm_3L 20383790..20383833 790..833 97   Plus

BO16253.complete Sequence

1237 bp assembled on 2006-10-11

GenBank Submission: FJ633753

> BO16253.complete
GAAGTTATCAGTCGACATGCCATGGTTTGGCATGGACATCGGCGGAACCC
TCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAG
GATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAA
CTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACA
ATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAG
ACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGC
CGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCG
AGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAG
CTGGACACGCTCATCAAAGGCATTCTTTTCGCCGATCTGCATAATCGCAC
GGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGC
AGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGA
TCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGAT
TTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTAC
TCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGT
GACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTA
CAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGA
TGCACCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAAC
GCCACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGATGTG
CGCGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTTCTGC
GAGTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTTCTGG
TCCAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACTTTGG
GGCTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCCCTTA
ACGACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAGCGAA
GCAGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGCCCAC
AAGCAAACACTCCACTAGAGCAAGCTTTCTAGACCAT

BO16253.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 1287 CG5725-PG 82..1284 17..1219 5985 99.8 Plus
fbl-RE 1539 CG5725-PE 334..1536 17..1219 5985 99.8 Plus
fbl-RC 1206 CG5725-PC 1..1203 17..1219 5985 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 2352 CG5725-RG 416..1618 17..1219 5985 99.8 Plus
fbl-RE 2386 CG5725-RE 450..1652 17..1219 5985 99.8 Plus
fbl-RC 2093 CG5725-RC 157..1359 17..1219 5985 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20390885..20391179 925..1219 1475 100 Plus
3L 28110227 3L 20389913..20390208 191..486 1465 99.7 Plus
3L 28110227 3L 20390456..20390634 611..789 895 100 Plus
3L 28110227 3L 20388671..20388847 17..193 885 100 Plus
3L 28110227 3L 20390688..20390827 788..927 685 99.3 Plus
3L 28110227 3L 20390268..20390393 487..612 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:11:02 has no hits.

BO16253.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:23 Download gff for BO16253.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 49..1260 10..1220 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:39 Download gff for BO16253.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 383..1591 10..1219 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:23 Download gff for BO16253.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RC 157..1359 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:23 Download gff for BO16253.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 383..1591 10..1219 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:13 Download gff for BO16253.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RC 157..1359 17..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:13 Download gff for BO16253.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20389916..20390208 194..486 99 -> Plus
3L 20390268..20390393 487..612 100 -> Plus
3L 20390458..20390634 613..789 100 -> Plus
3L 20390690..20390825 790..925 99 -> Plus
3L 20388671..20388847 17..193 100 -> Plus
3L 20390886..20391179 926..1221 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:23 Download gff for BO16253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20381771..20381947 17..193 100 -> Plus
arm_3L 20383016..20383308 194..486 99 -> Plus
arm_3L 20383368..20383493 487..612 100 -> Plus
arm_3L 20383558..20383734 613..789 100 -> Plus
arm_3L 20383790..20383925 790..925 99 -> Plus
arm_3L 20383986..20384279 926..1221 99   Plus

BO16253.pep Sequence

Translation from 16 to 1237

> BO16253.pep
MPWFGMDIGGTLTKLVYFEPKDITPDEQDREAGILRNIRRYLTKNSAYGK
TGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDMGNFLSLAKQKGMAELVTT
VCATGGGAFKFEQDFRDQVNMKLAKFDELDTLIKGILFADLHNRTECYYY
ENARDILKSEKQQFNFSQPFPFILVNVGSGVSILAVYGPDNYKRISGTSL
GGGTFLGLCCLLTGCTSFEEAIQLATKGDNRKVDKLVKDIYGGDYNRFGL
PGDLVASSFGQMHLNDKRVSVSREDLANATLVTITNNIGSIARMCALNEK
IDRVVFVGNFLRVNPISMKLLAYAMEFWSNGTMKGLFLEHEGYFGALGCL
LQFNGELAAALNDGVEHSIHTESDSASEAAQTSSTADEPPEKAPTSKHST
RASFLDH

BO16253.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-PC 401 CG5725-PC 1..401 1..401 2093 100 Plus
fbl-PD 401 CG5725-PD 1..401 1..401 2093 100 Plus
fbl-PB 417 CG5725-PB 17..417 1..401 2093 100 Plus
fbl-PA 419 CG5725-PA 19..419 1..401 2093 100 Plus
fbl-PG 428 CG5725-PG 28..428 1..401 2093 100 Plus