Clone BO16254 Report

Search the DGRC for BO16254

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG13870-RB
Protein status:BO16254.pep: validated full length
Sequenced Size:1708

Clone Sequence Records

BO16254.3prime Sequence

866 bp (805 high quality bases) assembled on 2006-10-13

> BO16254.3prime
ATGGTCTAGAAAGCTTGCTTCATGGAATGATATCTGGGAAGCGCTCTTGG
GTTCCAACGGATCCGCAGCGCTACCATTGTTTCGGATCATGGACTGATGG
GGCGAATCCAATTGGGACTGCGATTGCGACTGTGATTCGTTCAAACCGGT
AGCATCTGAACCCTCCTTATTCTCCATCGCCCGCAACACGGAGTCCTTGT
AGAACGCGGTCTCATCGATCTTGCGCCGGTACAGTCCGGTCGGGTGCTCC
GGATCGAAAACAATGTCCGGACGTATATCGCTGTCGGTGACCAGGACCCG
AGCACCGGGAATCGGCAGGAACTTGAACAGACGCTTGCGCAACTTGGGCA
TGTAGGTGACCCTCTGGTGATCGGGCACCTGGGTCAGTCGACTGGGAATC
ACCTCCGGCAGCTCAATGGGATAGTCCATCAGTCGCCTCTCCGGCGGTAG
CTTCTGCTTGATGGCCTCCAGTTGGCGTGCGGTCAGCTGCATCGGTCGTT
CGCCATCCTTCCATCGCTCCTGGCCACTATTGAAGGCGATCTTCTTGTTG
TTCTTCAATTGCTTGCGGATCACCCGCTTGGCTGCACAGTTGTAGGTGAT
CTTGGGCACGTACGGAGGAACCGGATACGCCCGAATGGAAATGGGATGTC
GCTGCGGCTGGCTCAGCATGTTAATGTACTTGGAATCGGCATACATGCTT
ATCGGCTTGCCCTGCTTTTTGGAAGAAGTGGGTTTCTTGGTGGGCTTGGG
TCTATCTTTGCGTCCCATTAGGAAGACATGACGATGGCCTTGGCCCTCGA
CATGGCGCCAATCCGGCTCACAGAGTCGCTTTCGACTGATCCTTTCAAAT
GGCAGGCGGCGAAACT

BO16254.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-PB 1677 CG13870-RB 827..1674 866..19 4240 100 Minus
CG13870-PA 1707 CG13870-RA 857..1704 866..19 4240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-RA 1811 CG13870-RA 922..1769 866..19 4240 100 Minus
CG13870-RB 1921 CG13870-RB 892..1739 866..19 4240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20344989..20345836 866..19 4240 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:07:47 has no hits.

BO16254.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:23 Download gff for BO16254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-PA 857..1707 15..866 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:18 Download gff for BO16254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 892..1742 15..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:16 Download gff for BO16254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 892..1742 15..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:16 Download gff for BO16254.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20344989..20345839 15..866 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:18 Download gff for BO16254.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16232494..16233344 15..866 99   Minus

BO16254.5prime Sequence

888 bp (790 high quality bases) assembled on 2006-10-13

> BO16254.5prime
GAAGTTATCAGTCGACATGGAGAAGAGCACACTGAAGATCAATAATGAGG
ACCGGCAGAATTTTGTGGCCACACGGATGAGTCTGCCGCTCTTTATGGTG
TCCCGCAATCGTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATT
TAAGTTGGCCGAAAACAGACGAGAGGCCTTCAGCAAAGCCACCTTTGATC
ACTACCGCCACATTACGGGTTTCGACAAGACGCCAAAGAATCCGTATCCG
GAACGTCGAAGGCTACACATCGATCGGAGTATGACCAAATGGAGGGGCTG
GCAACTGCCCCCAAATCATTACGGAGTGCCCCCGGAACCGTATCTCCGAC
TGAAGGGCACCAAGGGCTCCGTATTCGCCAAGCCGCACACGAATCATAGT
CGCGTCTCCATTAAACCACCGCCATATCATTTTTACGAACTTCCGGCGGA
AATCGAGAGGCTCTTCAAGCGCCCGAACTTGCAAAAGGGTATCTTCCTTT
CAAATGCCCGCGATCGTCGACCGACCACACACGCCATGATTTCCAATCTG
TCTGGCTGCTGGCGTAATCCCAAGGATGCCGGTCCCTGCGACACCCATAC
AAACATCTTTGAGTTGGCCGCAAATGCTGTACCCGTCACAAAGGCGCCAC
GCCCTAATCCGCACCTGTTTCTGCGCCACTCCTGTGTGCCCACCAAGCCC
AATCGACTGATCCGACGCCATATCAGCATGGAACCGGCTCCAGGTCGCTA
CTGCACCAGTTATCCGAATGTGTGTCCCTGTCCGTCTGGTAAGACCAGTG
TGCCGCGACTACAGCTGATGATTGATGACCAGAAGCGCCTGAAGTTTCGC
CGCCTGCCATTTTGAAGGATCAGTCGAAAGCGACTCTG

BO16254.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-PB 1677 CG13870-RB 1..872 17..888 4285 99.6 Plus
CG13870-PA 1707 CG13870-RA 175..902 161..888 3565 99.5 Plus
CG13870-PA 1707 CG13870-RA 1..145 17..161 725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-RB 1921 CG13870-RB 64..937 15..888 4325 99.7 Plus
CG13870-RA 1811 CG13870-RA 240..967 161..888 3595 99.6 Plus
CG13870-RA 1811 CG13870-RA 64..210 15..161 735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20344650..20345034 504..888 1880 99.2 Plus
2R 25286936 2R 20344195..20344537 161..503 1715 100 Plus
2R 25286936 2R 20343908..20343998 15..105 455 100 Plus
2R 25286936 2R 20344056..20344112 105..161 285 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:51:01 has no hits.

BO16254.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:24 Download gff for BO16254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-PB 1..872 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:43 Download gff for BO16254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 56..937 6..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:41 Download gff for BO16254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 56..937 6..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:41 Download gff for BO16254.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20343900..20343997 6..104 95 -> Plus
2R 20344056..20344112 105..161 100 -> Plus
2R 20344196..20344537 162..503 100 -> Plus
2R 20344650..20345034 504..888 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:43 Download gff for BO16254.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16231405..16231502 6..104 95 -> Plus
arm_2R 16231561..16231617 105..161 100 -> Plus
arm_2R 16231701..16232042 162..503 100 -> Plus
arm_2R 16232155..16232539 504..888 99   Plus

BO16254.complete Sequence

1708 bp assembled on 2006-10-11

GenBank Submission: FJ633754

> BO16254.complete
GAAGTTATCAGTCGACATGGAGAAGAGCACACTGAAGATCAATAATGAGG
ACCGGCAGAATTTTGTGGCCACACGGATGAGTCTGCCGCTCTTTATGGTG
TCCCGCAATCGTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATT
TAAGTTGGCCGAAAACAGACGAGAGGCCTTCAGCAAAGCCACCTTTGATC
ACTACCGCCACATTACGGGTTTCGACAAGACGCCAAAGAATCCGTATCCG
GAACGTCGAAGGCTACACATCGATCGGAGTATGACCAAATGGAGGGGCTG
GCAACTGCCCCCAAATCATTACGGAGTGCCCCCGGAACCGTATCTCCGAC
TGAAGGGCACCAAGGGCTCCGTATTCGCCAAGCCGCACACGAATCATAGT
CGCGTCTCCATTAAACCACCGCCATATCATTTTTACGAACTTCCGGCGGA
AATCGAGAGGCTCTTCAAGCGCCCGAACTTGCAAAAGGGTATCTTCCTTT
CAAATGCCCGCGATCGTCGACCGACCACACACGCCATGATTTCCAATCTG
TCTGGCTGCTGGCGTAATCCCAAGGATGCCGGTCCCTGCGACACCCATAC
AAACATCTTTGAGTTGGCCGCAAATGCTGTACCCGTCACAAAGGCGCCAC
GCCCTAATCCGCACCTGTTTCTGCGCCACTCCTGTGTGCCCACCAAGCCC
AATCGACTGATCCGACGCCATATCAGCATGGAACCGGCTCCAGGTCGCTA
CTGCACCAGTTATCCGAATGTGTGTCCCTGTCCGTCTGGTAAGACCAGTG
TGCCGGGACTACAGCTGATGATTGATGACCAGAAGCGCCTGAAGTTTCGC
CGCCTGCCATTTGAAAGGATCAGTCGAAAGCGACTCTGTGAGCCGGATTG
GCGCCATGTCGAGGGCCAAGGCCATCGTCATGTCTTCCTAATGGGACGCA
AAGATAGACCCAAGCCCACCAAGAAACCCACTTCTTCCAAAAAGCAGGGC
AAGCCGATAAGCATGTATGCCGATTCCAAGTACATTAACATGCTGAGCCA
GCCGCAGCGACATCCCATTTCCATTCGGGCGTATCCGGTTCCTCCGTACG
TGCCCAAGATCACCTACAACTGTGCAGCCAAGCGGGTGATCCGCAAGCAA
TTGAAGAACAACAAGAAGATCGCCTTCAATAGTGGCCAGGAGCGATGGAA
GGATGGCGAACGACCGATGCAGCTGACCGCACGCCAACTGGAGGCCATCA
AGCAGAAGCTACCGCCGGAGAGGCGACTGATGGACTATCCCATTGAGCTG
CCGGAGGTGATTCCCAGTCGACTGACCCAGGTGCCCGATCACCAGAGGGT
CACCTACATGCCCAAGTTGCGCAAGCGTCTGTTCAAGTTCCTGCCGATTC
CCGGTGCTCGGGTCCTGGTCACCGACAGCGATATACGTCCGGACATTGTT
TTCGATCCGGAGCACCCGACCGGACTGTACCGGCGCAAGATCGATGAGAC
CGCGTTCTACAAGGACTCCGTGTTGCGGGCGATGGAGAATAAGGAGGGTT
CAGATGCTACCGGTTTGAACGAATCACAGTCGCAATCGCAGTCCCAATTG
GATTCGCCCCATCAGTCCATGATCCGAAACAATGGTAGCGCTGCGGATCC
GTTGGAACCCAAGAGCGCTTCCCAGATATCATTCCATGAAGCAAGCTTTC
TAGACCAT

BO16254.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-RB 1677 CG13870-PB 1..1674 17..1690 8370 100 Plus
CG13870-RA 1707 CG13870-PA 175..1704 161..1690 7650 100 Plus
CG13870-RA 1707 CG13870-PA 1..145 17..161 725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-RB 1921 CG13870-RB 64..1739 15..1690 8380 100 Plus
CG13870-RA 1811 CG13870-RA 240..1769 161..1690 7650 100 Plus
CG13870-RA 1811 CG13870-RA 64..210 15..161 735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20344650..20345836 504..1690 5935 100 Plus
2R 25286936 2R 20344195..20344537 161..503 1715 100 Plus
2R 25286936 2R 20343908..20343998 15..105 455 100 Plus
2R 25286936 2R 20344056..20344112 105..161 285 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:45:11 has no hits.

BO16254.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:27 Download gff for BO16254.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 1..1677 17..1694 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:43 Download gff for BO16254.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 56..1742 6..1694 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:06 Download gff for BO16254.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 66..1739 17..1692 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:27 Download gff for BO16254.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 56..1742 6..1694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:41 Download gff for BO16254.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 66..1739 17..1692 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:41 Download gff for BO16254.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20343910..20343997 17..104 100 -> Plus
2R 20344056..20344112 105..161 100 -> Plus
2R 20344196..20344537 162..503 100 -> Plus
2R 20344650..20345836 504..1692 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:06 Download gff for BO16254.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16231415..16231502 17..104 100 -> Plus
arm_2R 16231561..16231617 105..161 100 -> Plus
arm_2R 16231701..16232042 162..503 100 -> Plus
arm_2R 16232155..16233341 504..1692 99   Plus

BO16254.pep Sequence

Translation from 16 to 1708

> BO16254.pep
MEKSTLKINNEDRQNFVATRMSLPLFMVSRNRIRKENLPRVEKQFKLAEN
RREAFSKATFDHYRHITGFDKTPKNPYPERRRLHIDRSMTKWRGWQLPPN
HYGVPPEPYLRLKGTKGSVFAKPHTNHSRVSIKPPPYHFYELPAEIERLF
KRPNLQKGIFLSNARDRRPTTHAMISNLSGCWRNPKDAGPCDTHTNIFEL
AANAVPVTKAPRPNPHLFLRHSCVPTKPNRLIRRHISMEPAPGRYCTSYP
NVCPCPSGKTSVPGLQLMIDDQKRLKFRRLPFERISRKRLCEPDWRHVEG
QGHRHVFLMGRKDRPKPTKKPTSSKKQGKPISMYADSKYINMLSQPQRHP
ISIRAYPVPPYVPKITYNCAAKRVIRKQLKNNKKIAFNSGQERWKDGERP
MQLTARQLEAIKQKLPPERRLMDYPIELPEVIPSRLTQVPDHQRVTYMPK
LRKRLFKFLPIPGARVLVTDSDIRPDIVFDPEHPTGLYRRKIDETAFYKD
SVLRAMENKEGSDATGLNESQSQSQSQLDSPHQSMIRNNGSAADPLEPKS
ASQISFHEASFLDH

BO16254.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-PB 558 CG13870-PB 1..558 1..558 2999 100 Plus
CG13870-PA 568 CG13870-PA 1..568 1..558 2978 98.2 Plus