Clone Sequence Records
BO16254.3prime Sequence
866 bp (805 high quality bases) assembled on 2006-10-13
> BO16254.3prime
ATGGTCTAGAAAGCTTGCTTCATGGAATGATATCTGGGAAGCGCTCTTGG
GTTCCAACGGATCCGCAGCGCTACCATTGTTTCGGATCATGGACTGATGG
GGCGAATCCAATTGGGACTGCGATTGCGACTGTGATTCGTTCAAACCGGT
AGCATCTGAACCCTCCTTATTCTCCATCGCCCGCAACACGGAGTCCTTGT
AGAACGCGGTCTCATCGATCTTGCGCCGGTACAGTCCGGTCGGGTGCTCC
GGATCGAAAACAATGTCCGGACGTATATCGCTGTCGGTGACCAGGACCCG
AGCACCGGGAATCGGCAGGAACTTGAACAGACGCTTGCGCAACTTGGGCA
TGTAGGTGACCCTCTGGTGATCGGGCACCTGGGTCAGTCGACTGGGAATC
ACCTCCGGCAGCTCAATGGGATAGTCCATCAGTCGCCTCTCCGGCGGTAG
CTTCTGCTTGATGGCCTCCAGTTGGCGTGCGGTCAGCTGCATCGGTCGTT
CGCCATCCTTCCATCGCTCCTGGCCACTATTGAAGGCGATCTTCTTGTTG
TTCTTCAATTGCTTGCGGATCACCCGCTTGGCTGCACAGTTGTAGGTGAT
CTTGGGCACGTACGGAGGAACCGGATACGCCCGAATGGAAATGGGATGTC
GCTGCGGCTGGCTCAGCATGTTAATGTACTTGGAATCGGCATACATGCTT
ATCGGCTTGCCCTGCTTTTTGGAAGAAGTGGGTTTCTTGGTGGGCTTGGG
TCTATCTTTGCGTCCCATTAGGAAGACATGACGATGGCCTTGGCCCTCGA
CATGGCGCCAATCCGGCTCACAGAGTCGCTTTCGACTGATCCTTTCAAAT
GGCAGGCGGCGAAACT
BO16254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-PB | 1677 | CG13870-RB | 827..1674 | 866..19 | 4240 | 100 | Minus |
CG13870-PA | 1707 | CG13870-RA | 857..1704 | 866..19 | 4240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-RA | 1811 | CG13870-RA | 922..1769 | 866..19 | 4240 | 100 | Minus |
CG13870-RB | 1921 | CG13870-RB | 892..1739 | 866..19 | 4240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20344989..20345836 | 866..19 | 4240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:07:47 has no hits.
BO16254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:23 Download gff for
BO16254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-PA | 857..1707 | 15..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:18 Download gff for
BO16254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 892..1742 | 15..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:16 Download gff for
BO16254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 892..1742 | 15..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:16 Download gff for
BO16254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20344989..20345839 | 15..866 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:18 Download gff for
BO16254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16232494..16233344 | 15..866 | 99 | | Minus |
BO16254.5prime Sequence
888 bp (790 high quality bases) assembled on 2006-10-13
> BO16254.5prime
GAAGTTATCAGTCGACATGGAGAAGAGCACACTGAAGATCAATAATGAGG
ACCGGCAGAATTTTGTGGCCACACGGATGAGTCTGCCGCTCTTTATGGTG
TCCCGCAATCGTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATT
TAAGTTGGCCGAAAACAGACGAGAGGCCTTCAGCAAAGCCACCTTTGATC
ACTACCGCCACATTACGGGTTTCGACAAGACGCCAAAGAATCCGTATCCG
GAACGTCGAAGGCTACACATCGATCGGAGTATGACCAAATGGAGGGGCTG
GCAACTGCCCCCAAATCATTACGGAGTGCCCCCGGAACCGTATCTCCGAC
TGAAGGGCACCAAGGGCTCCGTATTCGCCAAGCCGCACACGAATCATAGT
CGCGTCTCCATTAAACCACCGCCATATCATTTTTACGAACTTCCGGCGGA
AATCGAGAGGCTCTTCAAGCGCCCGAACTTGCAAAAGGGTATCTTCCTTT
CAAATGCCCGCGATCGTCGACCGACCACACACGCCATGATTTCCAATCTG
TCTGGCTGCTGGCGTAATCCCAAGGATGCCGGTCCCTGCGACACCCATAC
AAACATCTTTGAGTTGGCCGCAAATGCTGTACCCGTCACAAAGGCGCCAC
GCCCTAATCCGCACCTGTTTCTGCGCCACTCCTGTGTGCCCACCAAGCCC
AATCGACTGATCCGACGCCATATCAGCATGGAACCGGCTCCAGGTCGCTA
CTGCACCAGTTATCCGAATGTGTGTCCCTGTCCGTCTGGTAAGACCAGTG
TGCCGCGACTACAGCTGATGATTGATGACCAGAAGCGCCTGAAGTTTCGC
CGCCTGCCATTTTGAAGGATCAGTCGAAAGCGACTCTG
BO16254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-PB | 1677 | CG13870-RB | 1..872 | 17..888 | 4285 | 99.6 | Plus |
CG13870-PA | 1707 | CG13870-RA | 175..902 | 161..888 | 3565 | 99.5 | Plus |
CG13870-PA | 1707 | CG13870-RA | 1..145 | 17..161 | 725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-RB | 1921 | CG13870-RB | 64..937 | 15..888 | 4325 | 99.7 | Plus |
CG13870-RA | 1811 | CG13870-RA | 240..967 | 161..888 | 3595 | 99.6 | Plus |
CG13870-RA | 1811 | CG13870-RA | 64..210 | 15..161 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20344650..20345034 | 504..888 | 1880 | 99.2 | Plus |
2R | 25286936 | 2R | 20344195..20344537 | 161..503 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 20343908..20343998 | 15..105 | 455 | 100 | Plus |
2R | 25286936 | 2R | 20344056..20344112 | 105..161 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:51:01 has no hits.
BO16254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:24 Download gff for
BO16254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-PB | 1..872 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:43 Download gff for
BO16254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 56..937 | 6..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:41 Download gff for
BO16254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 56..937 | 6..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:41 Download gff for
BO16254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20343900..20343997 | 6..104 | 95 | -> | Plus |
2R | 20344056..20344112 | 105..161 | 100 | -> | Plus |
2R | 20344196..20344537 | 162..503 | 100 | -> | Plus |
2R | 20344650..20345034 | 504..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:43 Download gff for
BO16254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16231405..16231502 | 6..104 | 95 | -> | Plus |
arm_2R | 16231561..16231617 | 105..161 | 100 | -> | Plus |
arm_2R | 16231701..16232042 | 162..503 | 100 | -> | Plus |
arm_2R | 16232155..16232539 | 504..888 | 99 | | Plus |
BO16254.complete Sequence
1708 bp assembled on 2006-10-11
GenBank Submission: FJ633754
> BO16254.complete
GAAGTTATCAGTCGACATGGAGAAGAGCACACTGAAGATCAATAATGAGG
ACCGGCAGAATTTTGTGGCCACACGGATGAGTCTGCCGCTCTTTATGGTG
TCCCGCAATCGTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATT
TAAGTTGGCCGAAAACAGACGAGAGGCCTTCAGCAAAGCCACCTTTGATC
ACTACCGCCACATTACGGGTTTCGACAAGACGCCAAAGAATCCGTATCCG
GAACGTCGAAGGCTACACATCGATCGGAGTATGACCAAATGGAGGGGCTG
GCAACTGCCCCCAAATCATTACGGAGTGCCCCCGGAACCGTATCTCCGAC
TGAAGGGCACCAAGGGCTCCGTATTCGCCAAGCCGCACACGAATCATAGT
CGCGTCTCCATTAAACCACCGCCATATCATTTTTACGAACTTCCGGCGGA
AATCGAGAGGCTCTTCAAGCGCCCGAACTTGCAAAAGGGTATCTTCCTTT
CAAATGCCCGCGATCGTCGACCGACCACACACGCCATGATTTCCAATCTG
TCTGGCTGCTGGCGTAATCCCAAGGATGCCGGTCCCTGCGACACCCATAC
AAACATCTTTGAGTTGGCCGCAAATGCTGTACCCGTCACAAAGGCGCCAC
GCCCTAATCCGCACCTGTTTCTGCGCCACTCCTGTGTGCCCACCAAGCCC
AATCGACTGATCCGACGCCATATCAGCATGGAACCGGCTCCAGGTCGCTA
CTGCACCAGTTATCCGAATGTGTGTCCCTGTCCGTCTGGTAAGACCAGTG
TGCCGGGACTACAGCTGATGATTGATGACCAGAAGCGCCTGAAGTTTCGC
CGCCTGCCATTTGAAAGGATCAGTCGAAAGCGACTCTGTGAGCCGGATTG
GCGCCATGTCGAGGGCCAAGGCCATCGTCATGTCTTCCTAATGGGACGCA
AAGATAGACCCAAGCCCACCAAGAAACCCACTTCTTCCAAAAAGCAGGGC
AAGCCGATAAGCATGTATGCCGATTCCAAGTACATTAACATGCTGAGCCA
GCCGCAGCGACATCCCATTTCCATTCGGGCGTATCCGGTTCCTCCGTACG
TGCCCAAGATCACCTACAACTGTGCAGCCAAGCGGGTGATCCGCAAGCAA
TTGAAGAACAACAAGAAGATCGCCTTCAATAGTGGCCAGGAGCGATGGAA
GGATGGCGAACGACCGATGCAGCTGACCGCACGCCAACTGGAGGCCATCA
AGCAGAAGCTACCGCCGGAGAGGCGACTGATGGACTATCCCATTGAGCTG
CCGGAGGTGATTCCCAGTCGACTGACCCAGGTGCCCGATCACCAGAGGGT
CACCTACATGCCCAAGTTGCGCAAGCGTCTGTTCAAGTTCCTGCCGATTC
CCGGTGCTCGGGTCCTGGTCACCGACAGCGATATACGTCCGGACATTGTT
TTCGATCCGGAGCACCCGACCGGACTGTACCGGCGCAAGATCGATGAGAC
CGCGTTCTACAAGGACTCCGTGTTGCGGGCGATGGAGAATAAGGAGGGTT
CAGATGCTACCGGTTTGAACGAATCACAGTCGCAATCGCAGTCCCAATTG
GATTCGCCCCATCAGTCCATGATCCGAAACAATGGTAGCGCTGCGGATCC
GTTGGAACCCAAGAGCGCTTCCCAGATATCATTCCATGAAGCAAGCTTTC
TAGACCAT
BO16254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-RB | 1677 | CG13870-PB | 1..1674 | 17..1690 | 8370 | 100 | Plus |
CG13870-RA | 1707 | CG13870-PA | 175..1704 | 161..1690 | 7650 | 100 | Plus |
CG13870-RA | 1707 | CG13870-PA | 1..145 | 17..161 | 725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-RB | 1921 | CG13870-RB | 64..1739 | 15..1690 | 8380 | 100 | Plus |
CG13870-RA | 1811 | CG13870-RA | 240..1769 | 161..1690 | 7650 | 100 | Plus |
CG13870-RA | 1811 | CG13870-RA | 64..210 | 15..161 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20344650..20345836 | 504..1690 | 5935 | 100 | Plus |
2R | 25286936 | 2R | 20344195..20344537 | 161..503 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 20343908..20343998 | 15..105 | 455 | 100 | Plus |
2R | 25286936 | 2R | 20344056..20344112 | 105..161 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:45:11 has no hits.
BO16254.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:27 Download gff for
BO16254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 1..1677 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:43 Download gff for
BO16254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 56..1742 | 6..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:06 Download gff for
BO16254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 66..1739 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:27 Download gff for
BO16254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 56..1742 | 6..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:41 Download gff for
BO16254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13870-RB | 66..1739 | 17..1692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:41 Download gff for
BO16254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20343910..20343997 | 17..104 | 100 | -> | Plus |
2R | 20344056..20344112 | 105..161 | 100 | -> | Plus |
2R | 20344196..20344537 | 162..503 | 100 | -> | Plus |
2R | 20344650..20345836 | 504..1692 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:06 Download gff for
BO16254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16231415..16231502 | 17..104 | 100 | -> | Plus |
arm_2R | 16231561..16231617 | 105..161 | 100 | -> | Plus |
arm_2R | 16231701..16232042 | 162..503 | 100 | -> | Plus |
arm_2R | 16232155..16233341 | 504..1692 | 99 | | Plus |
BO16254.pep Sequence
Translation from 16 to 1708
> BO16254.pep
MEKSTLKINNEDRQNFVATRMSLPLFMVSRNRIRKENLPRVEKQFKLAEN
RREAFSKATFDHYRHITGFDKTPKNPYPERRRLHIDRSMTKWRGWQLPPN
HYGVPPEPYLRLKGTKGSVFAKPHTNHSRVSIKPPPYHFYELPAEIERLF
KRPNLQKGIFLSNARDRRPTTHAMISNLSGCWRNPKDAGPCDTHTNIFEL
AANAVPVTKAPRPNPHLFLRHSCVPTKPNRLIRRHISMEPAPGRYCTSYP
NVCPCPSGKTSVPGLQLMIDDQKRLKFRRLPFERISRKRLCEPDWRHVEG
QGHRHVFLMGRKDRPKPTKKPTSSKKQGKPISMYADSKYINMLSQPQRHP
ISIRAYPVPPYVPKITYNCAAKRVIRKQLKNNKKIAFNSGQERWKDGERP
MQLTARQLEAIKQKLPPERRLMDYPIELPEVIPSRLTQVPDHQRVTYMPK
LRKRLFKFLPIPGARVLVTDSDIRPDIVFDPEHPTGLYRRKIDETAFYKD
SVLRAMENKEGSDATGLNESQSQSQSQLDSPHQSMIRNNGSAADPLEPKS
ASQISFHEASFLDH
BO16254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13870-PB | 558 | CG13870-PB | 1..558 | 1..558 | 2999 | 100 | Plus |
CG13870-PA | 568 | CG13870-PA | 1..568 | 1..558 | 2978 | 98.2 | Plus |