Clone Sequence Records
BO16255.3prime Sequence
927 bp (891 high quality bases) assembled on 2006-10-13
> BO16255.3prime
ATGGTCTAGAAAGCTTGCGTTTTCATCCTCTTCCTCGAAATCGTCGTCAT
CCGACTCGGAGGCCTCATCCATGTCGTCGCTGATGTAGGTGCTATTGCAC
TGCCCACCATCATCGTAGTCATAGTCGTTTTCATCACCGACATCCTCTTC
TAAATTATCCTCGGCATCCTCGCCGACTGCATAGCTCTCTGCTGCGAAGT
GGTTCTGCTCCAGGGTCAGGGGCTCCATTGGCATGGTGCCCACAGCCACA
TGGTCGCCGTTTCCCAAATCGTGTTGCAAAAAGCCTGGCGGGGATTCGAG
CGCCTTGCCCGAAGGTCCAGGGGACTTTGAGAGCGCTGCTGTCGCCGGTT
TTTGGCTGTCCTCCGTTTTCCGAGGGCTCTCCTCCCCGGCTGTATTGCGG
TTCCTGTGGGCAGCACTTGGCTCCTTGGTGGTGCTGGAACCCTGAGCCCG
CGGCAGAAGCAGCGGCATTGTATCCGGCTCGATGGTTTTCTCATAGTCGG
TAAAGTTAAACAGCGGCGGCAAGCTCCTGCCGTTGGGCAACTGCTGGTGT
GGATCCTGACGAAGTTCGTCGAAGAACGGATGGGCACAGCCCATCAACGG
AGAAACCCTGGCATTGGGCGAGTATATCAGCATCTTGGAGACCAGATCTA
TGGCCTCCGCCGGTGTGCGAATCCTGAACACCTTGGACCAGGGGTGCGGC
TTCAGTTCCGGCAACTTGAACTGCTTGTAATGCGGATTCATGTCATGGAG
CTGCTCCGAGGTGGGAGTGCCCATAACCTTGACGATCTCTACAATCTGGT
CCACTCCCGAGTCCCCGGGAAAGATGAGCTGGCCCAGCAGCAACTCTGAC
ATCACACACCCGGCGCTCCACATATCGATCTTGGTGGTATAGTCAGTGGA
GCAAAAAATAGCTCAGGCGCACGATAG
BO16255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31003-PA | 1506 | gskt-RA | 613..1503 | 909..19 | 4380 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-RA | 1772 | CG31003-RA | 729..1638 | 927..19 | 4480 | 99.6 | Minus |
| sgg-RR | 5004 | CG5-RR | 1708..1832 | 891..767 | 205 | 77.6 | Minus |
| sgg-RQ | 4499 | CG5-RQ | 2910..3034 | 891..767 | 205 | 77.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31373155..31374064 | 927..19 | 4455 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:59:35 has no hits.
BO16255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:25 Download gff for
BO16255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31003-PA | 594..1506 | 15..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:46 Download gff for
BO16255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 729..1644 | 11..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:18 Download gff for
BO16255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 729..1644 | 11..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:18 Download gff for
BO16255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31373155..31374070 | 11..927 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:46 Download gff for
BO16255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27198877..27199792 | 11..927 | 99 | | Minus |
BO16255.5prime Sequence
865 bp (807 high quality bases) assembled on 2006-10-13
> BO16255.5prime
GAAGTTATCAGTCGACATGGCTTCCCAGAGTAAGAACAGTGGGTTGACCA
ACAAGGTGACCACGGTGGTGGCCACCAATGCCTTCGGCGCTGATGTGATG
AGCGAGATCAGCTACACGGACGCGAAAGTTGTGGGCAATGGCAGCTTCGG
CGTGGTCTTCCAGGCCAAAATGGTGCCCAGCAACGAAATGGTGGCCATAA
AGAAGGTCCTGCAGGATCGGCGCTTCAAGAATCGGGAACTGCAAATCATG
CGCAAGCTGCGCCACGATAACATCATCACTCTCAAGTGGTTCTTCTTTTC
AAGTGGCGAGAAAAGGGACGAGGTCTATCTGAACCTGGTCATGGAGTTCT
TGCCGGAGACGCTGTATAAAGTGGAGCGACAGTACGCAAGGGCAAAGCAA
ACCTTGCCAGTTAACTTTGTCCGACTTTACATGTACCAGCTGCTGAGGAG
CATGGGATATCTCCACAGCTTGGGATTCTGTCACAGGGACATCAAGCCGC
AGAACATGCTGCTCGATTCGGAGACGGGTGTGCTTAAGCTCTGCGATTTC
GGCAGTGCCAAGCAGCTGATCTCCGGCGAACCCAATGTCTCGTACATCTG
CTCAAGGTACTATCGTGCGCCTGAGCTAATTTTTGGCTCCACTGACTATA
CCACCAAGATCGATATGTGGAGCGCCGGGTGTGTGATGTCAGAGTTGCTG
CTGGGCCAGCTCATCTTTCCCGGGGACTCGGGAGTGGACCAGATTGTAGA
GATCGTCAAGGTTATGGGCACTCCCACCTCGGAGCAGCTCCATGACATGA
ATCCGCATTACAAGCAGTTTCAGTTGCCGGAACTGAAGCCGCACCCCTGG
TCCAAGGTGTCAAGA
BO16255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31003-PA | 1506 | gskt-RA | 1..844 | 17..860 | 4145 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-RA | 1772 | CG31003-RA | 136..979 | 17..860 | 4175 | 99.6 | Plus |
| sgg-RR | 5004 | CG5-RR | 1456..1832 | 395..771 | 505 | 75.9 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2658..3034 | 395..771 | 505 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31372562..31373405 | 17..860 | 4175 | 99.6 | Plus |
| X | 23542271 | X | 2671374..2671545 | 491..662 | 335 | 79.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:16:22 has no hits.
BO16255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:26 Download gff for
BO16255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31003-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:02 Download gff for
BO16255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..983 | 8..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:11 Download gff for
BO16255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..983 | 8..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:11 Download gff for
BO16255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31372553..31373409 | 8..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:02 Download gff for
BO16255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27198275..27199131 | 8..864 | 99 | | Plus |
BO16255.complete Sequence
1537 bp assembled on 2006-10-11
GenBank Submission: FJ633755
> BO16255.complete
GAAGTTATCAGTCGACATGGCTTCCCAGAGTAAGAACAGTGGGTTGACCA
ACAAGGTGACCACGGTGGTGGCCACCAATGCCTTCGGCGCTGATGTGATG
AGCGAGATCAGCTACACGGACGCGAAAGTTGTGGGCAATGGCAGCTTCGG
CGTGGTCTTCCAGGCCAAAATGGTGCCCAGCAACGAAATGGTGGCCATAA
AGAAGGTCCTGCAGGATCGGCGCTTCAAGAATCGGGAACTGCAAATCATG
CGCAAGCTGCGCCACGATAACATCATCACTCTCAAGTGGTTCTTCTTTTC
AAGTGGCGAGAAAAGGGACGAGGTCTATCTGAACCTGGTCATGGAGTTCT
TGCCGGAGACGCTGTATAAAGTGGAGCGACAGTACGCAAGGGCAAAGCAA
ACCTTGCCAGTTAACTTTGTCCGACTTTACATGTACCAGCTGCTGAGGAG
CATGGGATATCTCCACAGCTTGGGATTCTGTCACAGGGACATCAAGCCGC
AGAACATGCTGCTCGATTCGGAGACGGGTGTGCTTAAGCTCTGCGATTTC
GGCAGTGCCAAGCAGCTGATCTCCGGCGAACCCAATGTCTCGTACATCTG
CTCAAGGTACTATCGTGCGCCTGAGCTAATTTTTGGCTCCACTGACTATA
CCACCAAGATCGATATGTGGAGCGCCGGGTGTGTGATGTCAGAGTTGCTG
CTGGGCCAGCTCATCTTTCCCGGGGACTCGGGAGTGGACCAGATTGTAGA
GATCGTCAAGGTTATGGGCACTCCCACCTCGGAGCAGCTCCATGACATGA
ATCCGCATTACAAGCAGTTCAAGTTGCCGGAACTGAAGCCGCACCCCTGG
TCCAAGGTGTTCAGGATTCGCACACCGGCGGAGGCCATAGATCTGGTCTC
CAAGATGCTGATATACTCGCCCAATGCCAGGGTTTCTCCGTTGATGGGCT
GTGCCCATCCGTTCTTCGACGAACTTCGTCAGGATCCACACCAGCAGTTG
CCCAACGGCAGGAGCTTGCCGCCGCTGTTTAACTTTACCGACTATGAGAA
AACCATCGAGCCGGATACAATGCCGCTGCTTCTGCCGCGGGCTCAGGGTT
CCAGCACCACCAAGGAGCCAAGTGCTGCCCACAGGAACCGCAATACAGCC
GGGGAGGAGAGCCCTCGGAAAACGGAGGACAGCCAAAAACCGGCGACAGC
AGCGCTCTCAAAGTCCCCTGGACCTTCGGGCAAGGCGCTCGAATCCCCGC
CAGGCTTTTTGCAACACGATTTGGGAAACGGCGACCATGTGGCTGTGGGC
ACCATGCCAATGGAGCCCCTGACCCTGGAGCAGAACCACTTCGCAGCAGA
GAGCTATGCAGTCGGCGAGGATGCCGAGGATAATTTAGAAGAGGATGTCG
GTGATGAAAACGACTATGACTACGATGATGGTGGGCAGTGCAATAGCACC
TACATCAGCGACGACATGGATGAGGCCTCCGAGTCGGATGACGACGATTT
CGAGGAAGAGGATGAAAACGCAAGCTTTCTAGACCAT
BO16255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-RA | 1506 | CG31003-PA | 1..1503 | 17..1519 | 7470 | 99.8 | Plus |
| sgg-RR | 1794 | CG2621-PR | 604..884 | 491..771 | 490 | 78.3 | Plus |
| sgg-RQ | 3507 | CG2621-PQ | 2317..2597 | 491..771 | 490 | 78.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-RA | 1772 | CG31003-RA | 136..1638 | 17..1519 | 7470 | 99.8 | Plus |
| sgg-RR | 5004 | CG5-RR | 1552..1832 | 491..771 | 490 | 78.3 | Plus |
| sgg-RQ | 4499 | CG5-RQ | 2754..3034 | 491..771 | 490 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31372562..31374064 | 17..1519 | 7470 | 99.8 | Plus |
| X | 23542271 | X | 2671374..2671545 | 491..662 | 335 | 79.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:31:38 has no hits.
BO16255.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:30 Download gff for
BO16255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 1..1506 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:45 Download gff for
BO16255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..1644 | 8..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:30 Download gff for
BO16255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 136..1638 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:30 Download gff for
BO16255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 127..1644 | 8..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:03 Download gff for
BO16255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gskt-RA | 136..1638 | 17..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:03 Download gff for
BO16255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31372562..31374064 | 17..1521 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:30 Download gff for
BO16255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27198284..27199786 | 17..1521 | 99 | | Plus |
BO16255.pep Sequence
Translation from 16 to 1537
> BO16255.pep
MASQSKNSGLTNKVTTVVATNAFGADVMSEISYTDAKVVGNGSFGVVFQA
KMVPSNEMVAIKKVLQDRRFKNRELQIMRKLRHDNIITLKWFFFSSGEKR
DEVYLNLVMEFLPETLYKVERQYARAKQTLPVNFVRLYMYQLLRSMGYLH
SLGFCHRDIKPQNMLLDSETGVLKLCDFGSAKQLISGEPNVSYICSRYYR
APELIFGSTDYTTKIDMWSAGCVMSELLLGQLIFPGDSGVDQIVEIVKVM
GTPTSEQLHDMNPHYKQFKLPELKPHPWSKVFRIRTPAEAIDLVSKMLIY
SPNARVSPLMGCAHPFFDELRQDPHQQLPNGRSLPPLFNFTDYEKTIEPD
TMPLLLPRAQGSSTTKEPSAAHRNRNTAGEESPRKTEDSQKPATAALSKS
PGPSGKALESPPGFLQHDLGNGDHVAVGTMPMEPLTLEQNHFAAESYAVG
EDAEDNLEEDVGDENDYDYDDGGQCNSTYISDDMDEASESDDDDFEEEDE
NASFLDH
BO16255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gskt-PA | 501 | CG31003-PA | 1..501 | 1..501 | 2633 | 100 | Plus |
| sgg-PG | 496 | CG2621-PG | 15..442 | 12..428 | 1401 | 61.9 | Plus |
| sgg-PC | 514 | CG2621-PC | 33..460 | 12..428 | 1401 | 61.9 | Plus |
| sgg-PF | 514 | CG2621-PF | 33..460 | 12..428 | 1401 | 61.9 | Plus |
| sgg-PE | 514 | CG2621-PE | 33..460 | 12..428 | 1401 | 61.9 | Plus |
