Clone Sequence Records
BO16260.5prime Sequence
410 bp (410 high quality bases) assembled on 2006-10-13
> BO16260.5prime
GAAGTTATCAGTCGACATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGC
TCCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAAC
GGACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCAT
GGCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCT
TGGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTG
AAGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCAT
TGGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTG
CCACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCGCAAGC
TTTCTAGACC
BO16260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4307-PA | 630 | Oscp-RA | 249..627 | 16..394 | 1895 | 100 | Plus |
CG4307-PB | 381 | Oscp-RB | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 319..697 | 16..394 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15266145..15266370 | 16..241 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 15266431..15266585 | 240..394 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:59:17 has no hits.
BO16260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:29 Download gff for
BO16260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4307-PA | 245..630 | 10..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:12 Download gff for
BO16260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 315..697 | 10..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:06 Download gff for
BO16260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 315..697 | 10..394 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:06 Download gff for
BO16260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15266141..15266370 | 10..241 | 98 | -> | Plus |
3R | 15266433..15266585 | 242..394 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:12 Download gff for
BO16260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091863..11092092 | 10..241 | 98 | -> | Plus |
arm_3R | 11092155..11092307 | 242..394 | 100 | | Plus |
BO16260.3prime Sequence
410 bp (410 high quality bases) assembled on 2006-10-13
> BO16260.3prime
ATGGTCTAGAAAGCTTGCGGCAGCGGTCTGGATGACATCGGTGTAGAGCT
TGACCTTAGTGGCAATGCTCATGTCGACGTACTTGTCGCCAATGGAAACG
ATCAGGCCACCAATGATGCTGGGGTCCACGCGGGAAGTGATCTTCAGAGA
CTCGTTGCCCTTCAGGAAAGACTTAAGGGCACCCTCCAGCTGCTTGCTCT
GGGACGCATCCAAGGGCTTGGCGGTGACCACCTCGCAGACGACCTCACCG
CGATGTGCGGCCATGATGGTCTTGTAGGCATTGATCACGGTGTCCAGCTT
CTTTAGACGTCCGTTGTCAGCCAGCAGACCCAACAGATTGACGGTGGCCG
GGGCGAAGCGGAGCTTCTCGGATGCCTCCTTCAGAGCGGTGGCCATGTCG
ACTGATAACT
BO16260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4307-PA | 630 | Oscp-RA | 249..627 | 397..19 | 1895 | 100 | Minus |
CG4307-PB | 381 | Oscp-RB | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 319..697 | 397..19 | 1895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15266145..15266370 | 397..172 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 15266431..15266585 | 173..19 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:40:46 has no hits.
BO16260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:28 Download gff for
BO16260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4307-PA | 245..630 | 18..403 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:27 Download gff for
BO16260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 315..697 | 19..403 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:19 Download gff for
BO16260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 315..697 | 19..403 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:19 Download gff for
BO16260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15266141..15266370 | 172..403 | 98 | -> | Minus |
3R | 15266433..15266585 | 19..171 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:27 Download gff for
BO16260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091863..11092092 | 172..403 | 98 | -> | Minus |
arm_3R | 11092155..11092307 | 19..171 | 100 | | Minus |
BO16260.complete Sequence
412 bp assembled on 2006-10-11
GenBank Submission: FJ633756
> BO16260.complete
GAAGTTATCAGTCGACATGGCCACCGCTCTGAAGGAGGCATCCGAGAAGC
TCCGCTTCGCCCCGGCCACCGTCAATCTGTTGGGTCTGCTGGCTGACAAC
GGACGTCTAAAGAAGCTGGACACCGTGATCAATGCCTACAAGACCATCAT
GGCCGCACATCGCGGTGAGGTCGTCTGCGAGGTGGTCACCGCCAAGCCCT
TGGATGCGTCCCAGAGCAAGCAGCTGGAGGGTGCCCTTAAGTCTTTCCTG
AAGGGCAACGAGTCTCTGAAGATCACTTCCCGCGTGGACCCCAGCATCAT
TGGTGGCCTGATCGTTTCCATTGGCGACAAGTACGTCGACATGAGCATTG
CCACTAAGGTCAAGCTCTACACCGATGTCATCCAGACCGCTGCCGCAAGC
TTTCTAGACCAT
BO16260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 630 | CG4307-PA | 249..627 | 16..394 | 1895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-RA | 802 | CG4307-RA | 319..697 | 16..394 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15266145..15266370 | 16..241 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 15266431..15266585 | 240..394 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:48:01 has no hits.
BO16260.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:15 Download gff for
BO16260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 245..630 | 10..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:28 Download gff for
BO16260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RB | 375..757 | 10..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:22 Download gff for
BO16260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 320..697 | 17..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:15 Download gff for
BO16260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RB | 375..757 | 10..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:55 Download gff for
BO16260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Oscp-RA | 320..697 | 17..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:55 Download gff for
BO16260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15266146..15266370 | 17..241 | 100 | -> | Plus |
3R | 15266433..15266585 | 242..396 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:22 Download gff for
BO16260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11091868..11092092 | 17..241 | 100 | -> | Plus |
arm_3R | 11092155..11092307 | 242..396 | 98 | | Plus |
BO16260.pep Sequence
Translation from 16 to 412
> BO16260.pep
MATALKEASEKLRFAPATVNLLGLLADNGRLKKLDTVINAYKTIMAAHRG
EVVCEVVTAKPLDASQSKQLEGALKSFLKGNESLKITSRVDPSIIGGLIV
SIGDKYVDMSIATKVKLYTDVIQTAAASFLDH
BO16260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Oscp-PA | 209 | CG4307-PA | 84..209 | 1..126 | 611 | 100 | Plus |