Clone Sequence Records
BO16261.3prime Sequence
906 bp (776 high quality bases) assembled on 2006-10-13
> BO16261.3prime
ATGGTCTAGAAAGCTTGCCTTCGGTTTGATGTTCGCCGCCAGTTCGTCGG
CGGTCGGCGTGGATGTGTCGGCTGCGGTGACAGGTTGGGGCACCGGCTGG
ACTTCTGGCTGGACCTCGACCGTCTTCGCTGTGCTCAGGCTGGGCTCGCG
CTCCTCGTCGGACTCGGTGGATTCGCGGATTAGCTGCAGGGGCGTTATCA
GCTTGCCACCGGCCACCTTGTACATATCACAGGTCTCGTTCACGTAGCGG
TTGAACACGTCCGGCTTGTCGGCATATACGTGGTGGCCGGCGCCCGTCAC
GATCTTGATGTCCACCATATTGCTGCCGCGCTGCGACTTGATCTTCTCCC
CCGACGACGAGTCGATCCACGAACGGGAGCCGTAGATGAACGTGATTGGT
ATGTCGCTGCGCACGTCCTTGATGCGGTGAATCATGGGGTGCTTGGCCCA
TCCAAAGGATTGCATCATTGTGTGGAAGGCGGACTCACCGCTGGGATTCT
GCGCATTGCACTGGTGTATGTACTGCGGCAGCAAGTTGATATCCTCCTCG
ATGGTGCTCTGGAACTTTCGCATAATGTCTGGCCGCGTCTTTTGCACCAC
CCACTGGCCAAAGGGTCCGGCGGCGCGGAGAGCCCACAACGGATTTAGCG
GGGTCAGTACTCTAGCTATGGCCCGCACCCAGAGCGGTATTGTTTTGCCG
TTGGTCGAATCCGAGGGCTTCTCGGGGAAGCCCCAGGGATCGGCCAGTAT
GAGGTGTTTCACACGCTCCGGATGTGAGAGGGCGTAGCTGGAGGCAATGA
AGCCGCCCATCGAGTGGCCCAACAGAATCATGTCGTTGATGTTCTTCTCG
CGCCGCCACTCCTCCACCGATTTCACAATTGCTTCTCGCACACCACCGCA
TCCTTG
BO16261.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-PA | 1365 | CG1882-RA | 503..1362 | 878..19 | 4250 | 99.7 | Minus |
| CG1882-PC | 1164 | CG1882-RC | 302..1161 | 878..19 | 4250 | 99.7 | Minus |
| CG1882-PD | 1164 | CG1882-RD | 302..1161 | 878..19 | 4250 | 99.7 | Minus |
| CG1882-PB | 1164 | CG1882-RB | 302..1161 | 878..19 | 4250 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-RG | 2695 | CG1882-RG | 828..1716 | 906..19 | 4375 | 99.6 | Minus |
| CG1882-RF | 1756 | CG1882-RF | 630..1518 | 906..19 | 4375 | 99.6 | Minus |
| CG1882-RE | 1668 | CG1882-RE | 542..1430 | 906..19 | 4375 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7813619..7814507 | 906..19 | 4350 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:08:13 has no hits.
BO16261.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:29 Download gff for
BO16261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-PB | 273..1164 | 16..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:23:21 Download gff for
BO16261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RB | 459..1352 | 13..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:19 Download gff for
BO16261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RE | 542..1435 | 13..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:19 Download gff for
BO16261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7813619..7814512 | 13..906 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:23:21 Download gff for
BO16261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3701124..3702017 | 13..906 | 99 | | Minus |
BO16261.5prime Sequence
839 bp (797 high quality bases) assembled on 2006-10-13
> BO16261.5prime
GAAGTTATCAGTCGACATGCTGCGTGCCGTGGAGAAGAAGATACTGTCGT
ACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGTG
GGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGGA
GGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGGG
TGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGAC
ATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGCT
GGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAGA
TGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCATT
GCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATACT
GGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGCA
AAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCTA
AATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGGT
GCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAGG
AGGATATCAACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAAT
CCCAGCGGTGAGTCCGCCTTCCACACAATGATGNCATCCTTTGGATGGGC
CAAGCACCCCATGATTCACCGCATCAAGGACGTGCGCAGCGACATACCAA
TCACGTTCATCTACGGCTCCCGTTCGTGGATCGACTCGT
BO16261.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-PA | 1365 | CG1882-RA | 202..1024 | 17..839 | 4046 | 99.6 | Plus |
| CG1882-PC | 1164 | CG1882-RC | 1..823 | 17..839 | 4046 | 99.6 | Plus |
| CG1882-PD | 1164 | CG1882-RD | 1..823 | 17..839 | 4046 | 99.6 | Plus |
| CG1882-PB | 1164 | CG1882-RB | 1..823 | 17..839 | 4046 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-RG | 2695 | CG1882-RG | 556..1378 | 17..839 | 4074 | 99.6 | Plus |
| CG1882-RF | 1756 | CG1882-RF | 358..1180 | 17..839 | 4074 | 99.6 | Plus |
| CG1882-RE | 1668 | CG1882-RE | 270..1092 | 17..839 | 4074 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7813347..7814169 | 17..839 | 4074 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:32:11 has no hits.
BO16261.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:31 Download gff for
BO16261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-PB | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:41 Download gff for
BO16261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RB | 178..1009 | 8..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:09 Download gff for
BO16261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RE | 261..1092 | 8..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:09 Download gff for
BO16261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7813338..7814169 | 8..839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:41 Download gff for
BO16261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3700843..3701674 | 8..839 | 99 | | Plus |
BO16261.complete Sequence
1195 bp assembled on 2006-10-11
GenBank Submission: FJ633757
> BO16261.complete
GAAGTTATCAGTCGACATGCTGCGTGCCGTGGAGAAGAAGATACTGTCGT
ACGTGAAGCTGCCCTACCGCGGCTTCTTCGTGGATATCGGGCCGGCGGTG
GGCGAAGCGGATAAGATCTGGACCATCAGCATGAATACCGAGTCCAAGGA
GGTGCCGCTGGTGCTCCTGCATGGCCTGGGCGCAGGCATTGCCCTGTGGG
TGATGAACCTCGATGCCTTTGCCAAGGGCCGACCAGTATACGCCATGGAC
ATCCTCGGATTCGGTCGCAGCTCTCGGCCGCTGTTCGCCAAGGATGCGCT
GGTGTGCGAGAAGCAATTTGTGAAATCGGTGGAGGAGTGGCGGCGCGAGA
TGAACATCAACGACATGATTCTGTTGGGCCACTCGATGGGCGGCTTCATT
GCCTCCAGCTACGCCCTCTCACATCCGGAGCGTGTGAAACACCTCATACT
GGCCGATCCCTGGGGCTTCCCCGAGAAGCCCTCGGATTCGACCAACGGCA
AAACAATACCGCTCTGGGTGCGGGCCATAGCTAGAGTACTGACCCCGCTA
AATCCGTTGTGGGCTCTCCGCGCCGCCGGACCCTTTGGCCAGTGGGTGGT
GCAAAAGACGCGGCCAGACATTATGCGAAAGTTCCAGAGCACCATCGAGG
AGGATATCAACTTGCTGCCGCAGTACATACACCAGTGCAATGCGCAGAAT
CCCAGCGGTGAGTCCGCCTTCCACACAATGATGCAATCCTTTGGATGGGC
CAAGCACCCCATGATTCACCGCATCAAGGACGTGCGCAGCGACATACCAA
TCACGTTCATCTACGGCTCCCGTTCGTGGATCGACTCGTCGTCGGGGGAG
AAGATCAAGTCGCAGCGCGGCAGCAATATGGTGGACATCAAGATCGTGAC
GGGCGCCGGCCACCACGTATATGCCGACAAGCCGGACGTGTTCAACCGCT
ACGTGAACGAGACCTGTGATATGTACAAGGTGGCCGGTGGCAAGCTGATA
ACGCCCCTGCAGCTAATCCGCGAATCCACCGAGTCCGACGAGGAGCGCGA
GCCCAGCCTGAGCACAGCGAAGACGGTCGAGGTCCAGCCAGAAGTCCAGC
CGGTGCCCCAACCTGTCACCGCAGCCGACACATCCACGCCGACCGCCGAC
GAACTGGCGGCGAACATCAAACCGAAGGCAAGCTTTCTAGACCAT
BO16261.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-RG | 1365 | CG1882-PG | 202..1362 | 17..1177 | 5790 | 99.9 | Plus |
| CG1882-RF | 1365 | CG1882-PF | 202..1362 | 17..1177 | 5790 | 99.9 | Plus |
| CG1882-RE | 1164 | CG1882-PE | 1..1161 | 17..1177 | 5790 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-RG | 2695 | CG1882-RG | 556..1716 | 17..1177 | 5790 | 99.9 | Plus |
| CG1882-RF | 1756 | CG1882-RF | 358..1518 | 17..1177 | 5790 | 99.9 | Plus |
| CG1882-RE | 1668 | CG1882-RE | 270..1430 | 17..1177 | 5790 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7813347..7814507 | 17..1177 | 5790 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:26:06 has no hits.
BO16261.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:32 Download gff for
BO16261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RD | 1..1164 | 17..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:46 Download gff for
BO16261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RD | 285..1459 | 8..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:25 Download gff for
BO16261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RB | 187..1347 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:32 Download gff for
BO16261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RD | 285..1459 | 8..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:28 Download gff for
BO16261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RE | 270..1430 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:28 Download gff for
BO16261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7813347..7814507 | 17..1179 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:25 Download gff for
BO16261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3700852..3702012 | 17..1179 | 99 | | Plus |
BO16261.pep Sequence
Translation from 16 to 1195
> BO16261.pep
MLRAVEKKILSYVKLPYRGFFVDIGPAVGEADKIWTISMNTESKEVPLVL
LHGLGAGIALWVMNLDAFAKGRPVYAMDILGFGRSSRPLFAKDALVCEKQ
FVKSVEEWRREMNINDMILLGHSMGGFIASSYALSHPERVKHLILADPWG
FPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWALRAAGPFGQWVVQKTRP
DIMRKFQSTIEEDINLLPQYIHQCNAQNPSGESAFHTMMQSFGWAKHPMI
HRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQRGSNMVDIKIVTGAGHH
VYADKPDVFNRYVNETCDMYKVAGGKLITPLQLIRESTESDEEREPSLST
AKTVEVQPEVQPVPQPVTAADTSTPTADELAANIKPKASFLDH
BO16261.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-PE | 387 | CG1882-PE | 1..387 | 1..387 | 2031 | 100 | Plus |
| CG1882-PB | 387 | CG1882-PB | 1..387 | 1..387 | 2031 | 100 | Plus |
| CG1882-PD | 387 | CG1882-PD | 1..387 | 1..387 | 2031 | 100 | Plus |
| CG1882-PC | 387 | CG1882-PC | 1..387 | 1..387 | 2031 | 100 | Plus |
| CG1882-PG | 454 | CG1882-PG | 68..454 | 1..387 | 2031 | 100 | Plus |
