Clone Sequence Records
BO16265.3prime Sequence
912 bp (823 high quality bases) assembled on 2006-10-13
> BO16265.3prime
ATGGTCTAGAAAGCTTGCGGCAGCTACCGATTCGGAATCGTTGTAGTTAT
CCGAAACATAACCGTCGTTGGCATCATTTTCGCCATCGGAGTTCCATTTG
AGGCCATCTCCTTTGGTTGGTGTCCCATCCACGGCACGGTCCTCGTCGTT
CGACTCCTTCTTGGAGTTGTGTTGGCCCTGATCGGCGGAATCAGCATCAT
CTGCATCGTCATCAATATTTTTCGCTGGGCGACTACGGGGCTTTGTTGTT
TCCTCTTTGGACACCTTGCCAGCGGCAAGAGAGGGACGTCCACGTTTCTT
CGGCGCCACTACCGTCTTCTCAGGCGAGCTGTGTTCCTCCTCCCCGGAGT
TCTCATCGTCCTGATCGTCGTCATTGTCCTCGTGCTTCTCGACGGGTGCA
GCATTGGCCTTTGGACGACCGCGCGGACGACCGGTGGGTACGTAGCCAGT
ACTGCCACCGCTACCCGACTTGTTCTGTGGTGGACGACCGCGTTTCTTGG
GCACTTGTGGCTCCCCATCGCCATTGGACTCGACAGCCCGCTTCTTGGGT
CTTCCCAGGCCGCGTCCCGTGCGCGATATGTTCAGGTTGACGGATCCAGC
CGACGGTCGGCCCACTGGGCGACGTTCTTCGATGCTGCTGTTGCCGTCGT
CGTCCTCATCCTGATCGTCTTCATTCTCGCTATCGCTGGGCTGGTGCTTC
TTGGGCCTGCCGGCCTTGCGCTTCTTGGCGGAACCGGGCGTCTTCACCGA
ATCCCCGGATCCTGATCCGGCGCCACCACTGCTCTTGGGTCGTCCCCTGC
CCTTCGTCGGCGAGGGTGATGAGTTTGTTGCAAGCTCAGCGCCGGAGCCA
TCGCCATCGCCGTCCTCCTCCCCTCGTCTTCGGGATCTTCGTCATTTTGG
ATTTTTGACGCC
BO16265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9745-PC | 1068 | D1-RC | 211..1065 | 873..19 | 4225 | 99.7 | Minus |
| CG9745-PA | 1068 | D1-RA | 211..1065 | 873..19 | 4225 | 99.7 | Minus |
| CG9745-PB | 1068 | D1-RB | 211..1065 | 873..19 | 4225 | 99.7 | Minus |
| CG9745-PC | 1068 | D1-RC | 171..213 | 912..870 | 215 | 100 | Minus |
| CG9745-PA | 1068 | D1-RA | 171..213 | 912..870 | 215 | 100 | Minus |
| CG9745-PB | 1068 | D1-RB | 171..213 | 912..870 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D1-RD | 1597 | CG9745-RD | 264..1158 | 912..19 | 4420 | 99.7 | Minus |
| D1-RA | 1734 | CG9745-RA | 401..1295 | 912..19 | 4420 | 99.7 | Minus |
| D1-RC | 1811 | CG9745-RC | 478..1372 | 912..19 | 4420 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9238522..9239173 | 19..670 | 3260 | 100 | Plus |
| 3R | 32079331 | 3R | 9239490..9239734 | 669..912 | 1145 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:08:06 has no hits.
BO16265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:36 Download gff for
BO16265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9745-PB | 171..1068 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:02 Download gff for
BO16265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 478..1375 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:48 Download gff for
BO16265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 478..1375 | 15..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:48 Download gff for
BO16265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9238518..9239171 | 15..668 | 99 | <- | Plus |
| 3R | 9239490..9239734 | 669..912 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:02 Download gff for
BO16265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5064240..5064893 | 15..668 | 99 | <- | Plus |
| arm_3R | 5065212..5065456 | 669..912 | 98 | | Plus |
BO16265.5prime Sequence
800 bp (758 high quality bases) assembled on 2006-10-13
> BO16265.5prime
GAAGTTATCAGTCGACATGGAGGAAGTTGCGGTAAAGAAGCGCGGCCGAC
CGTCAAAGGCATCCGTCGGTGGTAAATCTTCAACAGCGGCGGTTGCAGCA
ATCTCGCCAGGCATCAAAAAGCGCGGTCGTCCCGCCAAGAACAAGGGCTC
CAGTGGCGGTGGTGGACAGCGGGGTCGCCCACCGAAGGCGTCAAAAATCC
AAAATGACGAAGATCCCGAAGACGAGGGGGAGGAGGACGGCGATGGCGAT
GGCTCCGGCGCTGAGCTTGCAAACAACTCATCACCCTCGCCGACGAAGGG
CAGGGGACGACCCAAGAGCAGTGGTGGCGCCGGATCAGGATCCGGGGATT
CGGTGAAGACGCCCGGTTCCGCCAAGAAGCGCAAGGCCGGCAGGCCCAAG
AAGCACCAGCCCAGCGATAGCGAGAATGAAGACGATCAGGATGAGGACGA
CGACGGCAACAGCAGCATCGAAGAACGTCGCCCAGTGGGCCGACCGTCGG
CTGGATCCGTCAACCTGAACATATCGCGCACGGGACGCGGCCTGGGAAGA
CCCAAGAAGCGGGCTGTCGAGTCCAATGGCGATGGGGAGCCACAAGTGCC
CAAGAAACGCGGTCGTCCACCACAGAACAAGTCGGGTAGCGGTGGCAGTA
CTGGCTACGTACCCACCGGTCGTCCGCGCGGTCGTCCAAAGGCCAATGCT
GCACCCGTCGAGAAGCACGAGGACAATGACGACGATCAGGACGATGAGAA
CTCCGGGGAGGAGGAACACAGCTCGCCTGAGAAGACGGTAGTGGCGCCGA
BO16265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9745-PC | 1068 | D1-RC | 1..784 | 17..800 | 3920 | 100 | Plus |
| CG9745-PA | 1068 | D1-RA | 1..784 | 17..800 | 3920 | 100 | Plus |
| CG9745-PB | 1068 | D1-RB | 1..784 | 17..800 | 3920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D1-RD | 1597 | CG9745-RD | 94..877 | 17..800 | 3920 | 100 | Plus |
| D1-RA | 1734 | CG9745-RA | 231..1014 | 17..800 | 3920 | 100 | Plus |
| D1-RC | 1811 | CG9745-RC | 308..1091 | 17..800 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9239490..9239904 | 431..17 | 2075 | 100 | Minus |
| 3R | 32079331 | 3R | 9238803..9239173 | 800..430 | 1855 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:00:00 has no hits.
BO16265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:37 Download gff for
BO16265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9745-PB | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:25 Download gff for
BO16265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 299..1090 | 6..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:25 Download gff for
BO16265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 299..1090 | 6..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:25 Download gff for
BO16265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9238804..9239171 | 432..799 | 100 | <- | Minus |
| 3R | 9239490..9239913 | 6..431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:25 Download gff for
BO16265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5064526..5064893 | 432..799 | 100 | <- | Minus |
| arm_3R | 5065212..5065635 | 6..431 | 99 | | Minus |
BO16265.complete Sequence
1099 bp assembled on 2006-10-11
GenBank Submission: FJ633759
> BO16265.complete
GAAGTTATCAGTCGACATGGAGGAAGTTGCGGTAAAGAAGCGCGGCCGAC
CGTCAAAGGCATCCGTCGGTGGTAAATCTTCAACAGCGGCGGTTGCAGCA
ATCTCGCCAGGCATCAAAAAGCGCGGTCGTCCCGCCAAGAACAAGGGCTC
CAGTGGCGGTGGTGGACAGCGGGGTCGCCCACCGAAGGCGTCAAAAATCC
AAAATGACGAAGATCCCGAAGACGAGGGGGAGGAGGACGGCGATGGCGAT
GGCTCCGGCGCTGAGCTTGCAAACAACTCATCACCCTCGCCGACGAAGGG
CAGGGGACGACCCAAGAGCAGTGGTGGCGCCGGATCAGGATCCGGGGATT
CGGTGAAGACGCCCGGTTCCGCCAAGAAGCGCAAGGCCGGCAGGCCCAAG
AAGCACCAGCCCAGCGATAGCGAGAATGAAGACGATCAGGATGAGGACGA
CGACGGCAACAGCAGCATCGAAGAACGTCGCCCAGTGGGCCGACCGTCGG
CTGGATCCGTCAACCTGAACATATCGCGCACGGGACGCGGCCTGGGAAGA
CCCAAGAAGCGGGCTGTCGAGTCCAATGGCGATGGGGAGCCACAAGTGCC
CAAGAAACGCGGTCGTCCACCACAGAACAAGTCGGGTAGCGGTGGCAGTA
CTGGCTACGTACCCACCGGTCGTCCGCGCGGTCGTCCAAAGGCCAATGCT
GCACCCGTCGAGAAGCACGAGGACAATGACGACGATCAGGACGATGAGAA
CTCCGGGGAGGAGGAACACAGCTCGCCTGAGAAGACGGTAGTGGCGCCGA
AGAAACGTGGACGTCCCTCTCTTGCCGCTGGCAAGGTGTCCAAAGAGGAA
ACAACAAAGCCCCGTAGTCGCCCAGCGAAAAATATTGATGACGATGCAGA
TGATGCTGATTCCGCCGATCAGGGCCAACACAACTCCAAGAAGGAGTCGA
ACGACGAGGACCGTGCCGTGGATGGGACACCAACCAAAGGAGATGGCCTC
AAATGGAACTCCGATGGCGAAAATGATGCCAACGACGGTTATGTTTCGGA
TAACTACAACGATTCCGAATCGGTAGCTGCCGCAAGCTTTCTAGACCAT
BO16265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D1-RD | 1068 | CG9745-PD | 1..1065 | 17..1081 | 5325 | 100 | Plus |
| D1-RA | 1068 | CG9745-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
| D1-RC | 1068 | CG9745-PC | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D1-RD | 1597 | CG9745-RD | 94..1158 | 17..1081 | 5325 | 100 | Plus |
| D1-RA | 1734 | CG9745-RA | 231..1295 | 17..1081 | 5325 | 100 | Plus |
| D1-RC | 1811 | CG9745-RC | 308..1372 | 17..1081 | 5325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9238522..9239173 | 1081..430 | 3260 | 100 | Minus |
| 3R | 32079331 | 3R | 9239490..9239904 | 431..17 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:58:49 has no hits.
BO16265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:59 Download gff for
BO16265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RB | 1..1068 | 17..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:24 Download gff for
BO16265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RB | 43..1116 | 10..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:15 Download gff for
BO16265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 308..1372 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:00 Download gff for
BO16265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RB | 43..1116 | 10..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:12 Download gff for
BO16265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D1-RC | 308..1372 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:12 Download gff for
BO16265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9238520..9239171 | 432..1083 | 99 | <- | Minus |
| 3R | 9239490..9239904 | 17..431 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:15 Download gff for
BO16265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5064242..5064893 | 432..1083 | 99 | <- | Minus |
| arm_3R | 5065212..5065626 | 17..431 | 100 | | Minus |
BO16265.pep Sequence
Translation from 16 to 1099
> BO16265.pep
MEEVAVKKRGRPSKASVGGKSSTAAVAAISPGIKKRGRPAKNKGSSGGGG
QRGRPPKASKIQNDEDPEDEGEEDGDGDGSGAELANNSSPSPTKGRGRPK
SSGGAGSGSGDSVKTPGSAKKRKAGRPKKHQPSDSENEDDQDEDDDGNSS
IEERRPVGRPSAGSVNLNISRTGRGLGRPKKRAVESNGDGEPQVPKKRGR
PPQNKSGSGGSTGYVPTGRPRGRPKANAAPVEKHEDNDDDQDDENSGEEE
HSSPEKTVVAPKKRGRPSLAAGKVSKEETTKPRSRPAKNIDDDADDADSA
DQGQHNSKKESNDEDRAVDGTPTKGDGLKWNSDGENDANDGYVSDNYNDS
ESVAAASFLDH
BO16265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D1-PD | 355 | CG9745-PD | 1..355 | 1..355 | 1865 | 100 | Plus |
| D1-PA | 355 | CG9745-PA | 1..355 | 1..355 | 1865 | 100 | Plus |
| D1-PC | 355 | CG9745-PC | 1..355 | 1..355 | 1865 | 100 | Plus |
| Dek-PD | 612 | CG5935-PD | 326..601 | 69..309 | 192 | 28.2 | Plus |
| Dek-PE | 663 | CG5935-PE | 326..601 | 69..309 | 192 | 28.2 | Plus |
