Clone Sequence Records
BO16266.3prime Sequence
898 bp (740 high quality bases) assembled on 2006-10-13
> BO16266.3prime
ATGGTCTAGAAAGCTTGCGCGGTGGCGACGGATGTGGCTGGAGGCCACAG
ACTGACCCTGCTGCCGCAGCCGGCACAACTCGTCGGTACTGTAGTTCAGC
TTGCGGGTTGCGTTTTCTGAGAAACGCTCGAACTTGGCCACTAGGTCCAC
CAGTTGCGTCTTGATCGCCTGCACCTCGGCGAGCACTGCGCTTAGGACAT
TAGCCTGATTCTTCATCTGTACTGTTCCCTCCGCCTCCTGGCGGAACTGC
TGCGGCACATTTGTAGCGGATCGGGGGCGCAAAAGCTCGTGCATGTGAAA
TAAATTCTGTGGAGTCTTCTTTGTGGTCCCCGTGGCAGGTTCTGGCTTGA
GGAAATCCGTGTGGAGCGGCTGCTGCTGACGCTGTAGACTGCGGCTGAAA
ATGTTGTAGTTGTTTTCGAACTGGCGCCGTCGGAGGCTCTGGTTTCTGTC
GCGCCGTTCAGCCACTAGCTTATAGACATTTAACTTAATATCCTCAGGCA
ACTGATTGTCCCGGGGGTCGTTGGGCCGTATAGTGAACTGAAGTTTGTCC
CGGGACGTGCGCAAAAGAGCACTCCTCTTACACAGCTGAATGAGGTTAGT
GGGCGCACTTCGCAGTAGGCGGGAGAAAAATAGGCTTTCCAAGCGTGACA
CCAGCTCCGCTTGGCGCACGAGACGATCGAGCGTGGCGCTCACTTGCAAT
CCTTGTATGTCGCTTACGGCCAATCCCACCATGAGATTGGTTAAAATTAC
CGTAACAAGAAGCACGAAAGAGAGAAATATGATGTGAGCGGTGACAGGGA
ATTTGACGGCATAGTCCCCATAGAATATGTCTTCAAACTCCAGTTCCCCA
GACATCATCGTGATGGACTTCAAAAAGGACATGTGATGTTCTCAAGGC
BO16266.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17142-PA | 2871 | pyx-RA | 2007..2868 | 880..19 | 4285 | 99.8 | Minus |
| CG17142-PB | 1617 | pyx-RB | 753..1614 | 880..19 | 4285 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RB | 2502 | CG17142-RB | 985..1862 | 895..19 | 4350 | 99.8 | Minus |
| pyx-RA | 3966 | CG17142-RA | 2449..3326 | 895..19 | 4350 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 218672..219549 | 19..895 | 4325 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:18:08 has no hits.
BO16266.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:37 Download gff for
BO16266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17142-PB | 733..1617 | 15..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:11 Download gff for
BO16266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 2445..3335 | 7..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:05 Download gff for
BO16266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 2445..3335 | 7..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:05 Download gff for
BO16266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 218663..219553 | 7..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:11 Download gff for
BO16266.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 218663..219553 | 7..898 | 99 | | Plus |
BO16266.5prime Sequence
866 bp (797 high quality bases) assembled on 2006-10-13
> BO16266.5prime
GAAGTTATCAGTCGACATGCAAAAGCTGGACTCTTCGATAAAGGCGAACG
ACCAGGAAATCGGCGACGTTGACTGTCAGATAAAGCTAGACTTCCGGCTT
TTGGTACCCAGTTCCTCGATGGATCGGGGAGAAACCGAGCTACTACTTTC
CCTTATAGAAGTGGGACAGAAGCGCATTCTCATGCACCCGCTTTGCGAAA
CTTTCCTCTTTCTTAAGTGGCGTCGCATTCGGAAATTCTTCCTTATGAGC
CTTGCGTATCATACGCTTTTCGTGATCCTTTTCACTTTCTATGTAATTTG
GGTGTATGTCCGCTGCTGCAAGAAGGAGGAGTTGTGCGTGGCTCCAGGTT
ACGTTTCAACTATTGGATATCTGGTGATCATACTAAACCTCATTCTGCTG
GGGAAAGAGGTCTTTCAAATGGCACACGGACTTCGTGGCTACGCAAAATA
TTGGGAGAACTGGCTGCAATGGACCATTGGAACCGGTGTGCTCCTATGTG
TAACACCGGAGACCGTGCGAACTGACGATTTAACGGCAGTGCCGGTGTGG
CAACATCACGTGGCAGCTATAGTGATATTGCTCGTCTGGCTGGAACTAAT
GATGTTGGTGGGACGATTCCCCATATTTGGCGTATATGTTCAAATGTTCA
CAAAGGTGGCCGTTAACTTTGCGAAATTCTTGCTTGCCTACATATGCCTG
CTGGTGGCTTTTGGCCTCAGCTTTGCCGTGCTCTTCAATGATTATCCTGC
CTTTGAGAACATCACATGGTCCTTTTTGAAGTCCATCACGATGATGTCTG
GGGAACTGGAGTTTGAAGACATATTCTATGGGGACTATGCCGTCAAATTC
TCTGTCACCGCTCACA
BO16266.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17142-PA | 2871 | pyx-RA | 1255..2104 | 17..866 | 4225 | 99.8 | Plus |
| CG17142-PB | 1617 | pyx-RB | 1..850 | 17..866 | 4225 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RB | 2502 | CG17142-RB | 249..1098 | 17..866 | 4235 | 99.9 | Plus |
| pyx-RA | 3966 | CG17142-RA | 1713..2562 | 17..866 | 4235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 219713..220352 | 656..17 | 3200 | 100 | Minus |
| 3L | 28110227 | 3L | 219436..219646 | 866..656 | 1040 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:00:00 has no hits.
BO16266.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:38 Download gff for
BO16266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17142-PB | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:51 Download gff for
BO16266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..2561 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:24 Download gff for
BO16266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..2561 | 17..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:24 Download gff for
BO16266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 219437..219645 | 657..865 | 99 | <- | Minus |
| 3L | 219713..220352 | 17..656 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:51 Download gff for
BO16266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 219437..219645 | 657..865 | 99 | <- | Minus |
| arm_3L | 219713..220352 | 17..656 | 100 | | Minus |
BO16266.complete Sequence
1648 bp assembled on 2006-10-11
GenBank Submission: FJ633760
> BO16266.complete
GAAGTTATCAGTCGACATGCAAAAGCTGGACTCTTCGATAAAGGCGAACG
ACCAGGAAATCGGCGACGTTGACTGTCAGATAAAGCTAGACTTCCGGCTT
TTGGTACCCAGTTCCTCGATGGATCGGGGAGAAACCGAGCTACTACTTTC
CCTTATAGAAGTGGGACAGAAGCGCATTCTCATGCACCCGCTTTGCGAAA
CTTTCCTCTTTCTTAAGTGGCGTCGCATTCGGAAATTCTTCCTTATGAGC
CTTGCGTATCATACGCTTTTCGTGATCCTTTTCACTTTCTATGTAATTTG
GGTGTATGTCCGCTGCTGCAAGAAGGAGGAGTTGTGCGTGGCTCCAGGTT
ACGTTTCAACTATTGGATATCTGGTGATCATACTAAACCTCATTCTGCTG
GGGAAAGAGGTCTTTCAAATGGCACACGGACTTCGTGGCTACGCAAAATA
TTGGGAGAACTGGCTGCAATGGACCATTGGAACCGGTGTGCTCCTATGTG
TAACACCGGAGACCGTGCGAACTGACGATTTAACGGCAGTGCCGGTGTGG
CAACATCACGTGGCAGCTATAGTGATATTGCTCGTCTGGCTGGAACTAAT
GATGTTGGTGGGACGATTCCCCATATTTGGCGTATATGTTCAAATGTTCA
CAAAGGTGGCCGTTAACTTTGCGAAATTCTTGCTTGCCTACATATGCCTG
CTGGTGGCTTTTGGCCTCAGCTTTGCCGTGCTCTTCAATGATTATCCTGC
CTTTGAGAACATCACATGGTCCTTTTTGAAGTCCATCACGATGATGTCTG
GGGAACTGGAGTTTGAAGACATATTCTATGGGGACTATGCCGTCAAATTC
CCTGTCACCGCTCACATCATATTTCTCTCTTTCGTGCTTCTTGTTACGGT
AATTTTAACCAATCTCATGGTGGGATTGGCCGTAAGCGACATACAAGGAT
TGCAAGTGAGCGCCACGCTCGATCGTCTCGTGCGCCAAGCGGAGCTGGTG
TCACGCTTGGAAAGCCTATTTTTCTCCCGCCTACTGCGAAGTGCGCCCAC
TAACCTCATTCAGCTGTGTAAGAGGAGTGCTCTTTTGCGCACGTCCCGGG
ACAAACTTCAGTTCACTATACGGCCCAACGACCCCCGGGACAATCAGTTG
CCTGAGGATATTAAGTTAAATGTCTATAAGCTAGTGGCTGAACGGCGCGA
CAGAAACCAGAGCCTCCGACGGCGCCAGTTCGAAAACAACTACAACATTT
TCAGCCGCAGTCTACAGCGTCAGCAGCAGCCGCTCCACACGGATTTCCTC
AAGCCAGAACCTGCCACGGGGACCACAAAGAAGACTCCACAGAATTTATT
TCACATGCACGAGCTTTTGCGCCCCCGATCCGCTACAAATGTGCCGCAGC
AGTTCCGCCAGGAGGCGGAGGGAACAGTACAGATGAAGAATCAGGCTAAT
GTCCTAAGCGCAGTGCTCGCCGAGGTGCAGGCGATCAAGACGCAACTGGT
GGACCTAGTGGCCAAGTTCGAGCGTTTCTCAGAAAACGCAACCCGCAAGC
TGAACTACAGTACCGACGAGTTGTGCCGGCTGCGGCAGCAGGGTCAGTCT
GTGGCCTCCAGCCACATCCGTCGCCACCGCGCAAGCTTTCTAGACCAT
BO16266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RB | 1617 | CG17142-PB | 1..1614 | 17..1630 | 8055 | 99.9 | Plus |
| pyx-RA | 2871 | CG17142-PA | 1255..2868 | 17..1630 | 8055 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-RB | 2502 | CG17142-RB | 249..1862 | 17..1630 | 8055 | 99.9 | Plus |
| pyx-RA | 3966 | CG17142-RA | 1713..3326 | 17..1630 | 8055 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 218672..219646 | 1630..656 | 4860 | 99.9 | Minus |
| 3L | 28110227 | 3L | 219713..220352 | 656..17 | 3200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:58:02 has no hits.
BO16266.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:06 Download gff for
BO16266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RB | 1..1617 | 17..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:26 Download gff for
BO16266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RB | 249..1871 | 17..1642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:23 Download gff for
BO16266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..3326 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:07 Download gff for
BO16266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RB | 249..1871 | 17..1642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:23 Download gff for
BO16266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyx-RA | 1713..3326 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:23 Download gff for
BO16266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 218670..219645 | 657..1632 | 99 | <- | Minus |
| 3L | 219713..220352 | 17..656 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:23 Download gff for
BO16266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 218670..219645 | 657..1632 | 99 | <- | Minus |
| arm_3L | 219713..220352 | 17..656 | 100 | | Minus |
BO16266.pep Sequence
Translation from 16 to 1648
> BO16266.pep
MQKLDSSIKANDQEIGDVDCQIKLDFRLLVPSSSMDRGETELLLSLIEVG
QKRILMHPLCETFLFLKWRRIRKFFLMSLAYHTLFVILFTFYVIWVYVRC
CKKEELCVAPGYVSTIGYLVIILNLILLGKEVFQMAHGLRGYAKYWENWL
QWTIGTGVLLCVTPETVRTDDLTAVPVWQHHVAAIVILLVWLELMMLVGR
FPIFGVYVQMFTKVAVNFAKFLLAYICLLVAFGLSFAVLFNDYPAFENIT
WSFLKSITMMSGELEFEDIFYGDYAVKFPVTAHIIFLSFVLLVTVILTNL
MVGLAVSDIQGLQVSATLDRLVRQAELVSRLESLFFSRLLRSAPTNLIQL
CKRSALLRTSRDKLQFTIRPNDPRDNQLPEDIKLNVYKLVAERRDRNQSL
RRRQFENNYNIFSRSLQRQQQPLHTDFLKPEPATGTTKKTPQNLFHMHEL
LRPRSATNVPQQFRQEAEGTVQMKNQANVLSAVLAEVQAIKTQLVDLVAK
FERFSENATRKLNYSTDELCRLRQQGQSVASSHIRRHRASFLDH
BO16266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyx-PB | 538 | CG17142-PB | 1..538 | 1..538 | 2754 | 100 | Plus |
| pyx-PA | 956 | CG17142-PA | 419..956 | 1..538 | 2754 | 100 | Plus |
| wtrw-PD | 969 | CG31284-PD | 459..884 | 2..409 | 558 | 32 | Plus |
| wtrw-PC | 986 | CG31284-PC | 476..901 | 2..409 | 558 | 32 | Plus |
| wtrw-PB | 986 | CG31284-PB | 476..901 | 2..409 | 558 | 32 | Plus |
