Clone Sequence Records
BO16267.3prime Sequence
926 bp (858 high quality bases) assembled on 2006-10-13
> BO16267.3prime
ATGGTCTAGAAAGCTTGCGTAGGCGTAATCCAGATTGGCCACCTCGGGCA
GCACTGTAAGATTCTTGTGCACCTCCAGCCAGCGCTTCGCATCGTATGTG
GTCTTGGCGTAGGTGCGTCCGAACTTGTACGTCTCCCCAGGAACATGACC
CGCATAGTTGGGCACCATTCCGCTGTCCTCGTGATAGACGACGAAGTGTC
CCACGGGCGGGCAGGTGATGGACGGCCGGCTGAGATCCTGTCCACAACAC
CACGTATCCCGCTTCCGCTTGTACATATAGTCCGAGAAGCTGCACAGTGC
CCGGTTGGTCAGCACCTTGTTGGACTCCCCGAATCGGGTCACTGACATGG
GAATGTGGCCGGAGTAACCATTGATTATGAACTTGTCGGCATCTTCATCC
TCCAGGAAGTGCGGCGATGTGAACTTGCTATAGCAGAGTTTCTCCGTTTT
CGGCGGACAAGTCTCGTCCTTAATGCCCTTGGACACTCCGGTCACCAGGA
TCAGGGGCGATCGGTAGTAGGTTTGTGGCAGCAGTCTTTCGTTGATCTTG
CGGTCGAAGAGTCCGTTCCCACTCTCCAGTAGATCCCGATGCCTGAGCGT
CCGATTCTCGCACCGATACAACTCCATCAGCGTCTCATGCCGAGCCACTC
CAGCGGATGCGGCAGCAACATATCGCTTGCCAATCTGACTCACTTTGTTC
GGGACAAATCCGGCGTAGCCTGGTAATATGGGATGTCGGTAAACGGAGTC
CACCAAACCCTCACGAGTGCGCAGAATCTTCAGCTCCTGCTCTGTGAGAT
AGTCCTTGAGGCCGCGCTTGGCATGAATGGGAGCCACTATCAGTTCGGGA
GCGTGGTAAATACAGGGGTCTATTAACAGCTTGTGCGTCTGACGGGCCAT
AGTTCGACCCACTCGGTCGCGATTCT
BO16267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-PA | 972 | CG18335-RA | 93..969 | 895..19 | 4310 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-RA | 1346 | CG18335-RA | 226..1133 | 926..19 | 4450 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11289901..11290808 | 19..926 | 4435 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:51:44 has no hits.
BO16267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:39 Download gff for
BO16267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-PA | 62..972 | 16..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:59 Download gff for
BO16267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 226..1138 | 14..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:39 Download gff for
BO16267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 226..1138 | 14..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:39 Download gff for
BO16267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11289896..11290808 | 14..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:59 Download gff for
BO16267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7177401..7178313 | 14..926 | 99 | | Plus |
BO16267.5prime Sequence
866 bp (824 high quality bases) assembled on 2006-10-13
> BO16267.5prime
GAAGTTATCAGTCGACATGGACCACGCTATAACGCCGGAACCGCACTTGG
TGCCAGGTTACACGGGTCACTGCGCCCAGAATCGCGACCGAGTGGGTCGA
ACTTATGGCCGTCAGACGCACAAGCTGTTAATAGACCCCTGTATTTACCA
CGCTCCCGAACTGATAGTGGCTCCCATTCATGCCAAGCGCGGCCTCAAGG
ACTATCCCACAGAGCAGGAGCTGAAGATTCTGCGCACTCGTGAGGGTTTG
GTGGACTCCGTTTACCGACATCCCATATTACCAGGCTACGCCGGATTTGT
CCCGAACAAAGTGAGTCAGATTGGCAAGCGATATGTTGCTGCCGCATCCG
CTGGAGTGGCTCGGCATGAGACGCTGATGGAGTTGTATCGGTGCGAGAAT
CGGACGCTCAGGCATCGGGATCTACTGGAGAGTGGGAACGGACTCTTCGA
CCGCAAGATCAACGAAAGACTGCTGCCACAAACCTACTACCGATCGCCCC
TGATCCTGGTGACCGGAGTGTCCAAGGGCATTAAGGACGAGACTTGTCCG
CCGAAAACGGAGAAACTCTGCTATAGCAAGTTCACATCGCCGCACTTCCT
GGAGGATGAAGATGCCGACAAGTTCATAATCAATGGTTACTCCGGCCACA
TTCCCATGTCAGTGACCCGATTCGGGGAGTCCAACAAGGTGCTGACCAAC
CGGGCACTGTGCAGCTTCTCGGACTATATGTACAAGCGGAAGCGGGATAC
GTGGTGTTGTGGACAGGATCTCAGCCGGCCGTCCATCACCTGCCCGCCCG
TGGGACACTTCGTCGTCTATCACGAGGACAGCGGAATGGTGCCCAACTAT
GCGGGTCATGTTCCTG
BO16267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-PA | 972 | CG18335-RA | 1..850 | 17..866 | 4200 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-RA | 1346 | CG18335-RA | 165..1014 | 17..866 | 4220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11290020..11290829 | 866..57 | 4020 | 99.8 | Minus |
| 2R | 25286936 | 2R | 11290892..11290932 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:47:47 has no hits.
BO16267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:40 Download gff for
BO16267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:44 Download gff for
BO16267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 163..1014 | 14..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:34 Download gff for
BO16267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 163..1014 | 14..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:34 Download gff for
BO16267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11290020..11290828 | 58..866 | 99 | <- | Minus |
| 2R | 11290892..11290934 | 14..57 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:44 Download gff for
BO16267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7177525..7178333 | 58..866 | 99 | <- | Minus |
| arm_2R | 7178397..7178439 | 14..57 | 97 | | Minus |
BO16267.complete Sequence
1003 bp assembled on 2006-10-11
GenBank Submission: FJ633761
> BO16267.complete
GAAGTTATCAGTCGACATGGACCACGCTATAACGCCGGAACCGCACTTGG
TGCCAGGTTACACGGGTCACTGCGCCCAGAATCGCGACCGAGTGGGTCGA
ACTTATGGCCGTCAGACGCACAAGCTGTTAATAGACCCCTGTATTTACCA
CGCTCCCGAACTGATAGTGGCTCCCATTCATGCCAAGCGCGGCCTCAAGG
ACTATCCCACAGAGCAGGAGCTGAAGATTCTGCGCACTCGTGAGGGTTTG
GTGGACTCCGTTTACCGACATCCCATATTACCAGGCTACGCCGGATTTGT
CCCGAACAAAGTGAGTCAGATTGGCAAGCGATATGTTGCTGCCGCATCCG
CTGGAGTGGCTCGGCATGAGACGCTGATGGAGTTGTATCGGTGCGAGAAT
CGGACGCTCAGGCATCGGGATCTACTGGAGAGTGGGAACGGACTCTTCGA
CCGCAAGATCAACGAAAGACTGCTGCCACAAACCTACTACCGATCGCCCC
TGATCCTGGTGACCGGAGTGTCCAAGGGCATTAAGGACGAGACTTGTCCG
CCGAAAACGGAGAAACTCTGCTATAGCAAGTTCACATCGCCGCACTTCCT
GGAGGATGAAGATGCCGACAAGTTCATAATCAATGGTTACTCCGGCCACA
TTCCCATGTCAGTGACCCGATTCGGGGAGTCCAACAAGGTGCTGACCAAC
CGGGCACTGTGCAGCTTCTCGGACTATATGTACAAGCGGAAGCGGGATAC
GTGGTGTTGTGGACAGGATCTCAGCCGGCCGTCCATCACCTGCCCGCCCG
TGGGACACTTCGTCGTCTATCACGAGGACAGCGGAATGGTGCCCAACTAT
GCGGGTCATGTTCCTGGGGAGACGTACAAGTTCGGACGCACCTACGCCAA
GACCACATACGATGCGAAGCGCTGGCTGGAGGTGCACAAGAATCTTACAG
TGCTGCCCGAGGTGGCCAATCTGGATTACGCCTACGCAAGCTTTCTAGAC
CAT
BO16267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-RA | 972 | CG18335-PA | 1..969 | 17..985 | 4815 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-RA | 1346 | CG18335-RA | 165..1133 | 17..985 | 4815 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11289901..11290829 | 985..57 | 4615 | 99.8 | Minus |
| 2R | 25286936 | 2R | 11290892..11290932 | 57..17 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:36:29 has no hits.
BO16267.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:12 Download gff for
BO16267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 1..972 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:31 Download gff for
BO16267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 103..1078 | 14..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:36 Download gff for
BO16267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 165..1133 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:12 Download gff for
BO16267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 103..1078 | 14..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:27 Download gff for
BO16267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18335-RA | 165..1133 | 17..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:27 Download gff for
BO16267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11289898..11290828 | 58..987 | 99 | <- | Minus |
| 2R | 11290892..11290932 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:36 Download gff for
BO16267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7177403..7178333 | 58..987 | 99 | <- | Minus |
| arm_2R | 7178397..7178437 | 17..57 | 100 | | Minus |
BO16267.pep Sequence
Translation from 16 to 1003
> BO16267.pep
MDHAITPEPHLVPGYTGHCAQNRDRVGRTYGRQTHKLLIDPCIYHAPELI
VAPIHAKRGLKDYPTEQELKILRTREGLVDSVYRHPILPGYAGFVPNKVS
QIGKRYVAAASAGVARHETLMELYRCENRTLRHRDLLESGNGLFDRKINE
RLLPQTYYRSPLILVTGVSKGIKDETCPPKTEKLCYSKFTSPHFLEDEDA
DKFIINGYSGHIPMSVTRFGESNKVLTNRALCSFSDYMYKRKRDTWCCGQ
DLSRPSITCPPVGHFVVYHEDSGMVPNYAGHVPGETYKFGRTYAKTTYDA
KRWLEVHKNLTVLPEVANLDYAYASFLDH
BO16267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18335-PA | 323 | CG18335-PA | 1..323 | 1..323 | 1756 | 100 | Plus |
