Clone Sequence Records
BO16268.3prime Sequence
659 bp (659 high quality bases) assembled on 2006-10-13
> BO16268.3prime
ATGGTCTAGAAAGCTTGCGGCTTTGGCTGGCTCCTGGGCCTCGTGATCGG
AGGAGATATCTTGTTCCGGCTCCTCCACCACCGCCTCCTCCTCGCACTCC
TCCGGTGCCTCGACGTAGTTCTCACCCATGATGATCTCCTCGGCCAGTTG
ATACAGCTCGCGAATATCCTTGGCATTTCTGAGCGCCACGATCTTCTCAT
CCTCGAAGCGCAGCTGATCGTACTGCTGCTTGGAGATGAGCAGACCTCGA
TTGAACTCGTCCTCCATTTCGGCCTCCAGTTCCTCCGCGTACTGCTGCTT
GGCCAGCGTCAGGCTGATGGCATCCTCGCTGATCACCGTCTCCTCGGAGA
CATCGGTGGCATCGTCCAGATATTTGGAGTTCACTGCGCCGCCCTGGAAG
TCATCGTCCTCCATCGAAGGTTCTTGTGGCATGATGATCTCCCCGCTGGA
ACGATGGGCATCCTCGATAAGTTCGGTTAGTTGTTGAGTGGTGACCGCAA
GTTTGACATCTTTTAGCTTGTCCTCCAGCTGATTGCGAATACGCAGCTCG
GTCTCCCGGAACTTTTGCCTGGCCCTGACTATATTCTGTATATCCTGGGG
ATCCGAGGAGTAGGGCTGGGATATGCGCAACGAACGCTCCTTCATGTCGA
CTGATAACT
BO16268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7196-PA | 1326 | CG7196-RA | 697..1323 | 645..19 | 3035 | 99.3 | Minus |
CG7196-PB | 630 | CG7196-RB | 1..627 | 645..19 | 3035 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RD | 2435 | CG46025-RD | 1257..1883 | 645..19 | 3075 | 99.4 | Minus |
CG46025-RB | 1083 | CG46025-RB | 104..730 | 645..19 | 3075 | 99.4 | Minus |
CG46025-RA | 1837 | CG46025-RA | 858..1484 | 645..19 | 3075 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7764753..7765155 | 570..168 | 1955 | 99 | Minus |
2L | 23513712 | 2L | 7765212..7765363 | 170..19 | 760 | 100 | Minus |
2L | 23513712 | 2L | 7764611..7764688 | 645..568 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:16:56 has no hits.
BO16268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:40 Download gff for
BO16268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-PB | 1..630 | 15..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:11 Download gff for
BO16268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 858..1487 | 15..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:21 Download gff for
BO16268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RA | 858..1487 | 15..645 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:21 Download gff for
BO16268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7764611..7764687 | 569..645 | 100 | -> | Minus |
2L | 7764755..7765154 | 169..568 | 99 | -> | Minus |
2L | 7765214..7765366 | 15..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:11 Download gff for
BO16268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7764611..7764687 | 569..645 | 100 | -> | Minus |
arm_2L | 7764755..7765154 | 169..568 | 99 | -> | Minus |
arm_2L | 7765214..7765366 | 15..168 | 98 | | Minus |
BO16268.5prime Sequence
659 bp (659 high quality bases) assembled on 2006-10-13
> BO16268.5prime
GAAGTTATCAGTCGACATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCT
ACTCCTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAG
TTCCGGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAA
AGATGTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGG
ATGCCCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATG
GAGGACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGA
TGCCACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCC
TGACGCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAG
GACGAGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCT
GCGCTTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTC
GCGAGCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTACGTC
GAGGCACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACA
AGATATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCGCAAGCT
TTCTAGACC
BO16268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7196-PA | 1326 | CG7196-RA | 697..1323 | 17..643 | 3035 | 99.3 | Plus |
CG7196-PB | 630 | CG7196-RB | 1..627 | 17..643 | 3035 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RD | 2435 | CG46025-RD | 1257..1883 | 17..643 | 3075 | 99.4 | Plus |
CG46025-RB | 1083 | CG46025-RB | 104..730 | 17..643 | 3075 | 99.4 | Plus |
CG46025-RA | 1837 | CG46025-RA | 858..1484 | 17..643 | 3075 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7764753..7765155 | 92..494 | 1955 | 99 | Plus |
2L | 23513712 | 2L | 7765212..7765363 | 492..643 | 760 | 100 | Plus |
2L | 23513712 | 2L | 7764611..7764688 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:33:24 has no hits.
BO16268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:40 Download gff for
BO16268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-PB | 1..630 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:54 Download gff for
BO16268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 858..1487 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:18 Download gff for
BO16268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RA | 858..1487 | 17..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:18 Download gff for
BO16268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7764611..7764687 | 17..93 | 100 | -> | Plus |
2L | 7764755..7765154 | 94..493 | 99 | -> | Plus |
2L | 7765214..7765366 | 494..647 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:54 Download gff for
BO16268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7764611..7764687 | 17..93 | 100 | -> | Plus |
arm_2L | 7764755..7765154 | 94..493 | 99 | -> | Plus |
arm_2L | 7765214..7765366 | 494..647 | 98 | | Plus |
BO16268.complete Sequence
661 bp assembled on 2006-10-11
GenBank Submission: FJ633762
> BO16268.complete
GAAGTTATCAGTCGACATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCT
ACTCCTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAG
TTCCGGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAA
AGATGTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGG
ATGCCCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATG
GAGGACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGA
TGCCACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCC
TGACGCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAG
GACGAGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCT
GCGCTTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTC
GCGAGCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTACGTC
GAGGCACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACA
AGATATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCGCAAGCT
TTCTAGACCAT
BO16268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RD | 1791 | CG46025-PD | 1162..1788 | 17..643 | 3075 | 99.4 | Plus |
CG46025-RB | 630 | CG46025-PB | 1..627 | 17..643 | 3075 | 99.4 | Plus |
CG46025-RA | 1326 | CG46025-PA | 697..1323 | 17..643 | 3075 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RD | 2435 | CG46025-RD | 1257..1883 | 17..643 | 3075 | 99.4 | Plus |
CG46025-RB | 1083 | CG46025-RB | 104..730 | 17..643 | 3075 | 99.4 | Plus |
CG46025-RA | 1837 | CG46025-RA | 858..1484 | 17..643 | 3075 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7764753..7765155 | 92..494 | 1955 | 99 | Plus |
2L | 23513712 | 2L | 7765212..7765363 | 492..643 | 760 | 100 | Plus |
2L | 23513712 | 2L | 7764611..7764688 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:53:51 has no hits.
BO16268.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:14 Download gff for
BO16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RB | 1..630 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:32 Download gff for
BO16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RB | 104..733 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:21 Download gff for
BO16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 858..1484 | 17..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:14 Download gff for
BO16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RB | 104..733 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:40 Download gff for
BO16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RA | 858..1484 | 17..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:40 Download gff for
BO16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7764611..7764687 | 17..93 | 100 | -> | Plus |
2L | 7764755..7765154 | 94..493 | 99 | -> | Plus |
2L | 7765214..7765363 | 494..645 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:21 Download gff for
BO16268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7765214..7765363 | 494..645 | 98 | | Plus |
arm_2L | 7764611..7764687 | 17..93 | 100 | -> | Plus |
arm_2L | 7764755..7765154 | 94..493 | 99 | -> | Plus |
BO16268.pep Sequence
Translation from 16 to 661
> BO16268.pep
MKERSLRISQPYSSDPQDIQNIVRARQKFRETELRIRNQLEDKLKDVKLA
VTTQQLTELIEDAHRSSGEIIMPQEPSMEDDDFQGGAVNSKYLDDATDVS
EETVISEDAISLTLAKQQYAEELEAEMEDEFNRGLLISKQQYDQLRFEDE
KIVALRNAKDIRELYQLAEEIIMGENYVEAPEECEEEAVVEEPEQDISSD
HEAQEPAKAASFLDH
BO16268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-PB | 209 | CG46025-PB | 1..209 | 1..209 | 1041 | 100 | Plus |
CG46025-PA | 441 | CG46025-PA | 233..441 | 1..209 | 1041 | 100 | Plus |
CG46025-PC | 441 | CG46025-PC | 233..441 | 1..209 | 1041 | 100 | Plus |
CG46025-PD | 596 | CG46025-PD | 388..596 | 1..209 | 1041 | 100 | Plus |