Clone BO16268 Report

Search the DGRC for BO16268

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG7196-RB
Protein status:BO16268.pep: full length peptide match
Sequenced Size:661

Clone Sequence Records

BO16268.3prime Sequence

659 bp (659 high quality bases) assembled on 2006-10-13

> BO16268.3prime
ATGGTCTAGAAAGCTTGCGGCTTTGGCTGGCTCCTGGGCCTCGTGATCGG
AGGAGATATCTTGTTCCGGCTCCTCCACCACCGCCTCCTCCTCGCACTCC
TCCGGTGCCTCGACGTAGTTCTCACCCATGATGATCTCCTCGGCCAGTTG
ATACAGCTCGCGAATATCCTTGGCATTTCTGAGCGCCACGATCTTCTCAT
CCTCGAAGCGCAGCTGATCGTACTGCTGCTTGGAGATGAGCAGACCTCGA
TTGAACTCGTCCTCCATTTCGGCCTCCAGTTCCTCCGCGTACTGCTGCTT
GGCCAGCGTCAGGCTGATGGCATCCTCGCTGATCACCGTCTCCTCGGAGA
CATCGGTGGCATCGTCCAGATATTTGGAGTTCACTGCGCCGCCCTGGAAG
TCATCGTCCTCCATCGAAGGTTCTTGTGGCATGATGATCTCCCCGCTGGA
ACGATGGGCATCCTCGATAAGTTCGGTTAGTTGTTGAGTGGTGACCGCAA
GTTTGACATCTTTTAGCTTGTCCTCCAGCTGATTGCGAATACGCAGCTCG
GTCTCCCGGAACTTTTGCCTGGCCCTGACTATATTCTGTATATCCTGGGG
ATCCGAGGAGTAGGGCTGGGATATGCGCAACGAACGCTCCTTCATGTCGA
CTGATAACT

BO16268.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7196-PA 1326 CG7196-RA 697..1323 645..19 3035 99.3 Minus
CG7196-PB 630 CG7196-RB 1..627 645..19 3035 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RD 2435 CG46025-RD 1257..1883 645..19 3075 99.4 Minus
CG46025-RB 1083 CG46025-RB 104..730 645..19 3075 99.4 Minus
CG46025-RA 1837 CG46025-RA 858..1484 645..19 3075 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7764753..7765155 570..168 1955 99 Minus
2L 23513712 2L 7765212..7765363 170..19 760 100 Minus
2L 23513712 2L 7764611..7764688 645..568 390 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:16:56 has no hits.

BO16268.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:40 Download gff for BO16268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-PB 1..630 15..645 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:11 Download gff for BO16268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 858..1487 15..645 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:21 Download gff for BO16268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG46025-RA 858..1487 15..645 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:21 Download gff for BO16268.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7764611..7764687 569..645 100 -> Minus
2L 7764755..7765154 169..568 99 -> Minus
2L 7765214..7765366 15..168 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:11 Download gff for BO16268.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7764611..7764687 569..645 100 -> Minus
arm_2L 7764755..7765154 169..568 99 -> Minus
arm_2L 7765214..7765366 15..168 98   Minus

BO16268.5prime Sequence

659 bp (659 high quality bases) assembled on 2006-10-13

> BO16268.5prime
GAAGTTATCAGTCGACATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCT
ACTCCTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAG
TTCCGGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAA
AGATGTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGG
ATGCCCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATG
GAGGACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGA
TGCCACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCC
TGACGCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAG
GACGAGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCT
GCGCTTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTC
GCGAGCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTACGTC
GAGGCACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACA
AGATATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCGCAAGCT
TTCTAGACC

BO16268.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7196-PA 1326 CG7196-RA 697..1323 17..643 3035 99.3 Plus
CG7196-PB 630 CG7196-RB 1..627 17..643 3035 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RD 2435 CG46025-RD 1257..1883 17..643 3075 99.4 Plus
CG46025-RB 1083 CG46025-RB 104..730 17..643 3075 99.4 Plus
CG46025-RA 1837 CG46025-RA 858..1484 17..643 3075 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7764753..7765155 92..494 1955 99 Plus
2L 23513712 2L 7765212..7765363 492..643 760 100 Plus
2L 23513712 2L 7764611..7764688 17..94 390 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:33:24 has no hits.

BO16268.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:40 Download gff for BO16268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-PB 1..630 17..647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:54 Download gff for BO16268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 858..1487 17..647 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:18 Download gff for BO16268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG46025-RA 858..1487 17..647 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:18 Download gff for BO16268.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7764611..7764687 17..93 100 -> Plus
2L 7764755..7765154 94..493 99 -> Plus
2L 7765214..7765366 494..647 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:54 Download gff for BO16268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7764611..7764687 17..93 100 -> Plus
arm_2L 7764755..7765154 94..493 99 -> Plus
arm_2L 7765214..7765366 494..647 98   Plus

BO16268.complete Sequence

661 bp assembled on 2006-10-11

GenBank Submission: FJ633762

> BO16268.complete
GAAGTTATCAGTCGACATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCT
ACTCCTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAG
TTCCGGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAA
AGATGTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGG
ATGCCCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATG
GAGGACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGA
TGCCACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCC
TGACGCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAG
GACGAGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCT
GCGCTTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTC
GCGAGCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTACGTC
GAGGCACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACA
AGATATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCGCAAGCT
TTCTAGACCAT

BO16268.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RD 1791 CG46025-PD 1162..1788 17..643 3075 99.4 Plus
CG46025-RB 630 CG46025-PB 1..627 17..643 3075 99.4 Plus
CG46025-RA 1326 CG46025-PA 697..1323 17..643 3075 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-RD 2435 CG46025-RD 1257..1883 17..643 3075 99.4 Plus
CG46025-RB 1083 CG46025-RB 104..730 17..643 3075 99.4 Plus
CG46025-RA 1837 CG46025-RA 858..1484 17..643 3075 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7764753..7765155 92..494 1955 99 Plus
2L 23513712 2L 7765212..7765363 492..643 760 100 Plus
2L 23513712 2L 7764611..7764688 17..94 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:53:51 has no hits.

BO16268.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:14 Download gff for BO16268.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RB 1..630 17..647 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:32 Download gff for BO16268.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RB 104..733 17..647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:21 Download gff for BO16268.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 858..1484 17..645 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:14 Download gff for BO16268.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RB 104..733 17..647 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:40 Download gff for BO16268.complete
Subject Subject Range Query Range Percent Splice Strand
CG46025-RA 858..1484 17..645 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:40 Download gff for BO16268.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7764611..7764687 17..93 100 -> Plus
2L 7764755..7765154 94..493 99 -> Plus
2L 7765214..7765363 494..645 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:21 Download gff for BO16268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7765214..7765363 494..645 98   Plus
arm_2L 7764611..7764687 17..93 100 -> Plus
arm_2L 7764755..7765154 94..493 99 -> Plus

BO16268.pep Sequence

Translation from 16 to 661

> BO16268.pep
MKERSLRISQPYSSDPQDIQNIVRARQKFRETELRIRNQLEDKLKDVKLA
VTTQQLTELIEDAHRSSGEIIMPQEPSMEDDDFQGGAVNSKYLDDATDVS
EETVISEDAISLTLAKQQYAEELEAEMEDEFNRGLLISKQQYDQLRFEDE
KIVALRNAKDIRELYQLAEEIIMGENYVEAPEECEEEAVVEEPEQDISSD
HEAQEPAKAASFLDH

BO16268.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-PB 209 CG46025-PB 1..209 1..209 1041 100 Plus
CG46025-PA 441 CG46025-PA 233..441 1..209 1041 100 Plus
CG46025-PC 441 CG46025-PC 233..441 1..209 1041 100 Plus
CG46025-PD 596 CG46025-PD 388..596 1..209 1041 100 Plus