Clone BO16282 Report

Search the DGRC for BO16282

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG30487-RA
Protein status:BO16282.pep: Imported from assembly
Sequenced Size:629

Clone Sequence Records

BO16282.3prime Sequence

627 bp (627 high quality bases) assembled on 2006-10-13

> BO16282.3prime
ATGGTCTAGAAAGCTTGCAGTATACATTATTTCAGCGCTGAGCGGAAGAT
TCTTGGGTATGTTGAGCATATTTTCGAAGTAGCTGGACAGCTCTTCGAAA
TTAACTTCGTCGGGGCTTTGAGTCGGAGCTTCTGTGCCTCCATTAGAGAA
AATATCATCACATTGACAGGTCAGGTAGACTGTATCGGGATCCGTTGGGA
TCGATTTAGCCAGATCCTGTAGTTTGTCCACCCTTGGGACCGTCAAGTTT
ATGGCGTTTCCGTAACCACAAATATTTTCACACTCGCTCATCATGGTTTT
AAGATCGTAGGCATTGCCAGAAACCTTTCCAGTCGCAATCTTTGCCCAAT
TAGATTCCTTCTCTTCGTCGGTGTCTCGAATTTTGTGAGCCCAATCCACT
CCTTCGGCACGAATTCTTTTAAAGGGATGTTCAATTATTGACTTTCGAAG
AAGAAACTTTTGCTTCAGTGTATGCTTCGGAATTCGTAGATCTTCGAATT
TGTTGGAATCCAAAGTTGCCTCTATTGCAGATTTATCGAAAGTTGTTGCT
TCGATTGGATTGTCAGATATTATCATCTTACGCAGCTCGGAGGAGATTTT
TTCTATAGACATGTCCGACTGATAACT

BO16282.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30487-PA 597 CG30487-RA 1..594 612..19 2970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG30487-RA 728 CG30487-RA 73..667 613..19 2975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12937677..12938271 19..613 2975 100 Plus
Blast to na_te.dros performed on 2015-02-03 05:23:06 has no hits.

BO16282.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:58 Download gff for BO16282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30487-PA 1..597 15..612 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:17:02 Download gff for BO16282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30487-RA 73..675 11..613 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:28:48 Download gff for BO16282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30487-RA 73..675 11..613 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:28:48 Download gff for BO16282.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12937669..12938271 11..613 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:17:02 Download gff for BO16282.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8825174..8825776 11..613 99   Plus

BO16282.5prime Sequence

627 bp (627 high quality bases) assembled on 2006-10-13

> BO16282.5prime
GAAGTTATCAGTCGGACATGTCTATAGAAAAAATCTCCTCCGAGCTGCGT
AAGATGATAATATCTGACAATCCAATCGAAGCAACAACTTTCGATAAATC
TGCAATAGAGGCAACTTTGGATTCCAACAAATTCGAAGATCTACGAATTC
CGAAGCATACACTGAAGCAAAAGTTTCTTCTTCGAAAGTCAATAATTGAA
CATCCCTTTAAAAGAATTCGTGCCGAAGGAGTGGATTGGGCTCACAAAAT
TCGAGACACCGACGAAGAGAAGGAATCTAATTGGGCAAAGATTGCGACTG
GAAAGGTTTCTGGCAATGCCTACGATCTTAAAACCATGATGAGCGAGTGT
GAAAATATTTGTGGTTACGGAAACGCCATAAACTTGACGGTCCCAAGGGT
GGACAAACTACAGGATCTGGCTAAATCGATCCCAACGGATCCCGATACAG
TCTACCTGACCTGTCAATGTGATGATATTTTCTCTAATGGAGGCACAGAA
GCTCCGACTCAAAGCCCCGACGAAGTTAATTTCGAAGAGCTGTCCAGCTA
CTTCGAAAATATGCTCAACATACCCAAGAATCTTCCGCTCAGCGCTGAAA
TAATGTATACTGCAAGCTTTCTAGACC

BO16282.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30487-PA 597 CG30487-RA 1..594 18..611 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG30487-RA 728 CG30487-RA 73..667 17..611 2975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12937677..12938271 611..17 2975 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:09:05 has no hits.

BO16282.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:58 Download gff for BO16282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30487-PA 1..597 18..615 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:19:34 Download gff for BO16282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30487-RA 73..675 17..619 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:40 Download gff for BO16282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30487-RA 73..675 17..619 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:40 Download gff for BO16282.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12937669..12938271 17..619 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:19:34 Download gff for BO16282.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8825174..8825776 17..619 99   Minus

BO16282.complete Sequence

629 bp assembled on 2008-08-15

GenBank Submission: FJ633767

> BO16282.complete
GAAGTTATCAGTCGGACATGTCTATAGAAAAAATCTCCTCCGAGCTGCGT
AAGATGATAATATCTGACAATCCAATCGAAGCAACAACTTTCGATAAATC
TGCAATAGAGGCAACTTTGGATTCCAACAAATTCGAAGATCTACGAATTC
CGAAGCATACACTGAAGCAAAAGTTTCTTCTTCGAAAGTCAATAATTGAA
CATCCCTTTAAAAGAATTCGTGCCGAAGGAGTGGATTGGGCTCACAAAAT
TCGAGACACCGACGAAGAGAAGGAATCTAATTGGGCAAAGATTGCGACTG
GAAAGGTTTCTGGCAATGCCTACGATCTTAAAACCATGATGAGCGAGTGT
GAAAATATTTGTGGTTACGGAAACGCCATAAACTTGACGGTCCCAAGGGT
GGACAAACTACAGGATCTGGCTAAATCGATCCCAACGGATCCCGATACAG
TCTACCTGACCTGTCAATGTGATGATATTTTCTCTAATGGAGGCACAGAA
GCTCCGACTCAAAGCCCCGACGAAGTTAATTTCGAAGAGCTGTCCAGCTA
CTTCGAAAATATGCTCAACATACCCAAGAATCTTCCGCTCAGCGCTGAAA
TAATGTATACTGCAAGCTTTCTAGACCAT

BO16282.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30487-RA 597 CG30487-PA 1..594 18..611 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG30487-RA 728 CG30487-RA 73..667 17..611 2975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12937677..12938271 611..17 2975 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:42:27 has no hits.

BO16282.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:45 Download gff for BO16282.complete
Subject Subject Range Query Range Percent Splice Strand
CG30487-RA 73..675 17..619 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:54 Download gff for BO16282.complete
Subject Subject Range Query Range Percent Splice Strand
CG30487-RA 73..667 17..613 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:13 Download gff for BO16282.complete
Subject Subject Range Query Range Percent Splice Strand
CG30487-RA 73..667 17..613 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:35 Download gff for BO16282.complete
Subject Subject Range Query Range Percent Splice Strand
CG30487-RA 73..667 17..613 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:35 Download gff for BO16282.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12937675..12938271 17..613 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:54 Download gff for BO16282.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8825180..8825776 17..613 99   Minus

BO16282.pep Sequence

Translation from 17 to 629

> BO16282.pep
MSIEKISSELRKMIISDNPIEATTFDKSAIEATLDSNKFEDLRIPKHTLK
QKFLLRKSIIEHPFKRIRAEGVDWAHKIRDTDEEKESNWAKIATGKVSGN
AYDLKTMMSECENICGYGNAINLTVPRVDKLQDLAKSIPTDPDTVYLTCQ
CDDIFSNGGTEAPTQSPDEVNFEELSSYFENMLNIPKNLPLSAEIMYTAS
FLDH

BO16282.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30487-PA 198 CG30487-PA 1..198 1..198 1031 100 Plus