Clone Sequence Records
BO16282.3prime Sequence
627 bp (627 high quality bases) assembled on 2006-10-13
> BO16282.3prime
ATGGTCTAGAAAGCTTGCAGTATACATTATTTCAGCGCTGAGCGGAAGAT
TCTTGGGTATGTTGAGCATATTTTCGAAGTAGCTGGACAGCTCTTCGAAA
TTAACTTCGTCGGGGCTTTGAGTCGGAGCTTCTGTGCCTCCATTAGAGAA
AATATCATCACATTGACAGGTCAGGTAGACTGTATCGGGATCCGTTGGGA
TCGATTTAGCCAGATCCTGTAGTTTGTCCACCCTTGGGACCGTCAAGTTT
ATGGCGTTTCCGTAACCACAAATATTTTCACACTCGCTCATCATGGTTTT
AAGATCGTAGGCATTGCCAGAAACCTTTCCAGTCGCAATCTTTGCCCAAT
TAGATTCCTTCTCTTCGTCGGTGTCTCGAATTTTGTGAGCCCAATCCACT
CCTTCGGCACGAATTCTTTTAAAGGGATGTTCAATTATTGACTTTCGAAG
AAGAAACTTTTGCTTCAGTGTATGCTTCGGAATTCGTAGATCTTCGAATT
TGTTGGAATCCAAAGTTGCCTCTATTGCAGATTTATCGAAAGTTGTTGCT
TCGATTGGATTGTCAGATATTATCATCTTACGCAGCTCGGAGGAGATTTT
TTCTATAGACATGTCCGACTGATAACT
BO16282.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30487-PA | 597 | CG30487-RA | 1..594 | 612..19 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30487-RA | 728 | CG30487-RA | 73..667 | 613..19 | 2975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12937677..12938271 | 19..613 | 2975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 05:23:06 has no hits.
BO16282.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:58 Download gff for
BO16282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30487-PA | 1..597 | 15..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:17:02 Download gff for
BO16282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30487-RA | 73..675 | 11..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:28:48 Download gff for
BO16282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30487-RA | 73..675 | 11..613 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:28:48 Download gff for
BO16282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12937669..12938271 | 11..613 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:17:02 Download gff for
BO16282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8825174..8825776 | 11..613 | 99 | | Plus |
BO16282.5prime Sequence
627 bp (627 high quality bases) assembled on 2006-10-13
> BO16282.5prime
GAAGTTATCAGTCGGACATGTCTATAGAAAAAATCTCCTCCGAGCTGCGT
AAGATGATAATATCTGACAATCCAATCGAAGCAACAACTTTCGATAAATC
TGCAATAGAGGCAACTTTGGATTCCAACAAATTCGAAGATCTACGAATTC
CGAAGCATACACTGAAGCAAAAGTTTCTTCTTCGAAAGTCAATAATTGAA
CATCCCTTTAAAAGAATTCGTGCCGAAGGAGTGGATTGGGCTCACAAAAT
TCGAGACACCGACGAAGAGAAGGAATCTAATTGGGCAAAGATTGCGACTG
GAAAGGTTTCTGGCAATGCCTACGATCTTAAAACCATGATGAGCGAGTGT
GAAAATATTTGTGGTTACGGAAACGCCATAAACTTGACGGTCCCAAGGGT
GGACAAACTACAGGATCTGGCTAAATCGATCCCAACGGATCCCGATACAG
TCTACCTGACCTGTCAATGTGATGATATTTTCTCTAATGGAGGCACAGAA
GCTCCGACTCAAAGCCCCGACGAAGTTAATTTCGAAGAGCTGTCCAGCTA
CTTCGAAAATATGCTCAACATACCCAAGAATCTTCCGCTCAGCGCTGAAA
TAATGTATACTGCAAGCTTTCTAGACC
BO16282.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30487-PA | 597 | CG30487-RA | 1..594 | 18..611 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30487-RA | 728 | CG30487-RA | 73..667 | 17..611 | 2975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12937677..12938271 | 611..17 | 2975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:09:05 has no hits.
BO16282.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:47:58 Download gff for
BO16282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30487-PA | 1..597 | 18..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:19:34 Download gff for
BO16282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30487-RA | 73..675 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:40 Download gff for
BO16282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30487-RA | 73..675 | 17..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:40 Download gff for
BO16282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12937669..12938271 | 17..619 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:19:34 Download gff for
BO16282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8825174..8825776 | 17..619 | 99 | | Minus |
BO16282.complete Sequence
629 bp assembled on 2008-08-15
GenBank Submission: FJ633767
> BO16282.complete
GAAGTTATCAGTCGGACATGTCTATAGAAAAAATCTCCTCCGAGCTGCGT
AAGATGATAATATCTGACAATCCAATCGAAGCAACAACTTTCGATAAATC
TGCAATAGAGGCAACTTTGGATTCCAACAAATTCGAAGATCTACGAATTC
CGAAGCATACACTGAAGCAAAAGTTTCTTCTTCGAAAGTCAATAATTGAA
CATCCCTTTAAAAGAATTCGTGCCGAAGGAGTGGATTGGGCTCACAAAAT
TCGAGACACCGACGAAGAGAAGGAATCTAATTGGGCAAAGATTGCGACTG
GAAAGGTTTCTGGCAATGCCTACGATCTTAAAACCATGATGAGCGAGTGT
GAAAATATTTGTGGTTACGGAAACGCCATAAACTTGACGGTCCCAAGGGT
GGACAAACTACAGGATCTGGCTAAATCGATCCCAACGGATCCCGATACAG
TCTACCTGACCTGTCAATGTGATGATATTTTCTCTAATGGAGGCACAGAA
GCTCCGACTCAAAGCCCCGACGAAGTTAATTTCGAAGAGCTGTCCAGCTA
CTTCGAAAATATGCTCAACATACCCAAGAATCTTCCGCTCAGCGCTGAAA
TAATGTATACTGCAAGCTTTCTAGACCAT
BO16282.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30487-RA | 597 | CG30487-PA | 1..594 | 18..611 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30487-RA | 728 | CG30487-RA | 73..667 | 17..611 | 2975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12937677..12938271 | 611..17 | 2975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:42:27 has no hits.
BO16282.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:45 Download gff for
BO16282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30487-RA | 73..675 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:54 Download gff for
BO16282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30487-RA | 73..667 | 17..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:13 Download gff for
BO16282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30487-RA | 73..667 | 17..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:35 Download gff for
BO16282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30487-RA | 73..667 | 17..613 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:35 Download gff for
BO16282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12937675..12938271 | 17..613 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:54 Download gff for
BO16282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8825180..8825776 | 17..613 | 99 | | Minus |
BO16282.pep Sequence
Translation from 17 to 629
> BO16282.pep
MSIEKISSELRKMIISDNPIEATTFDKSAIEATLDSNKFEDLRIPKHTLK
QKFLLRKSIIEHPFKRIRAEGVDWAHKIRDTDEEKESNWAKIATGKVSGN
AYDLKTMMSECENICGYGNAINLTVPRVDKLQDLAKSIPTDPDTVYLTCQ
CDDIFSNGGTEAPTQSPDEVNFEELSSYFENMLNIPKNLPLSAEIMYTAS
FLDH
BO16282.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30487-PA | 198 | CG30487-PA | 1..198 | 1..198 | 1031 | 100 | Plus |