Clone BO16284 Report

Search the DGRC for BO16284

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG31407-RA
Protein status:BO16284.pep: validated full length
Sequenced Size:502

Clone Sequence Records

BO16284.3prime Sequence

500 bp (500 high quality bases) assembled on 2006-10-13

> BO16284.3prime
ATGGTCTAGAAAGCTTGCTAGTACTCGAGGAAAGGGCAGCATGAGACGGG
CGTCCAAGGACACATCGCCGGAGGGCATGTGTTCGCGTTGCTCCCCCGAG
CTCACTCGGGGATACCTGATCCCCGTCATCATGGGCGGAGACCCGTCCAG
TTGCTGTAGCTTGAGCATCAGGGTCGACATCTTGGGCAGAGAACCCTCGC
AACTATATCCCGCCAGTATATCGGCTGCATACTGGTCTATATCCCGTCCC
AGTTGCTCCACCACCGGCTGCACCACCGAATAATGGCCATTGAGGCTGCT
AAAGAATCCATGTCGTGATCCTGCCTCCAGGACGTCGGTGACCACGGGAC
GGATGCGGTGCAGCGGCAGCCTGTAGACGTCGGCCACTCTTTCCGCCACC
TCGTAACTGGTCGCCGGGCGACCCAGCACCTTCAACACTTCCAACACCAG
AGCCCCATTCTGTCTGCCCAGATTAGTGGGAATCATGTCGACTGATAACT

BO16284.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-PA 471 CG31407-RA 1..468 486..19 2315 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-RB 778 CG31407-RB 196..663 486..19 2325 99.8 Minus
CG31407-RA 764 CG31407-RA 182..649 486..19 2325 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10022960..10023427 19..486 2325 99.8 Plus
Blast to na_te.dros performed on 2015-02-02 18:33:13 has no hits.

BO16284.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:00 Download gff for BO16284.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31407-PA 1..471 16..486 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:55 Download gff for BO16284.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 180..657 11..489 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:14 Download gff for BO16284.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 180..657 11..489 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:14 Download gff for BO16284.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10022952..10023429 11..489 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:55 Download gff for BO16284.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5848674..5849151 11..489 98   Plus

BO16284.5prime Sequence

500 bp (500 high quality bases) assembled on 2006-10-13

> BO16284.5prime
GAAGTTATCAGTCGACATGATTCCCACTAATCTGGGCAGACAGAATGGGG
CTCTGGTGTTGGAAGTGTTGAAGGTGCTGGGTCGCCCGGCGACCAGTTAC
GAGGTGGCGGAAAGAGTGGCCGACGTCTACAGGCTGCCGCTGCACCGCAT
CCGTCCCGTGGTCACCGACGTCCTGGAGGCAGGATCACGACATGGATTCT
TTAGCAGCCTCAATGGCCATTATTCGGTGGTGCAGCCGGTGGTGGAGCAA
CTGGGACGGGATATAGACCAGTATGCAGCCGATATACTGGCGGGATATAG
TTGCGAGGGTTCTCTGCCCAAGATGTCGACCCTGATGCTCAAGCTACAGC
AACTGGACGGGTCTCCGCCCATGATGACGGGGATCAGGTATCCCCGAGTG
AGCTCGGGGGAGCAACGCGAACACATGCCCTCCGGCGATGTGTCCTTGGA
CGCCCGTCTCATGCTGCCCTTTCCTCGAGTACTAGCAAGCTTTCTAGACC

BO16284.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-PA 471 CG31407-RA 1..468 17..484 2315 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-RB 778 CG31407-RB 196..663 17..484 2325 99.8 Plus
CG31407-RA 764 CG31407-RA 182..649 17..484 2325 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10022960..10023427 484..17 2325 99.8 Minus
Blast to na_te.dros performed on 2015-02-02 18:33:53 has no hits.

BO16284.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:01 Download gff for BO16284.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31407-PA 1..471 17..487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:58 Download gff for BO16284.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 180..657 14..492 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:19 Download gff for BO16284.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 180..657 14..492 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:19 Download gff for BO16284.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10022952..10023429 14..492 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:58 Download gff for BO16284.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5848674..5849151 14..492 98   Minus

BO16284.complete Sequence

502 bp assembled on 2006-10-11

GenBank Submission: FJ633768

> BO16284.complete
GAAGTTATCAGTCGACATGATTCCCACTAATCTGGGCAGACAGAATGGGG
CTCTGGTGTTGGAAGTGTTGAAGGTGCTGGGTCGCCCGGCGACCAGTTAC
GAGGTGGCGGAAAGAGTGGCCGACGTCTACAGGCTGCCGCTGCACCGCAT
CCGTCCCGTGGTCACCGACGTCCTGGAGGCAGGATCACGACATGGATTCT
TTAGCAGCCTCAATGGCCATTATTCGGTGGTGCAGCCGGTGGTGGAGCAA
CTGGGACGGGATATAGACCAGTATGCAGCCGATATACTGGCGGGATATAG
TTGCGAGGGTTCTCTGCCCAAGATGTCGACCCTGATGCTCAAGCTACAGC
AACTGGACGGGTCTCCGCCCATGATGACGGGGATCAGGTATCCCCGAGTG
AGCTCGGGGGAGCAACGCGAACACATGCCCTCCGGCGATGTGTCCTTGGA
CGCCCGTCTCATGCTGCCCTTTCCTCGAGTACTAGCAAGCTTTCTAGACC
AT

BO16284.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-RB 471 CG31407-PB 1..468 17..484 2325 99.8 Plus
CG31407-RA 471 CG31407-PA 1..468 17..484 2325 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-RB 778 CG31407-RB 196..663 17..484 2325 99.8 Plus
CG31407-RA 764 CG31407-RA 182..649 17..484 2325 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10022960..10023427 484..17 2325 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 02:03:34 has no hits.

BO16284.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:18 Download gff for BO16284.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 1..471 17..487 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:38 Download gff for BO16284.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 180..657 14..492 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:26 Download gff for BO16284.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 182..649 17..486 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:18 Download gff for BO16284.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 180..657 14..492 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:43 Download gff for BO16284.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 182..649 17..486 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:43 Download gff for BO16284.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10022957..10023427 17..486 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:26 Download gff for BO16284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5848679..5849149 17..486 99   Minus

BO16284.pep Sequence

Translation from 16 to 502

> BO16284.pep
MIPTNLGRQNGALVLEVLKVLGRPATSYEVAERVADVYRLPLHRIRPVVT
DVLEAGSRHGFFSSLNGHYSVVQPVVEQLGRDIDQYAADILAGYSCEGSL
PKMSTLMLKLQQLDGSPPMMTGIRYPRVSSGEQREHMPSGDVSLDARLML
PFPRVLASFLDH

BO16284.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-PB 156 CG31407-PB 1..156 1..156 796 100 Plus
CG31407-PA 156 CG31407-PA 1..156 1..156 796 100 Plus