Clone Sequence Records
BO16284.3prime Sequence
500 bp (500 high quality bases) assembled on 2006-10-13
> BO16284.3prime
ATGGTCTAGAAAGCTTGCTAGTACTCGAGGAAAGGGCAGCATGAGACGGG
CGTCCAAGGACACATCGCCGGAGGGCATGTGTTCGCGTTGCTCCCCCGAG
CTCACTCGGGGATACCTGATCCCCGTCATCATGGGCGGAGACCCGTCCAG
TTGCTGTAGCTTGAGCATCAGGGTCGACATCTTGGGCAGAGAACCCTCGC
AACTATATCCCGCCAGTATATCGGCTGCATACTGGTCTATATCCCGTCCC
AGTTGCTCCACCACCGGCTGCACCACCGAATAATGGCCATTGAGGCTGCT
AAAGAATCCATGTCGTGATCCTGCCTCCAGGACGTCGGTGACCACGGGAC
GGATGCGGTGCAGCGGCAGCCTGTAGACGTCGGCCACTCTTTCCGCCACC
TCGTAACTGGTCGCCGGGCGACCCAGCACCTTCAACACTTCCAACACCAG
AGCCCCATTCTGTCTGCCCAGATTAGTGGGAATCATGTCGACTGATAACT
BO16284.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31407-PA | 471 | CG31407-RA | 1..468 | 486..19 | 2315 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31407-RB | 778 | CG31407-RB | 196..663 | 486..19 | 2325 | 99.8 | Minus |
CG31407-RA | 764 | CG31407-RA | 182..649 | 486..19 | 2325 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10022960..10023427 | 19..486 | 2325 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:33:13 has no hits.
BO16284.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:00 Download gff for
BO16284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-PA | 1..471 | 16..486 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:55 Download gff for
BO16284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-RA | 180..657 | 11..489 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:14 Download gff for
BO16284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-RA | 180..657 | 11..489 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:14 Download gff for
BO16284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10022952..10023429 | 11..489 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:55 Download gff for
BO16284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5848674..5849151 | 11..489 | 98 | | Plus |
BO16284.5prime Sequence
500 bp (500 high quality bases) assembled on 2006-10-13
> BO16284.5prime
GAAGTTATCAGTCGACATGATTCCCACTAATCTGGGCAGACAGAATGGGG
CTCTGGTGTTGGAAGTGTTGAAGGTGCTGGGTCGCCCGGCGACCAGTTAC
GAGGTGGCGGAAAGAGTGGCCGACGTCTACAGGCTGCCGCTGCACCGCAT
CCGTCCCGTGGTCACCGACGTCCTGGAGGCAGGATCACGACATGGATTCT
TTAGCAGCCTCAATGGCCATTATTCGGTGGTGCAGCCGGTGGTGGAGCAA
CTGGGACGGGATATAGACCAGTATGCAGCCGATATACTGGCGGGATATAG
TTGCGAGGGTTCTCTGCCCAAGATGTCGACCCTGATGCTCAAGCTACAGC
AACTGGACGGGTCTCCGCCCATGATGACGGGGATCAGGTATCCCCGAGTG
AGCTCGGGGGAGCAACGCGAACACATGCCCTCCGGCGATGTGTCCTTGGA
CGCCCGTCTCATGCTGCCCTTTCCTCGAGTACTAGCAAGCTTTCTAGACC
BO16284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31407-PA | 471 | CG31407-RA | 1..468 | 17..484 | 2315 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31407-RB | 778 | CG31407-RB | 196..663 | 17..484 | 2325 | 99.8 | Plus |
CG31407-RA | 764 | CG31407-RA | 182..649 | 17..484 | 2325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10022960..10023427 | 484..17 | 2325 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:33:53 has no hits.
BO16284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:01 Download gff for
BO16284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-PA | 1..471 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:58 Download gff for
BO16284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-RA | 180..657 | 14..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:19 Download gff for
BO16284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-RA | 180..657 | 14..492 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:19 Download gff for
BO16284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10022952..10023429 | 14..492 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:58 Download gff for
BO16284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5848674..5849151 | 14..492 | 98 | | Minus |
BO16284.complete Sequence
502 bp assembled on 2006-10-11
GenBank Submission: FJ633768
> BO16284.complete
GAAGTTATCAGTCGACATGATTCCCACTAATCTGGGCAGACAGAATGGGG
CTCTGGTGTTGGAAGTGTTGAAGGTGCTGGGTCGCCCGGCGACCAGTTAC
GAGGTGGCGGAAAGAGTGGCCGACGTCTACAGGCTGCCGCTGCACCGCAT
CCGTCCCGTGGTCACCGACGTCCTGGAGGCAGGATCACGACATGGATTCT
TTAGCAGCCTCAATGGCCATTATTCGGTGGTGCAGCCGGTGGTGGAGCAA
CTGGGACGGGATATAGACCAGTATGCAGCCGATATACTGGCGGGATATAG
TTGCGAGGGTTCTCTGCCCAAGATGTCGACCCTGATGCTCAAGCTACAGC
AACTGGACGGGTCTCCGCCCATGATGACGGGGATCAGGTATCCCCGAGTG
AGCTCGGGGGAGCAACGCGAACACATGCCCTCCGGCGATGTGTCCTTGGA
CGCCCGTCTCATGCTGCCCTTTCCTCGAGTACTAGCAAGCTTTCTAGACC
AT
BO16284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31407-RB | 471 | CG31407-PB | 1..468 | 17..484 | 2325 | 99.8 | Plus |
CG31407-RA | 471 | CG31407-PA | 1..468 | 17..484 | 2325 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31407-RB | 778 | CG31407-RB | 196..663 | 17..484 | 2325 | 99.8 | Plus |
CG31407-RA | 764 | CG31407-RA | 182..649 | 17..484 | 2325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10022960..10023427 | 484..17 | 2325 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:03:34 has no hits.
BO16284.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:18 Download gff for
BO16284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-RA | 1..471 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:38 Download gff for
BO16284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-RA | 180..657 | 14..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:26 Download gff for
BO16284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-RA | 182..649 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:18 Download gff for
BO16284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-RA | 180..657 | 14..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:43 Download gff for
BO16284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31407-RA | 182..649 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:43 Download gff for
BO16284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10022957..10023427 | 17..486 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:26 Download gff for
BO16284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5848679..5849149 | 17..486 | 99 | | Minus |
BO16284.pep Sequence
Translation from 16 to 502
> BO16284.pep
MIPTNLGRQNGALVLEVLKVLGRPATSYEVAERVADVYRLPLHRIRPVVT
DVLEAGSRHGFFSSLNGHYSVVQPVVEQLGRDIDQYAADILAGYSCEGSL
PKMSTLMLKLQQLDGSPPMMTGIRYPRVSSGEQREHMPSGDVSLDARLML
PFPRVLASFLDH
BO16284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31407-PB | 156 | CG31407-PB | 1..156 | 1..156 | 796 | 100 | Plus |
CG31407-PA | 156 | CG31407-PA | 1..156 | 1..156 | 796 | 100 | Plus |