Clone Sequence Records
BO16288.3prime Sequence
677 bp (644 high quality bases) assembled on 2006-10-13
> BO16288.3prime
ATGGTCTAGAAAGCTTGCGCCCTCCGCCGTATGAACGTGAGGCACTGGCT
CCTGACCCTGCTGCTGATGCAGTTGTTGCGGAGGATTGTTCTGAATACTG
GGGTGCTGATGGACTGTCGGCTCCTGCTCCTTATCTTCCATTTCCATCTG
CTCCTGTGGCTCGAGCGGCGTCTGCGGCTGCTGGGTTTCCTCGGAGGACT
CGGCATTAGGGGGATCCGGATCACCATCACTGCTGACCAGCGAGTAGTTC
GGGGGCTTCTTAAGCAGGTAGCGTGTGTTCGGGTTCTGTCTCGTTTCGAG
CTCCAGGCGATCGATCAGCCAGCCCTGTTTCTGGTTGTTTGAGGCCCAGA
AATAGACGGTCCCCCTGTCCTTGGGACCCTGGACATGGAACTGCAGCTGG
GCCTTGTCCTCGTCACAGCGATTCTTCTCGTTGGACAGATTAAAGCCCGA
CTCCTTGATGGGCTCGCCCAGCAGACCGACCGCTCCACTGTGCTGGCGTA
GCTGCTGGATGGCCAACTGATAGAACTCCGTCTGGCGTACACGGTCCTCA
AGTCGCCAGCGCATGTAGGCCAGGCCCGAGATGGAGGCGAGTGCTCCGCA
GATGCATATGCTGCCCATCGTTCGCTTCGAGGGCAGACCGATACGCAACT
TTAAGGTTGGCATGTCGACTGATAACT
BO16288.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31913-PA | 648 | CG31913-RA | 1..645 | 663..19 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31913-RA | 863 | CG31913-RA | 89..734 | 664..19 | 3230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5784119..5784764 | 664..19 | 3230 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 18:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2462 | 183..58 | 154 | 60.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2507 | 183..58 | 133 | 59.2 | Minus |
BO16288.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:06 Download gff for
BO16288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-PA | 1..648 | 16..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:00 Download gff for
BO16288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-RA | 86..734 | 19..667 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:21 Download gff for
BO16288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-RA | 86..734 | 19..667 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:21 Download gff for
BO16288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5784116..5784768 | 14..667 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:00 Download gff for
BO16288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5784116..5784768 | 14..667 | 99 | -> | Minus |
BO16288.5prime Sequence
677 bp (677 high quality bases) assembled on 2006-10-13
> BO16288.5prime
GAAGTTATCAGTCGACATGCCAACCTTAAAGTTGCGTATCGGTCTGCCCT
CGAAGCGAACGATGGGCAGCATATGCATCTGCGGAGCACTCGCCTCCATC
TCGGGCCTGGCCTACATGCGCTGGCGACTTGAGGACCGTGTACGCCAGAC
GGAGTTCTATCAGTTGGCCATCCAGCAGCTACGCCAGCACAGTGGAGCGG
TCGGTCTGCTGGGCGAGCCCATCAAGGAGTCGGGCTTTAATCTGTCCAAC
GAGAAGAATCGCTGTGACGAGGACAAGGCCCAGCTGCAGTTCCATGTCCA
GGGTCCCAAGGACAGGGGGACCGTCTATTTCTGGGCCTCAAACAACCAGA
AACAGGGCTGGCTGATCGATCGCCTGGAGCTCGAAACGAGACAGAACCCG
AACACACGCTACCTGCTTAAGAAGCCCCCGAACTACTCGCTGGTCAGCAG
TGATGGTGATCCGGATCCCCCTAATGCCGAGTCCTCCGAGGAAACCCAGC
AGCCGCAGACGCCGCTCGAGCCACAGGAGCAGATGGAAATGGAAGATAAG
GAGCAGGAGCCGACAGTCCATCAGCACCCCAGTATTCAGAACAATCCTCC
GCAACAACTGCATCAGCAGCAGGGTCAGGAGCCAGTGCCTCACGTTCATA
CGGCGGAGGGCGCAAGCTTTCTAGACC
BO16288.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31913-PA | 648 | CG31913-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31913-RA | 863 | CG31913-RA | 89..734 | 16..661 | 3230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5784119..5784764 | 16..661 | 3230 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 18:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2462 | 497..622 | 154 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2507 | 497..622 | 133 | 59.2 | Plus |
BO16288.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:07 Download gff for
BO16288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-PA | 1..648 | 17..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:02 Download gff for
BO16288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-RA | 86..734 | 13..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:25 Download gff for
BO16288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-RA | 86..734 | 13..661 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:25 Download gff for
BO16288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5784116..5784768 | 13..666 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:02 Download gff for
BO16288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5784116..5784768 | 13..666 | 99 | -> | Plus |
BO16288.complete Sequence
679 bp assembled on 2006-10-11
GenBank Submission: FJ633769
> BO16288.complete
GAAGTTATCAGTCGACATGCCAACCTTAAAGTTGCGTATCGGTCTGCCCT
CGAAGCGAACGATGGGCAGCATATGCATCTGCGGAGCACTCGCCTCCATC
TCGGGCCTGGCCTACATGCGCTGGCGACTTGAGGACCGTGTACGCCAGAC
GGAGTTCTATCAGTTGGCCATCCAGCAGCTACGCCAGCACAGTGGAGCGG
TCGGTCTGCTGGGCGAGCCCATCAAGGAGTCGGGCTTTAATCTGTCCAAC
GAGAAGAATCGCTGTGACGAGGACAAGGCCCAGCTGCAGTTCCATGTCCA
GGGTCCCAAGGACAGGGGGACCGTCTATTTCTGGGCCTCAAACAACCAGA
AACAGGGCTGGCTGATCGATCGCCTGGAGCTCGAAACGAGACAGAACCCG
AACACACGCTACCTGCTTAAGAAGCCCCCGAACTACTCGCTGGTCAGCAG
TGATGGTGATCCGGATCCCCCTAATGCCGAGTCCTCCGAGGAAACCCAGC
AGCCGCAGACGCCGCTCGAGCCACAGGAGCAGATGGAAATGGAAGATAAG
GAGCAGGAGCCGACAGTCCATCAGCACCCCAGTATTCAGAACAATCCTCC
GCAACAACTGCATCAGCAGCAGGGTCAGGAGCCAGTGCCTCACGTTCATA
CGGCGGAGGGCGCAAGCTTTCTAGACCAT
BO16288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31913-RA | 648 | CG31913-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31913-RA | 863 | CG31913-RA | 89..734 | 16..661 | 3230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5784119..5784764 | 16..661 | 3230 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2462 | 497..622 | 154 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2507 | 497..622 | 133 | 59.2 | Plus |
BO16288.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:30:20 Download gff for
BO16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-RA | 1..648 | 17..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:36 Download gff for
BO16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-RA | 86..734 | 13..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:45 Download gff for
BO16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-RA | 90..734 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:30:20 Download gff for
BO16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-RA | 86..734 | 13..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:29 Download gff for
BO16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31913-RA | 90..734 | 17..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:29 Download gff for
BO16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5784120..5784764 | 17..663 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:45 Download gff for
BO16288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5784120..5784764 | 17..663 | 99 | | Plus |
BO16288.pep Sequence
Translation from 16 to 679
> BO16288.pep
MPTLKLRIGLPSKRTMGSICICGALASISGLAYMRWRLEDRVRQTEFYQL
AIQQLRQHSGAVGLLGEPIKESGFNLSNEKNRCDEDKAQLQFHVQGPKDR
GTVYFWASNNQKQGWLIDRLELETRQNPNTRYLLKKPPNYSLVSSDGDPD
PPNAESSEETQQPQTPLEPQEQMEMEDKEQEPTVHQHPSIQNNPPQQLHQ
QQGQEPVPHVHTAEGASFLDH
BO16288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31913-PA | 215 | CG31913-PA | 1..215 | 1..215 | 1153 | 100 | Plus |
| CG15653-PA | 170 | CG15653-PA | 7..167 | 11..165 | 441 | 51.6 | Plus |
