Clone BO16290 Report

Search the DGRC for BO16290

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:90
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO16290.pep: validated full length
Sequenced Size:739

Clone Sequence Records

BO16290.3prime Sequence

737 bp (737 high quality bases) assembled on 2006-10-13

> BO16290.3prime
ATGGTCTAGAAAGCTTGCGTGCGTCTCATTGTCGCTGTCTTCGTCCTTGT
TGGCCGCATCGCCGGCTTTCCTCGCCTTCTCCGTCAGTTCTGAGGGATTT
ATGAGATGTAGGCCACCGGTTACCCTGCCCACCAAACCCATTTCGAAGCG
GAAGTCCTTGTCCTTCAACTCGTCATGGACTTTGTAGATGATTTCACCAG
CGCTCTCCACCAATTCGTCGGTCCTCATATCCATCTTGAGCTTCTCCATC
TCAGTCTTGGCCAGCTGCTTGGCCTTGCCGCTGGCGCAGGCGAAGTAACC
GAAGGAGGCGAGAATGATGGAAAGTCCGAAGGGGCGGACGGCACTGTACA
GAGTGTAGGCGTGAACGTAGCCGGCGACTCGGTGGCACAGGTGTTTAAGC
GGGATAGCCTGCTCAAATTGCTGTCTGTAGTTGGCTGCCTCCTGACGCGC
AATGTCAGCCACAAAGTTTCCATCGGCCACCAAGCCGGCCACCGCCATTC
CGATGTTCTTTTCGATGGTGAAGATGCGTCCGCCGGCGTCTGGTTCGTAC
AGTTTACTGGTGATGATCTTCTCCACGGCCAGCACCACGGCGTCCTTGCC
CCGAATCCCGATTACGGTGCCGCTCTTCTCCACCGCCTTTGAGGCGTAGT
CGATCTGGAAAACGCGGCCATCAGGCGAAAACTGCGAGGCCGACAAGTCG
TATCCAGTGCCAATAGTACTCATGTCGACTGATAACT

BO16290.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1519-PB 708 Prosalpha7-RB 1..705 723..19 3525 100 Minus
CG1519-PA 762 Prosalpha7-RA 1..421 723..303 2105 100 Minus
CG1519-PA 762 Prosalpha7-RA 470..759 308..19 1450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 976 CG1519-RA 120..540 723..303 2105 100 Minus
Prosalpha7-RA 976 CG1519-RA 589..878 308..19 1450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9847239..9847638 303..702 2000 100 Plus
2R 25286936 2R 9846734..9846905 19..190 860 100 Plus
2R 25286936 2R 9847073..9847190 191..308 590 100 Plus
Blast to na_te.dros performed 2015-02-12 11:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1817..1864 268..219 136 80 Minus

BO16290.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:09 Download gff for BO16290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1519-PB 1..708 18..723 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:23 Download gff for BO16290.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..538 305..732 99 <- Minus
Prosalpha7-RA 593..883 11..304 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:51 Download gff for BO16290.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..538 305..732 99 <- Minus
Prosalpha7-RA 593..883 11..304 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:51 Download gff for BO16290.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9846729..9846905 11..190 97 <- Plus
2R 9847073..9847192 191..309 98 <- Plus
2R 9847246..9847638 310..702 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:23 Download gff for BO16290.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5734234..5734410 11..190 97 <- Plus
arm_2R 5734578..5734697 191..309 98 <- Plus
arm_2R 5734751..5735143 310..702 100 <- Plus

BO16290.5prime Sequence

737 bp (737 high quality bases) assembled on 2006-10-13

> BO16290.5prime
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTTCGGTTACTTCGC
CTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGC
TCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATC
ATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAAT
GGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAG
AACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAA
GACAGCGACAATGAGACGCACGCAAGCTTTCTAGACC

BO16290.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1519-PB 708 Prosalpha7-RB 1..705 17..721 3525 100 Plus
CG1519-PA 762 Prosalpha7-RA 1..421 17..437 2105 100 Plus
CG1519-PA 762 Prosalpha7-RA 470..759 432..721 1450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 976 CG1519-RA 120..540 17..437 2105 100 Plus
Prosalpha7-RA 976 CG1519-RA 589..878 432..721 1450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9847239..9847638 437..38 2000 100 Minus
2R 25286936 2R 9846734..9846905 721..550 860 100 Minus
2R 25286936 2R 9847073..9847190 549..432 590 100 Minus
Blast to na_te.dros performed 2015-02-10 16:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1817..1864 472..521 136 80 Plus

BO16290.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:10 Download gff for BO16290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1519-PB 1..708 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:18 Download gff for BO16290.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 112..538 8..435 99 <- Plus
Prosalpha7-RA 593..883 436..729 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:47 Download gff for BO16290.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 593..883 436..729 98   Plus
Prosalpha7-RA 112..538 8..435 99 <- Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:47 Download gff for BO16290.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9846729..9846905 550..729 97 <- Minus
2R 9847073..9847192 431..549 98 <- Minus
2R 9847246..9847638 38..430 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:18 Download gff for BO16290.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5734234..5734410 550..729 97 <- Minus
arm_2R 5734578..5734697 431..549 98 <- Minus
arm_2R 5734751..5735143 38..430 100 <- Minus

BO16290.complete Sequence

739 bp assembled on 2006-10-11

GenBank Submission: FJ633771

> BO16290.complete
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTTCGGTTACTTCGC
CTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGC
TCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATC
ATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAAT
GGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAG
AACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAA
GACAGCGACAATGAGACGCACGCAAGCTTTCTAGACCAT

BO16290.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 762 CG1519-PA 1..421 17..437 2105 100 Plus
Prosalpha7-RA 762 CG1519-PA 470..759 432..721 1450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-RA 976 CG1519-RA 120..540 17..437 2105 100 Plus
Prosalpha7-RA 976 CG1519-RA 589..878 432..721 1450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9847239..9847638 437..38 2000 100 Minus
2R 25286936 2R 9846734..9846905 721..550 860 100 Minus
2R 25286936 2R 9847073..9847190 549..432 590 100 Minus
Blast to na_te.dros performed 2014-11-27 14:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1817..1864 472..521 136 80 Plus

BO16290.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:05 Download gff for BO16290.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RB 1..708 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:02 Download gff for BO16290.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RB 110..827 8..729 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:29 Download gff for BO16290.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 120..538 17..435 100 <- Plus
Prosalpha7-RA 593..878 436..723 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:05 Download gff for BO16290.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RB 110..827 8..729 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:10 Download gff for BO16290.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha7-RA 120..538 17..435 100 <- Plus
Prosalpha7-RA 593..878 436..723 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:10 Download gff for BO16290.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9846732..9846905 550..723 98 <- Minus
2R 9847073..9847192 431..549 98 <- Minus
2R 9847246..9847638 38..430 100 <- Minus
2R 9847697..9847717 17..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:29 Download gff for BO16290.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5734237..5734410 550..723 98 <- Minus
arm_2R 5734578..5734697 431..549 98 <- Minus
arm_2R 5734751..5735143 38..430 100 <- Minus
arm_2R 5735202..5735222 17..37 100   Minus

BO16290.pep Sequence

Translation from 16 to 739

> BO16290.pep
MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAV
EKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYR
QQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASFGYFACASGK
AKQLAKTEMEKLKMDMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGR
VTGGLHLINPSELTEKARKAGDAANKDEDSDNETHASFLDH

BO16290.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha7-PA 253 CG1519-PA 1..253 1..235 1163 92.9 Plus
Prosalpha1-PB 244 CG18495-PB 8..242 7..222 255 28.4 Plus
Prosalpha1-PA 244 CG18495-PA 8..242 7..222 255 28.4 Plus
CG30382-PB 244 CG30382-PB 8..242 7..222 255 28.4 Plus
CG30382-PA 244 CG30382-PA 8..242 7..222 255 28.4 Plus