Clone Sequence Records
BO16290.3prime Sequence
737 bp (737 high quality bases) assembled on 2006-10-13
> BO16290.3prime
ATGGTCTAGAAAGCTTGCGTGCGTCTCATTGTCGCTGTCTTCGTCCTTGT
TGGCCGCATCGCCGGCTTTCCTCGCCTTCTCCGTCAGTTCTGAGGGATTT
ATGAGATGTAGGCCACCGGTTACCCTGCCCACCAAACCCATTTCGAAGCG
GAAGTCCTTGTCCTTCAACTCGTCATGGACTTTGTAGATGATTTCACCAG
CGCTCTCCACCAATTCGTCGGTCCTCATATCCATCTTGAGCTTCTCCATC
TCAGTCTTGGCCAGCTGCTTGGCCTTGCCGCTGGCGCAGGCGAAGTAACC
GAAGGAGGCGAGAATGATGGAAAGTCCGAAGGGGCGGACGGCACTGTACA
GAGTGTAGGCGTGAACGTAGCCGGCGACTCGGTGGCACAGGTGTTTAAGC
GGGATAGCCTGCTCAAATTGCTGTCTGTAGTTGGCTGCCTCCTGACGCGC
AATGTCAGCCACAAAGTTTCCATCGGCCACCAAGCCGGCCACCGCCATTC
CGATGTTCTTTTCGATGGTGAAGATGCGTCCGCCGGCGTCTGGTTCGTAC
AGTTTACTGGTGATGATCTTCTCCACGGCCAGCACCACGGCGTCCTTGCC
CCGAATCCCGATTACGGTGCCGCTCTTCTCCACCGCCTTTGAGGCGTAGT
CGATCTGGAAAACGCGGCCATCAGGCGAAAACTGCGAGGCCGACAAGTCG
TATCCAGTGCCAATAGTACTCATGTCGACTGATAACT
BO16290.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1519-PB | 708 | Prosalpha7-RB | 1..705 | 723..19 | 3525 | 100 | Minus |
CG1519-PA | 762 | Prosalpha7-RA | 1..421 | 723..303 | 2105 | 100 | Minus |
CG1519-PA | 762 | Prosalpha7-RA | 470..759 | 308..19 | 1450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..540 | 723..303 | 2105 | 100 | Minus |
Prosalpha7-RA | 976 | CG1519-RA | 589..878 | 308..19 | 1450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847239..9847638 | 303..702 | 2000 | 100 | Plus |
2R | 25286936 | 2R | 9846734..9846905 | 19..190 | 860 | 100 | Plus |
2R | 25286936 | 2R | 9847073..9847190 | 191..308 | 590 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 268..219 | 136 | 80 | Minus |
BO16290.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:09 Download gff for
BO16290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PB | 1..708 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:23 Download gff for
BO16290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..538 | 305..732 | 99 | <- | Minus |
Prosalpha7-RA | 593..883 | 11..304 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:51 Download gff for
BO16290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..538 | 305..732 | 99 | <- | Minus |
Prosalpha7-RA | 593..883 | 11..304 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:51 Download gff for
BO16290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9846729..9846905 | 11..190 | 97 | <- | Plus |
2R | 9847073..9847192 | 191..309 | 98 | <- | Plus |
2R | 9847246..9847638 | 310..702 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:23 Download gff for
BO16290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734234..5734410 | 11..190 | 97 | <- | Plus |
arm_2R | 5734578..5734697 | 191..309 | 98 | <- | Plus |
arm_2R | 5734751..5735143 | 310..702 | 100 | <- | Plus |
BO16290.5prime Sequence
737 bp (737 high quality bases) assembled on 2006-10-13
> BO16290.5prime
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTTCGGTTACTTCGC
CTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGC
TCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATC
ATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAAT
GGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAG
AACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAA
GACAGCGACAATGAGACGCACGCAAGCTTTCTAGACC
BO16290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1519-PB | 708 | Prosalpha7-RB | 1..705 | 17..721 | 3525 | 100 | Plus |
CG1519-PA | 762 | Prosalpha7-RA | 1..421 | 17..437 | 2105 | 100 | Plus |
CG1519-PA | 762 | Prosalpha7-RA | 470..759 | 432..721 | 1450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..540 | 17..437 | 2105 | 100 | Plus |
Prosalpha7-RA | 976 | CG1519-RA | 589..878 | 432..721 | 1450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847239..9847638 | 437..38 | 2000 | 100 | Minus |
2R | 25286936 | 2R | 9846734..9846905 | 721..550 | 860 | 100 | Minus |
2R | 25286936 | 2R | 9847073..9847190 | 549..432 | 590 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 472..521 | 136 | 80 | Plus |
BO16290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:10 Download gff for
BO16290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1519-PB | 1..708 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:18 Download gff for
BO16290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 112..538 | 8..435 | 99 | <- | Plus |
Prosalpha7-RA | 593..883 | 436..729 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:47 Download gff for
BO16290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 593..883 | 436..729 | 98 | | Plus |
Prosalpha7-RA | 112..538 | 8..435 | 99 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:47 Download gff for
BO16290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9846729..9846905 | 550..729 | 97 | <- | Minus |
2R | 9847073..9847192 | 431..549 | 98 | <- | Minus |
2R | 9847246..9847638 | 38..430 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:18 Download gff for
BO16290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734234..5734410 | 550..729 | 97 | <- | Minus |
arm_2R | 5734578..5734697 | 431..549 | 98 | <- | Minus |
arm_2R | 5734751..5735143 | 38..430 | 100 | <- | Minus |
BO16290.complete Sequence
739 bp assembled on 2006-10-11
GenBank Submission: FJ633771
> BO16290.complete
GAAGTTATCAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGG
CCTCGCAGTTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCA
AAGGCGGTGGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGC
CGTGGTGCTGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAG
ACGCCGGCGGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTG
GCCGGCTTGGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGA
GGCAGCCAACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACC
TGTGCCACCGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCC
GTCCGCCCCTTCGGACTTTCCATCATTCTCGCCTCCTTCGGTTACTTCGC
CTGCGCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGC
TCAAGATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATC
ATCTACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAAT
GGGTTTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAG
AACTGACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAA
GACAGCGACAATGAGACGCACGCAAGCTTTCTAGACCAT
BO16290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 762 | CG1519-PA | 1..421 | 17..437 | 2105 | 100 | Plus |
Prosalpha7-RA | 762 | CG1519-PA | 470..759 | 432..721 | 1450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-RA | 976 | CG1519-RA | 120..540 | 17..437 | 2105 | 100 | Plus |
Prosalpha7-RA | 976 | CG1519-RA | 589..878 | 432..721 | 1450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9847239..9847638 | 437..38 | 2000 | 100 | Minus |
2R | 25286936 | 2R | 9846734..9846905 | 721..550 | 860 | 100 | Minus |
2R | 25286936 | 2R | 9847073..9847190 | 549..432 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 472..521 | 136 | 80 | Plus |
BO16290.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:05 Download gff for
BO16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RB | 1..708 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:02 Download gff for
BO16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RB | 110..827 | 8..729 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:29 Download gff for
BO16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 120..538 | 17..435 | 100 | <- | Plus |
Prosalpha7-RA | 593..878 | 436..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:05 Download gff for
BO16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RB | 110..827 | 8..729 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:10 Download gff for
BO16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha7-RA | 120..538 | 17..435 | 100 | <- | Plus |
Prosalpha7-RA | 593..878 | 436..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:10 Download gff for
BO16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9846732..9846905 | 550..723 | 98 | <- | Minus |
2R | 9847073..9847192 | 431..549 | 98 | <- | Minus |
2R | 9847246..9847638 | 38..430 | 100 | <- | Minus |
2R | 9847697..9847717 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:29 Download gff for
BO16290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5734237..5734410 | 550..723 | 98 | <- | Minus |
arm_2R | 5734578..5734697 | 431..549 | 98 | <- | Minus |
arm_2R | 5734751..5735143 | 38..430 | 100 | <- | Minus |
arm_2R | 5735202..5735222 | 17..37 | 100 | | Minus |
BO16290.pep Sequence
Translation from 16 to 739
> BO16290.pep
MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAV
EKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYR
QQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASFGYFACASGK
AKQLAKTEMEKLKMDMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGR
VTGGLHLINPSELTEKARKAGDAANKDEDSDNETHASFLDH
BO16290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha7-PA | 253 | CG1519-PA | 1..253 | 1..235 | 1163 | 92.9 | Plus |
Prosalpha1-PB | 244 | CG18495-PB | 8..242 | 7..222 | 255 | 28.4 | Plus |
Prosalpha1-PA | 244 | CG18495-PA | 8..242 | 7..222 | 255 | 28.4 | Plus |
CG30382-PB | 244 | CG30382-PB | 8..242 | 7..222 | 255 | 28.4 | Plus |
CG30382-PA | 244 | CG30382-PA | 8..242 | 7..222 | 255 | 28.4 | Plus |