Clone Sequence Records
BO16291.3prime Sequence
224 bp (224 high quality bases) assembled on 2006-10-13
> BO16291.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGCCTTGCCTTCGTCCTTCTTTTTGC
CGCCCGACTTGTCGTCCTTGTTGCGCACAAAGAGCACGCCCAGTCCCACG
CCGATGACGAAGAACAGGACGCGGTTGCACGGCGTACAGTTGAGCCTGGC
AAGGAGCGACGGCATCGGCCGGCACACCCTGCGGACCTCGGTACGCTTAC
AACAGGGCATGTCGACTGATAACT
BO16291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12902-PA | 195 | CG12902-RA | 1..192 | 210..19 | 910 | 98.9 | Minus |
CG12902-PB | 195 | CG12902-RB | 1..192 | 210..19 | 910 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43397-RB | 896 | CG43397-RB | 387..579 | 211..19 | 935 | 99 | Minus |
CG43397-RA | 1047 | CG43397-RA | 538..730 | 211..19 | 935 | 99 | Minus |
CG12902-RC | 664 | CG12902-RC | 155..347 | 211..19 | 935 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10355041..10355233 | 19..211 | 935 | 99 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:18:05 has no hits.
BO16291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:11 Download gff for
BO16291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-PB | 1..195 | 18..210 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:27 Download gff for
BO16291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43397-RB | 378..579 | 19..222 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:34 Download gff for
BO16291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RC | 146..347 | 19..222 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:34 Download gff for
BO16291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10355041..10355240 | 19..222 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:27 Download gff for
BO16291.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6242546..6242745 | 19..222 | 96 | | Plus |
BO16291.5prime Sequence
224 bp (224 high quality bases) assembled on 2006-10-13
> BO16291.5prime
GAAGTTATCAGTCGACATGCCCTGTTGTAAGCGTACCGAGGTCCGCAGGG
TGTGCCGGCCGATGCCGTCGCTCCTTGCCAGGCTCAACTGTACGCCGTGC
AACCGCGTCCTGTTCTTCGTCATCGGCGTGGGACTGGGCGTGCTCTTTGT
GCGCAACAAGGACGACAAGTCGGGCGGCAAAAAGAAGGACGAAGGCAAGG
CCAAGAAGGCAAGCTTTCTAGACC
BO16291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12902-PA | 195 | CG12902-RA | 1..192 | 17..208 | 910 | 98.9 | Plus |
CG12902-PB | 195 | CG12902-RB | 1..192 | 17..208 | 910 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43397-RB | 896 | CG43397-RB | 387..579 | 16..208 | 935 | 99 | Plus |
CG43397-RA | 1047 | CG43397-RA | 538..730 | 16..208 | 935 | 99 | Plus |
CG12902-RC | 664 | CG12902-RC | 155..347 | 16..208 | 935 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10355041..10355233 | 208..16 | 935 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:45:43 has no hits.
BO16291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:12 Download gff for
BO16291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-PB | 1..195 | 17..209 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:52 Download gff for
BO16291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43397-RB | 378..579 | 5..208 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:57 Download gff for
BO16291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RC | 146..347 | 5..208 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:57 Download gff for
BO16291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10355041..10355240 | 5..208 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:52 Download gff for
BO16291.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6242546..6242745 | 5..208 | 96 | | Minus |
BO16291.complete Sequence
226 bp assembled on 2006-10-11
GenBank Submission: FJ633772
> BO16291.complete
GAAGTTATCAGTCGACATGCCCTGTTGTAAGCGTACCGAGGTCCGCAGGG
TGTGCCGGCCGATGCCGTCGCTCCTTGCCAGGCTCAACTGTACGCCGTGC
AACCGCGTCCTGTTCTTCGTCATCGGCGTGGGACTGGGCGTGCTCTTTGT
GCGCAACAAGGACGACAAGTCGGGCGGCAAAAAGAAGGACGAAGGCAAGG
CCAAGAAGGCAAGCTTTCTAGACCAT
BO16291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12902-RC | 195 | CG12902-PC | 1..192 | 17..208 | 930 | 99 | Plus |
CG12902-RB | 195 | CG12902-PB | 1..192 | 17..208 | 930 | 99 | Plus |
CG12902-RA | 195 | CG12902-PA | 1..192 | 17..208 | 930 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43397-RB | 896 | CG43397-RB | 387..579 | 16..208 | 935 | 99 | Plus |
CG43397-RA | 1047 | CG43397-RA | 538..730 | 16..208 | 935 | 99 | Plus |
CG12902-RC | 664 | CG12902-RC | 155..347 | 16..208 | 935 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10355041..10355233 | 208..16 | 935 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:54:51 has no hits.
BO16291.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:53 Download gff for
BO16291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RB | 1..195 | 17..209 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:58 Download gff for
BO16291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RA | 529..730 | 5..208 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:49 Download gff for
BO16291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43397-RB | 388..579 | 17..210 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:53 Download gff for
BO16291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RA | 529..730 | 5..208 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:03 Download gff for
BO16291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RC | 156..347 | 17..210 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:03 Download gff for
BO16291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10355039..10355232 | 17..210 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:49 Download gff for
BO16291.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6242544..6242737 | 17..210 | 97 | | Minus |
BO16291.pep Sequence
Translation from 16 to 226
> BO16291.pep
MPCCKRTEVRRVCRPMPSLLARLNCTPCNRVLFFVIGVGLGVLFVRNKDD
KSGGKKKDEGKAKKASFLDH
BO16291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12902-PC | 64 | CG12902-PC | 1..64 | 1..64 | 345 | 100 | Plus |
CG12902-PB | 64 | CG12902-PB | 1..64 | 1..64 | 345 | 100 | Plus |
CG12902-PA | 64 | CG12902-PA | 1..64 | 1..64 | 345 | 100 | Plus |