Clone BO16292 Report

Search the DGRC for BO16292

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG14013-RA
Protein status:BO16292.pep: validated full length
Sequenced Size:757

Clone Sequence Records

BO16292.3prime Sequence

755 bp (755 high quality bases) assembled on 2006-10-13

> BO16292.3prime
ATGGTCTAGAAAGCTTGCTACCTTCTTGCGGACAAAGTGATCGTAGAACA
CAACATACCCGAACTTGGGAGAGTAGACCATCGATCGCTTGGCGTTCCTC
GAGTAAATGTTGAACTGGCCGCCCACCGAAATCATTTTGTGGTCACCGCG
ATGCATGAACATCAGTCCGAAGTGATGGTCGTGCATCACCTGGTAGTTAT
CGCTATCCGTGTACTTGACCACGTTATACCGGGGATTCGAGTAGCTGAGA
TGGTGTGGCATGGGCTTCAGGCGAGAGCGACCTTGGAAGACTCCCCGCCA
GTCCGTGTGCTTGATTGCCTCGCGGAAGCAGTTGCGCCAGCTCATGTCCA
GGTCTATGTAGCCGGAGATCTCCGAGCCGTCCATGTGGATGTACGAGGTA
AAAACGATGGTCGATAGTATCTTGTTCAAGTTGAGCAGCTCGCGGGCCTT
GAACTCCAGAAGAACTGGGTCCCTGTTCGTCGGCGACAGGAGGTCGCTGA
ACAGGCCCACGTGTGCCAGCTTCGGCCTAATGGCCTCCAGGGCCAGGTCA
ACCCTCTTCTCATACTCTTCGGCTGTGTAGGGTATCTTGGTGGTGCGGTA
ACCCAGCTGGACGATGGTCTTGATCGTGTTTTGATTGCCCAGATATCTGT
GGTCCGTGACGGTGGCAAACGAGGAGATGTAGTCATTGTAATTGTCAAAC
TCCAATACGCTAAAGTCCACGCTCTTTCCCTGGGTGGCCATGTCGACTGA
TAACT

BO16292.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-PA 726 CG14013-RA 1..723 741..19 3540 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-RA 955 CG14013-RA 136..858 741..19 3570 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5552940..5553333 19..412 1940 99.5 Plus
2L 23513712 2L 5553386..5553715 412..741 1635 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 17:52:11 has no hits.

BO16292.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:13 Download gff for BO16292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-PA 1..726 18..741 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:08 Download gff for BO16292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..858 19..741 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:00 Download gff for BO16292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..858 19..741 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:00 Download gff for BO16292.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5553386..5553715 412..741 99   Plus
2L 5552940..5553332 19..411 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:08 Download gff for BO16292.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5552940..5553332 19..411 99 <- Plus
arm_2L 5553386..5553715 412..741 99   Plus

BO16292.5prime Sequence

755 bp (755 high quality bases) assembled on 2006-10-13

> BO16292.5prime
GAAGTTATCAGTCGACATGGCCACCCAGGGAAAGAGCGTGGACTTTAGCG
TATTGGAGTTTGACAATTACAATGACTACATCTCCTCGTTTGCCACCGTC
ACGGACCACAGATATCTGGGCAATCAAAACACGATCAAGACCATCGTCCA
GCTGGGTTACCGCACCACCAAGATACCCTACACAGCCGAAGAGTATGAGA
AGAGGGTTGACCTGGCCCTGGAGGCCATTAGGCCGAAGCTGGCACACGTG
GGCCTGTTCAGCGACCTCCTGTCGCCGACGAACAGGGACCCAGTTCTTCT
GGAGTTCAAGGCCCGCGAGCTGCTCAACTTGAACAAGATACTATCGACCA
TCGTTTTTACCTCGTACATCCACATGGACGGCTCGGAGATCTCCGGCTAC
ATAGACCTGGACATGAGCTGGCGCAACTGCTTCCGCGAGGCAATCAAGCA
CACGGACTGGCGGGGAGTCTTCCAAGGTCGCTCTCGCCTGAAGCCCATGC
CACACCATCTCAGCTACTCGAATCCCCGGTATAACGTGGTCAAGTACACG
GATAGCGATAACTACCAGGTGATGCACGACCATCACTTCGGACTGATGTT
CATGCATCGCGGTGACCACAAAATGATTTCGGTGGGCGGCCAGTTCAACA
TTTACTCGAGGAACGCCAAGCGATCGATGGTCTACTCTCCCAAGTTCGGG
TATGTTGTGTTCTACGATCACTTTGTCCGCAAGAAGGTAGCAAGCTTTCT
AGACC

BO16292.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-PA 726 CG14013-RA 1..723 17..739 3540 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-RA 955 CG14013-RA 136..858 17..739 3570 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5552940..5553333 739..346 1940 99.5 Minus
2L 23513712 2L 5553386..5553715 346..17 1635 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 04:00:47 has no hits.

BO16292.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:13 Download gff for BO16292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-PA 1..726 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:38 Download gff for BO16292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..858 17..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:45 Download gff for BO16292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..858 17..739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:45 Download gff for BO16292.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5553386..5553715 17..346 99   Minus
2L 5552940..5553332 347..739 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:38 Download gff for BO16292.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5552940..5553332 347..739 99 <- Minus
arm_2L 5553386..5553715 17..346 99   Minus

BO16292.complete Sequence

757 bp assembled on 2006-10-11

GenBank Submission: FJ633773

> BO16292.complete
GAAGTTATCAGTCGACATGGCCACCCAGGGAAAGAGCGTGGACTTTAGCG
TATTGGAGTTTGACAATTACAATGACTACATCTCCTCGTTTGCCACCGTC
ACGGACCACAGATATCTGGGCAATCAAAACACGATCAAGACCATCGTCCA
GCTGGGTTACCGCACCACCAAGATACCCTACACAGCCGAAGAGTATGAGA
AGAGGGTTGACCTGGCCCTGGAGGCCATTAGGCCGAAGCTGGCACACGTG
GGCCTGTTCAGCGACCTCCTGTCGCCGACGAACAGGGACCCAGTTCTTCT
GGAGTTCAAGGCCCGCGAGCTGCTCAACTTGAACAAGATACTATCGACCA
TCGTTTTTACCTCGTACATCCACATGGACGGCTCGGAGATCTCCGGCTAC
ATAGACCTGGACATGAGCTGGCGCAACTGCTTCCGCGAGGCAATCAAGCA
CACGGACTGGCGGGGAGTCTTCCAAGGTCGCTCTCGCCTGAAGCCCATGC
CACACCATCTCAGCTACTCGAATCCCCGGTATAACGTGGTCAAGTACACG
GATAGCGATAACTACCAGGTGATGCACGACCATCACTTCGGACTGATGTT
CATGCATCGCGGTGACCACAAAATGATTTCGGTGGGCGGCCAGTTCAACA
TTTACTCGAGGAACGCCAAGCGATCGATGGTCTACTCTCCCAAGTTCGGG
TATGTTGTGTTCTACGATCACTTTGTCCGCAAGAAGGTAGCAAGCTTTCT
AGACCAT

BO16292.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-RA 726 CG14013-PA 1..723 17..739 3570 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-RA 955 CG14013-RA 136..858 17..739 3570 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5552940..5553333 739..346 1940 99.5 Minus
2L 23513712 2L 5553386..5553715 346..17 1635 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 10:07:46 has no hits.

BO16292.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:12 Download gff for BO16292.complete
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 1..726 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:04 Download gff for BO16292.complete
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 134..856 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:52 Download gff for BO16292.complete
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..858 17..741 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:13 Download gff for BO16292.complete
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 134..856 17..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:47 Download gff for BO16292.complete
Subject Subject Range Query Range Percent Splice Strand
CG14013-RA 136..858 17..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:47 Download gff for BO16292.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5552938..5553332 347..741 98 <- Minus
2L 5553386..5553715 17..346 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:52 Download gff for BO16292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5552938..5553332 347..741 98 <- Minus
arm_2L 5553386..5553715 17..346 99   Minus

BO16292.pep Sequence

Translation from 16 to 757

> BO16292.pep
MATQGKSVDFSVLEFDNYNDYISSFATVTDHRYLGNQNTIKTIVQLGYRT
TKIPYTAEEYEKRVDLALEAIRPKLAHVGLFSDLLSPTNRDPVLLEFKAR
ELLNLNKILSTIVFTSYIHMDGSEISGYIDLDMSWRNCFREAIKHTDWRG
VFQGRSRLKPMPHHLSYSNPRYNVVKYTDSDNYQVMHDHHFGLMFMHRGD
HKMISVGGQFNIYSRNAKRSMVYSPKFGYVVFYDHFVRKKVASFLDH

BO16292.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14013-PA 241 CG14013-PA 1..241 1..241 1283 100 Plus
CG8138-PA 233 CG8138-PA 3..232 9..240 392 36.6 Plus
CG3528-PA 235 CG3528-PA 2..233 11..239 384 35.5 Plus
CG14017-PA 238 CG14017-PA 26..238 18..241 317 37.1 Plus