Clone Sequence Records
BO16292.3prime Sequence
755 bp (755 high quality bases) assembled on 2006-10-13
> BO16292.3prime
ATGGTCTAGAAAGCTTGCTACCTTCTTGCGGACAAAGTGATCGTAGAACA
CAACATACCCGAACTTGGGAGAGTAGACCATCGATCGCTTGGCGTTCCTC
GAGTAAATGTTGAACTGGCCGCCCACCGAAATCATTTTGTGGTCACCGCG
ATGCATGAACATCAGTCCGAAGTGATGGTCGTGCATCACCTGGTAGTTAT
CGCTATCCGTGTACTTGACCACGTTATACCGGGGATTCGAGTAGCTGAGA
TGGTGTGGCATGGGCTTCAGGCGAGAGCGACCTTGGAAGACTCCCCGCCA
GTCCGTGTGCTTGATTGCCTCGCGGAAGCAGTTGCGCCAGCTCATGTCCA
GGTCTATGTAGCCGGAGATCTCCGAGCCGTCCATGTGGATGTACGAGGTA
AAAACGATGGTCGATAGTATCTTGTTCAAGTTGAGCAGCTCGCGGGCCTT
GAACTCCAGAAGAACTGGGTCCCTGTTCGTCGGCGACAGGAGGTCGCTGA
ACAGGCCCACGTGTGCCAGCTTCGGCCTAATGGCCTCCAGGGCCAGGTCA
ACCCTCTTCTCATACTCTTCGGCTGTGTAGGGTATCTTGGTGGTGCGGTA
ACCCAGCTGGACGATGGTCTTGATCGTGTTTTGATTGCCCAGATATCTGT
GGTCCGTGACGGTGGCAAACGAGGAGATGTAGTCATTGTAATTGTCAAAC
TCCAATACGCTAAAGTCCACGCTCTTTCCCTGGGTGGCCATGTCGACTGA
TAACT
BO16292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-PA | 726 | CG14013-RA | 1..723 | 741..19 | 3540 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-RA | 955 | CG14013-RA | 136..858 | 741..19 | 3570 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5552940..5553333 | 19..412 | 1940 | 99.5 | Plus |
2L | 23513712 | 2L | 5553386..5553715 | 412..741 | 1635 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:52:11 has no hits.
BO16292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:13 Download gff for
BO16292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-PA | 1..726 | 18..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:08 Download gff for
BO16292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..858 | 19..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:00 Download gff for
BO16292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..858 | 19..741 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:00 Download gff for
BO16292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5553386..5553715 | 412..741 | 99 | | Plus |
2L | 5552940..5553332 | 19..411 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:08 Download gff for
BO16292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5552940..5553332 | 19..411 | 99 | <- | Plus |
arm_2L | 5553386..5553715 | 412..741 | 99 | | Plus |
BO16292.5prime Sequence
755 bp (755 high quality bases) assembled on 2006-10-13
> BO16292.5prime
GAAGTTATCAGTCGACATGGCCACCCAGGGAAAGAGCGTGGACTTTAGCG
TATTGGAGTTTGACAATTACAATGACTACATCTCCTCGTTTGCCACCGTC
ACGGACCACAGATATCTGGGCAATCAAAACACGATCAAGACCATCGTCCA
GCTGGGTTACCGCACCACCAAGATACCCTACACAGCCGAAGAGTATGAGA
AGAGGGTTGACCTGGCCCTGGAGGCCATTAGGCCGAAGCTGGCACACGTG
GGCCTGTTCAGCGACCTCCTGTCGCCGACGAACAGGGACCCAGTTCTTCT
GGAGTTCAAGGCCCGCGAGCTGCTCAACTTGAACAAGATACTATCGACCA
TCGTTTTTACCTCGTACATCCACATGGACGGCTCGGAGATCTCCGGCTAC
ATAGACCTGGACATGAGCTGGCGCAACTGCTTCCGCGAGGCAATCAAGCA
CACGGACTGGCGGGGAGTCTTCCAAGGTCGCTCTCGCCTGAAGCCCATGC
CACACCATCTCAGCTACTCGAATCCCCGGTATAACGTGGTCAAGTACACG
GATAGCGATAACTACCAGGTGATGCACGACCATCACTTCGGACTGATGTT
CATGCATCGCGGTGACCACAAAATGATTTCGGTGGGCGGCCAGTTCAACA
TTTACTCGAGGAACGCCAAGCGATCGATGGTCTACTCTCCCAAGTTCGGG
TATGTTGTGTTCTACGATCACTTTGTCCGCAAGAAGGTAGCAAGCTTTCT
AGACC
BO16292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-PA | 726 | CG14013-RA | 1..723 | 17..739 | 3540 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-RA | 955 | CG14013-RA | 136..858 | 17..739 | 3570 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5552940..5553333 | 739..346 | 1940 | 99.5 | Minus |
2L | 23513712 | 2L | 5553386..5553715 | 346..17 | 1635 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:00:47 has no hits.
BO16292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:13 Download gff for
BO16292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-PA | 1..726 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:38 Download gff for
BO16292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..858 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:45 Download gff for
BO16292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..858 | 17..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:45 Download gff for
BO16292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5553386..5553715 | 17..346 | 99 | | Minus |
2L | 5552940..5553332 | 347..739 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:38 Download gff for
BO16292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5552940..5553332 | 347..739 | 99 | <- | Minus |
arm_2L | 5553386..5553715 | 17..346 | 99 | | Minus |
BO16292.complete Sequence
757 bp assembled on 2006-10-11
GenBank Submission: FJ633773
> BO16292.complete
GAAGTTATCAGTCGACATGGCCACCCAGGGAAAGAGCGTGGACTTTAGCG
TATTGGAGTTTGACAATTACAATGACTACATCTCCTCGTTTGCCACCGTC
ACGGACCACAGATATCTGGGCAATCAAAACACGATCAAGACCATCGTCCA
GCTGGGTTACCGCACCACCAAGATACCCTACACAGCCGAAGAGTATGAGA
AGAGGGTTGACCTGGCCCTGGAGGCCATTAGGCCGAAGCTGGCACACGTG
GGCCTGTTCAGCGACCTCCTGTCGCCGACGAACAGGGACCCAGTTCTTCT
GGAGTTCAAGGCCCGCGAGCTGCTCAACTTGAACAAGATACTATCGACCA
TCGTTTTTACCTCGTACATCCACATGGACGGCTCGGAGATCTCCGGCTAC
ATAGACCTGGACATGAGCTGGCGCAACTGCTTCCGCGAGGCAATCAAGCA
CACGGACTGGCGGGGAGTCTTCCAAGGTCGCTCTCGCCTGAAGCCCATGC
CACACCATCTCAGCTACTCGAATCCCCGGTATAACGTGGTCAAGTACACG
GATAGCGATAACTACCAGGTGATGCACGACCATCACTTCGGACTGATGTT
CATGCATCGCGGTGACCACAAAATGATTTCGGTGGGCGGCCAGTTCAACA
TTTACTCGAGGAACGCCAAGCGATCGATGGTCTACTCTCCCAAGTTCGGG
TATGTTGTGTTCTACGATCACTTTGTCCGCAAGAAGGTAGCAAGCTTTCT
AGACCAT
BO16292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-RA | 726 | CG14013-PA | 1..723 | 17..739 | 3570 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-RA | 955 | CG14013-RA | 136..858 | 17..739 | 3570 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5552940..5553333 | 739..346 | 1940 | 99.5 | Minus |
2L | 23513712 | 2L | 5553386..5553715 | 346..17 | 1635 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:07:46 has no hits.
BO16292.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:12 Download gff for
BO16292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 1..726 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:04 Download gff for
BO16292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 134..856 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:52 Download gff for
BO16292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..858 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:13 Download gff for
BO16292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 134..856 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:47 Download gff for
BO16292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14013-RA | 136..858 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:47 Download gff for
BO16292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5552938..5553332 | 347..741 | 98 | <- | Minus |
2L | 5553386..5553715 | 17..346 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:52 Download gff for
BO16292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5552938..5553332 | 347..741 | 98 | <- | Minus |
arm_2L | 5553386..5553715 | 17..346 | 99 | | Minus |
BO16292.pep Sequence
Translation from 16 to 757
> BO16292.pep
MATQGKSVDFSVLEFDNYNDYISSFATVTDHRYLGNQNTIKTIVQLGYRT
TKIPYTAEEYEKRVDLALEAIRPKLAHVGLFSDLLSPTNRDPVLLEFKAR
ELLNLNKILSTIVFTSYIHMDGSEISGYIDLDMSWRNCFREAIKHTDWRG
VFQGRSRLKPMPHHLSYSNPRYNVVKYTDSDNYQVMHDHHFGLMFMHRGD
HKMISVGGQFNIYSRNAKRSMVYSPKFGYVVFYDHFVRKKVASFLDH
BO16292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14013-PA | 241 | CG14013-PA | 1..241 | 1..241 | 1283 | 100 | Plus |
CG8138-PA | 233 | CG8138-PA | 3..232 | 9..240 | 392 | 36.6 | Plus |
CG3528-PA | 235 | CG3528-PA | 2..233 | 11..239 | 384 | 35.5 | Plus |
CG14017-PA | 238 | CG14017-PA | 26..238 | 18..241 | 317 | 37.1 | Plus |