Clone Sequence Records
BO16294.3prime Sequence
359 bp (359 high quality bases) assembled on 2006-10-13
> BO16294.3prime
ATGGTCTAGAAAGCTTGCCCAGGACTCTGTCTTGGATCTGAAGGCGCGGA
AGATGAGCGACAGGTGGATCCAGCGGTACCGCTGGCTCTGTCGTTCACCC
TGGAACGGAGCCACCAATTCCACGTTGCTGAATCCTGCAAAGTATTCTCT
CTGCCCGCGCTCCACGTAGGTGGTCATGAAGATATTCCCACTGAGAACAT
GGTACAATCTTCTAAAATAGTACAGCAATGTGGTATCAGAACCGCCCAGT
GCTCCTCCTCCTTCACTGTCCTCGTCGCTATCCGCCGCAGATTCCTCCAG
TTCAAACTGTATGCCGTTGAGACCCAGATTTAGTAACTCGTCCATGTCGA
CTGATAACT
BO16294.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12347-PA | 330 | CG12347-RA | 1..327 | 345..19 | 1635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12347-RB | 988 | CG12347-RB | 65..392 | 346..19 | 1640 | 100 | Minus |
CG12347-RA | 714 | CG12347-RA | 84..411 | 346..19 | 1640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17906528..17906855 | 346..19 | 1640 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:02:22 has no hits.
BO16294.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:16 Download gff for
BO16294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-PA | 1..330 | 16..345 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:15 Download gff for
BO16294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-RA | 84..416 | 14..346 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:45 Download gff for
BO16294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-RA | 84..416 | 14..346 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:45 Download gff for
BO16294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17906528..17906860 | 14..346 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:15 Download gff for
BO16294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13732250..13732582 | 14..346 | 99 | | Minus |
BO16294.5prime Sequence
359 bp (359 high quality bases) assembled on 2006-10-13
> BO16294.5prime
GAAGTTATCAGTCGACATGGACGAGTTACTAAATCTGGGTCTCAACGGCA
TACAGTTTGAACTGGAGGAATCTGCGGCGGATAGCGACGAGGACAGTGAA
GGAGGAGGAGCACTGGGCGGTTCTGATACCACATTGCTGTACTATTTTAG
AAGATTGTACCATGTTCTCAGTGGGAATATCTTCATGACCACCTACGTGG
AGCGCGGGCAGAGAGAATACTTTGCAGGATTCAGCAACGTGGAATTGGTG
GCTCCGTTCCAGGGTGAACGACAGAGCCAGCGGTACCGCTGGATCCACCT
GTCGCTCATCTTCCGCGCCTTCAGATCCAAGACAGAGTCCTGGGCAAGCT
TTCTAGACC
BO16294.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12347-PA | 330 | CG12347-RA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12347-RB | 988 | CG12347-RB | 65..392 | 16..343 | 1640 | 100 | Plus |
CG12347-RA | 714 | CG12347-RA | 84..411 | 16..343 | 1640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17906528..17906855 | 16..343 | 1640 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:18:21 has no hits.
BO16294.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:16 Download gff for
BO16294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-PA | 1..330 | 17..346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:30 Download gff for
BO16294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-RA | 84..416 | 16..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:36 Download gff for
BO16294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-RA | 84..416 | 16..348 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:36 Download gff for
BO16294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17906528..17906860 | 16..348 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:30 Download gff for
BO16294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13732250..13732582 | 16..348 | 99 | | Plus |
BO16294.complete Sequence
361 bp assembled on 2006-10-11
GenBank Submission: FJ633774
> BO16294.complete
GAAGTTATCAGTCGACATGGACGAGTTACTAAATCTGGGTCTCAACGGCA
TACAGTTTGAACTGGAGGAATCTGCGGCGGATAGCGACGAGGACAGTGAA
GGAGGAGGAGCACTGGGCGGTTCTGATACCACATTGCTGTACTATTTTAG
AAGATTGTACCATGTTCTCAGTGGGAATATCTTCATGACCACCTACGTGG
AGCGCGGGCAGAGAGAATACTTTGCAGGATTCAGCAACGTGGAATTGGTG
GCTCCGTTCCAGGGTGAACGACAGAGCCAGCGGTACCGCTGGATCCACCT
GTCGCTCATCTTCCGCGCCTTCAGATCCAAGACAGAGTCCTGGGCAAGCT
TTCTAGACCAT
BO16294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12347-RB | 330 | CG12347-PB | 1..327 | 17..343 | 1635 | 100 | Plus |
CG12347-RA | 330 | CG12347-PA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12347-RB | 988 | CG12347-RB | 65..392 | 16..343 | 1640 | 100 | Plus |
CG12347-RA | 714 | CG12347-RA | 84..411 | 16..343 | 1640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17906528..17906855 | 16..343 | 1640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:43:21 has no hits.
BO16294.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:14 Download gff for
BO16294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-RA | 1..330 | 17..346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:35 Download gff for
BO16294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-RA | 84..416 | 16..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:53 Download gff for
BO16294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-RA | 85..411 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:15 Download gff for
BO16294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-RA | 84..416 | 16..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:36 Download gff for
BO16294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12347-RA | 85..411 | 17..345 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:36 Download gff for
BO16294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17906529..17906855 | 17..345 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:53 Download gff for
BO16294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13732251..13732577 | 17..345 | 99 | | Plus |
BO16294.pep Sequence
Translation from 16 to 361
> BO16294.pep
MDELLNLGLNGIQFELEESAADSDEDSEGGGALGGSDTTLLYYFRRLYHV
LSGNIFMTTYVERGQREYFAGFSNVELVAPFQGERQSQRYRWIHLSLIFR
AFRSKTESWASFLDH
BO16294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12347-PB | 109 | CG12347-PB | 1..109 | 1..109 | 568 | 100 | Plus |
CG12347-PA | 109 | CG12347-PA | 1..109 | 1..109 | 568 | 100 | Plus |