Clone BO16294 Report

Search the DGRC for BO16294

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:162
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG12347-RA
Protein status:BO16294.pep: validated full length
Sequenced Size:361

Clone Sequence Records

BO16294.3prime Sequence

359 bp (359 high quality bases) assembled on 2006-10-13

> BO16294.3prime
ATGGTCTAGAAAGCTTGCCCAGGACTCTGTCTTGGATCTGAAGGCGCGGA
AGATGAGCGACAGGTGGATCCAGCGGTACCGCTGGCTCTGTCGTTCACCC
TGGAACGGAGCCACCAATTCCACGTTGCTGAATCCTGCAAAGTATTCTCT
CTGCCCGCGCTCCACGTAGGTGGTCATGAAGATATTCCCACTGAGAACAT
GGTACAATCTTCTAAAATAGTACAGCAATGTGGTATCAGAACCGCCCAGT
GCTCCTCCTCCTTCACTGTCCTCGTCGCTATCCGCCGCAGATTCCTCCAG
TTCAAACTGTATGCCGTTGAGACCCAGATTTAGTAACTCGTCCATGTCGA
CTGATAACT

BO16294.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12347-PA 330 CG12347-RA 1..327 345..19 1635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12347-RB 988 CG12347-RB 65..392 346..19 1640 100 Minus
CG12347-RA 714 CG12347-RA 84..411 346..19 1640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17906528..17906855 346..19 1640 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:02:22 has no hits.

BO16294.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:16 Download gff for BO16294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12347-PA 1..330 16..345 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:15 Download gff for BO16294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 84..416 14..346 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:45 Download gff for BO16294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 84..416 14..346 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:45 Download gff for BO16294.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17906528..17906860 14..346 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:15 Download gff for BO16294.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13732250..13732582 14..346 99   Minus

BO16294.5prime Sequence

359 bp (359 high quality bases) assembled on 2006-10-13

> BO16294.5prime
GAAGTTATCAGTCGACATGGACGAGTTACTAAATCTGGGTCTCAACGGCA
TACAGTTTGAACTGGAGGAATCTGCGGCGGATAGCGACGAGGACAGTGAA
GGAGGAGGAGCACTGGGCGGTTCTGATACCACATTGCTGTACTATTTTAG
AAGATTGTACCATGTTCTCAGTGGGAATATCTTCATGACCACCTACGTGG
AGCGCGGGCAGAGAGAATACTTTGCAGGATTCAGCAACGTGGAATTGGTG
GCTCCGTTCCAGGGTGAACGACAGAGCCAGCGGTACCGCTGGATCCACCT
GTCGCTCATCTTCCGCGCCTTCAGATCCAAGACAGAGTCCTGGGCAAGCT
TTCTAGACC

BO16294.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12347-PA 330 CG12347-RA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12347-RB 988 CG12347-RB 65..392 16..343 1640 100 Plus
CG12347-RA 714 CG12347-RA 84..411 16..343 1640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17906528..17906855 16..343 1640 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:18:21 has no hits.

BO16294.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:16 Download gff for BO16294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12347-PA 1..330 17..346 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:30 Download gff for BO16294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 84..416 16..348 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:36 Download gff for BO16294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 84..416 16..348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:36 Download gff for BO16294.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17906528..17906860 16..348 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:30 Download gff for BO16294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13732250..13732582 16..348 99   Plus

BO16294.complete Sequence

361 bp assembled on 2006-10-11

GenBank Submission: FJ633774

> BO16294.complete
GAAGTTATCAGTCGACATGGACGAGTTACTAAATCTGGGTCTCAACGGCA
TACAGTTTGAACTGGAGGAATCTGCGGCGGATAGCGACGAGGACAGTGAA
GGAGGAGGAGCACTGGGCGGTTCTGATACCACATTGCTGTACTATTTTAG
AAGATTGTACCATGTTCTCAGTGGGAATATCTTCATGACCACCTACGTGG
AGCGCGGGCAGAGAGAATACTTTGCAGGATTCAGCAACGTGGAATTGGTG
GCTCCGTTCCAGGGTGAACGACAGAGCCAGCGGTACCGCTGGATCCACCT
GTCGCTCATCTTCCGCGCCTTCAGATCCAAGACAGAGTCCTGGGCAAGCT
TTCTAGACCAT

BO16294.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12347-RB 330 CG12347-PB 1..327 17..343 1635 100 Plus
CG12347-RA 330 CG12347-PA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12347-RB 988 CG12347-RB 65..392 16..343 1640 100 Plus
CG12347-RA 714 CG12347-RA 84..411 16..343 1640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17906528..17906855 16..343 1640 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:43:21 has no hits.

BO16294.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:14 Download gff for BO16294.complete
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 1..330 17..346 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:35 Download gff for BO16294.complete
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 84..416 16..348 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:53 Download gff for BO16294.complete
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 85..411 17..345 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:15 Download gff for BO16294.complete
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 84..416 16..348 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:36 Download gff for BO16294.complete
Subject Subject Range Query Range Percent Splice Strand
CG12347-RA 85..411 17..345 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:36 Download gff for BO16294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17906529..17906855 17..345 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:53 Download gff for BO16294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13732251..13732577 17..345 99   Plus

BO16294.pep Sequence

Translation from 16 to 361

> BO16294.pep
MDELLNLGLNGIQFELEESAADSDEDSEGGGALGGSDTTLLYYFRRLYHV
LSGNIFMTTYVERGQREYFAGFSNVELVAPFQGERQSQRYRWIHLSLIFR
AFRSKTESWASFLDH

BO16294.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12347-PB 109 CG12347-PB 1..109 1..109 568 100 Plus
CG12347-PA 109 CG12347-PA 1..109 1..109 568 100 Plus