Clone Sequence Records
BO16305.3prime Sequence
524 bp (524 high quality bases) assembled on 2006-10-13
> BO16305.3prime
ATGGTCTAGAAAGCTTGCCATTATCTGTTTTAAGCGCGCTTGTTTCAGAA
AATTCCTACACGCTATGCTGCACTGCCGGTAAATTTCTTCAAATGATGCT
TCACCAATGTCATAATAGGGATCCTCAATGATGCGTTCATCTGGTTTCAG
GCCAAAATTCCCGAGAATCAGCAACTTGGCAGTGGTGCCTTTGGGAGCCA
TGCGCCTCAGGGCGGCCAGGTTGCTCAGATCCATGGCGAAGATGTAGTCG
AATTCGAGGAAGTCCTCCGGAGCTAGAACTCTCGCCTTGCCATTGTATTC
GATGTTGTGCCTGGCCAGGACATTCAGTGCACGCTCATCTGGTTGGTGGC
CGGAATGCCAATCCTCGATCCCGGCGCTCTCCACATGCCACTCCCCCTGT
AGTCCCGCCCTTGCGACCAAGTCACGCATCACAGCCTCGGCAATTGGGGA
GCGGCATAGGTTGCCCACACACACCATTAGCACACTGCTCTTCTGCGATC
TTTTGCCCATGTCGACTGATAACT
BO16305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33747-PB | 495 | primo-2-RB | 1..492 | 510..19 | 2460 | 100 | Minus |
CG33747-PC | 495 | primo-2-RC | 1..492 | 510..19 | 2460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
primo-1-RA | 1336 | CG33748-RA | 146..637 | 510..19 | 2460 | 100 | Minus |
primo-2-RC | 1336 | CG33747-RC | 146..637 | 510..19 | 2460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13711218..13711572 | 111..465 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 13710935..13711027 | 19..111 | 465 | 100 | Plus |
3R | 32079331 | 3R | 13711644..13711690 | 464..510 | 235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 3833..3922 | 14..101 | 112 | 60 | Plus |
BO16305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:28 Download gff for
BO16305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33747-PC | 1..495 | 18..510 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:39 Download gff for
BO16305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-1-RA | 146..637 | 19..510 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:54 Download gff for
BO16305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RC | 146..637 | 19..510 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:54 Download gff for
BO16305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13711645..13711690 | 465..510 | 100 | | Plus |
3R | 13710935..13711027 | 19..111 | 100 | <- | Plus |
3R | 13711219..13711571 | 112..464 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:39 Download gff for
BO16305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9536657..9536749 | 19..111 | 100 | <- | Plus |
arm_3R | 9536941..9537293 | 112..464 | 100 | <- | Plus |
arm_3R | 9537367..9537412 | 465..510 | 100 | | Plus |
BO16305.5prime Sequence
524 bp (524 high quality bases) assembled on 2006-10-13
> BO16305.5prime
GAAGTTATCAGTCGACATGGGCAAAAGATCGCAGAAGAGCAGTGTGCTAA
TGGTGTGTGTGGGCAACCTATGCCGCTCCCCAATTGCCGAGGCTGTGATG
CGTGACTTGGTCGCAAGGGCGGGACTACAGGGGGAGTGGCATGTGGAGAG
CGCCGGGATCGAGGATTGGCATTCCGGCCACCAACCAGATGAGCGTGCAC
TGAATGTCCTGGCCAGGCACAACATCGAATACAATGGCAAGGCGAGAGTT
CTAGCTCCGGAGGACTTCCTCGAATTCGACTACATCTTCGCCATGGATCT
GAGCAACCTGGCCGCCCTGAGGCGCATGGCTCCCAAAGGCACCACTGCCA
AGTTGCTGATTCTCGGGAATTTTGGCCTGAAACCAGATGAACGCATCATT
GAGGATCCCTATTATGACATTGGTGAAGCATCATTTGAAGAAATTTACCG
GCAGTGCAGCATAGCGTGTAGGAATTTTCTGAAACAAGCGCGCTTAAAAC
AGATAATGGCAAGCTTTCTAGACC
BO16305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33747-PB | 495 | primo-2-RB | 1..492 | 17..508 | 2460 | 100 | Plus |
CG33747-PC | 495 | primo-2-RC | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
primo-1-RA | 1336 | CG33748-RA | 146..637 | 17..508 | 2460 | 100 | Plus |
primo-2-RC | 1336 | CG33747-RC | 146..637 | 17..508 | 2460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13711218..13711572 | 416..62 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 13710935..13711027 | 508..416 | 465 | 100 | Minus |
3R | 32079331 | 3R | 13711644..13711690 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 18:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 3833..3922 | 513..426 | 112 | 60 | Minus |
BO16305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:28 Download gff for
BO16305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33747-PC | 1..495 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:07 Download gff for
BO16305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-1-RA | 146..637 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:28 Download gff for
BO16305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RC | 146..637 | 17..508 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:28 Download gff for
BO16305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13710935..13711027 | 416..508 | 100 | <- | Minus |
3R | 13711219..13711571 | 63..415 | 100 | <- | Minus |
3R | 13711645..13711690 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:07 Download gff for
BO16305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9536657..9536749 | 416..508 | 100 | <- | Minus |
arm_3R | 9536941..9537293 | 63..415 | 100 | <- | Minus |
arm_3R | 9537367..9537412 | 17..62 | 100 | | Minus |
BO16305.complete Sequence
526 bp assembled on 2006-10-11
GenBank Submission: FJ633776
> BO16305.complete
GAAGTTATCAGTCGACATGGGCAAAAGATCGCAGAAGAGCAGTGTGCTAA
TGGTGTGTGTGGGCAACCTATGCCGCTCCCCAATTGCCGAGGCTGTGATG
CGTGACTTGGTCGCAAGGGCGGGACTACAGGGGGAGTGGCATGTGGAGAG
CGCCGGGATCGAGGATTGGCATTCCGGCCACCAACCAGATGAGCGTGCAC
TGAATGTCCTGGCCAGGCACAACATCGAATACAATGGCAAGGCGAGAGTT
CTAGCTCCGGAGGACTTCCTCGAATTCGACTACATCTTCGCCATGGATCT
GAGCAACCTGGCCGCCCTGAGGCGCATGGCTCCCAAAGGCACCACTGCCA
AGTTGCTGATTCTCGGGAATTTTGGCCTGAAACCAGATGAACGCATCATT
GAGGATCCCTATTATGACATTGGTGAAGCATCATTTGAAGAAATTTACCG
GCAGTGCAGCATAGCGTGTAGGAATTTTCTGAAACAAGCGCGCTTAAAAC
AGATAATGGCAAGCTTTCTAGACCAT
BO16305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
primo-2-RC | 495 | CG33747-PC | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
primo-1-RA | 1336 | CG33748-RA | 146..637 | 17..508 | 2460 | 100 | Plus |
primo-2-RC | 1336 | CG33747-RC | 146..637 | 17..508 | 2460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13711218..13711572 | 416..62 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 13710935..13711027 | 508..416 | 465 | 100 | Minus |
3R | 32079331 | 3R | 13711644..13711690 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 3833..3922 | 513..426 | 112 | 60 | Minus |
BO16305.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:19 Download gff for
BO16305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RC | 1..495 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:09 Download gff for
BO16305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RC | 146..637 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:09 Download gff for
BO16305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-1-RA | 146..637 | 17..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:20 Download gff for
BO16305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RB | 141..632 | 17..508 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:50 Download gff for
BO16305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
primo-2-RC | 146..637 | 17..510 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:50 Download gff for
BO16305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13710933..13711027 | 416..510 | 97 | <- | Minus |
3R | 13711219..13711571 | 63..415 | 100 | <- | Minus |
3R | 13711645..13711690 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:09 Download gff for
BO16305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9536655..9536749 | 416..510 | 97 | <- | Minus |
arm_3R | 9536941..9537293 | 63..415 | 100 | <- | Minus |
arm_3R | 9537367..9537412 | 17..62 | 100 | | Minus |
BO16305.pep Sequence
Translation from 16 to 526
> BO16305.pep
MGKRSQKSSVLMVCVGNLCRSPIAEAVMRDLVARAGLQGEWHVESAGIED
WHSGHQPDERALNVLARHNIEYNGKARVLAPEDFLEFDYIFAMDLSNLAA
LRRMAPKGTTAKLLILGNFGLKPDERIIEDPYYDIGEASFEEIYRQCSIA
CRNFLKQARLKQIMASFLDH
BO16305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
primo-2-PC | 164 | CG33747-PC | 1..164 | 1..164 | 853 | 100 | Plus |
primo-1-PB | 155 | CG33748-PB | 5..151 | 10..157 | 397 | 50 | Plus |
primo-1-PA | 155 | CG33748-PA | 5..151 | 10..157 | 397 | 50 | Plus |
CG31469-PA | 164 | CG31469-PA | 3..151 | 10..156 | 324 | 42.7 | Plus |
CG14297-PA | 250 | CG14297-PA | 6..152 | 10..155 | 209 | 31.5 | Plus |