Clone BO16305 Report

Search the DGRC for BO16305

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptprimo-2-RB
Protein status:BO16305.pep: validated full length
Sequenced Size:526

Clone Sequence Records

BO16305.3prime Sequence

524 bp (524 high quality bases) assembled on 2006-10-13

> BO16305.3prime
ATGGTCTAGAAAGCTTGCCATTATCTGTTTTAAGCGCGCTTGTTTCAGAA
AATTCCTACACGCTATGCTGCACTGCCGGTAAATTTCTTCAAATGATGCT
TCACCAATGTCATAATAGGGATCCTCAATGATGCGTTCATCTGGTTTCAG
GCCAAAATTCCCGAGAATCAGCAACTTGGCAGTGGTGCCTTTGGGAGCCA
TGCGCCTCAGGGCGGCCAGGTTGCTCAGATCCATGGCGAAGATGTAGTCG
AATTCGAGGAAGTCCTCCGGAGCTAGAACTCTCGCCTTGCCATTGTATTC
GATGTTGTGCCTGGCCAGGACATTCAGTGCACGCTCATCTGGTTGGTGGC
CGGAATGCCAATCCTCGATCCCGGCGCTCTCCACATGCCACTCCCCCTGT
AGTCCCGCCCTTGCGACCAAGTCACGCATCACAGCCTCGGCAATTGGGGA
GCGGCATAGGTTGCCCACACACACCATTAGCACACTGCTCTTCTGCGATC
TTTTGCCCATGTCGACTGATAACT

BO16305.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG33747-PB 495 primo-2-RB 1..492 510..19 2460 100 Minus
CG33747-PC 495 primo-2-RC 1..492 510..19 2460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-RA 1336 CG33748-RA 146..637 510..19 2460 100 Minus
primo-2-RC 1336 CG33747-RC 146..637 510..19 2460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13711218..13711572 111..465 1775 100 Plus
3R 32079331 3R 13710935..13711027 19..111 465 100 Plus
3R 32079331 3R 13711644..13711690 464..510 235 100 Plus
Blast to na_te.dros performed 2015-02-10 21:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3833..3922 14..101 112 60 Plus

BO16305.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:28 Download gff for BO16305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33747-PC 1..495 18..510 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:39 Download gff for BO16305.3prime
Subject Subject Range Query Range Percent Splice Strand
primo-1-RA 146..637 19..510 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:54 Download gff for BO16305.3prime
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 146..637 19..510 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:54 Download gff for BO16305.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13711645..13711690 465..510 100   Plus
3R 13710935..13711027 19..111 100 <- Plus
3R 13711219..13711571 112..464 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:39 Download gff for BO16305.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9536657..9536749 19..111 100 <- Plus
arm_3R 9536941..9537293 112..464 100 <- Plus
arm_3R 9537367..9537412 465..510 100   Plus

BO16305.5prime Sequence

524 bp (524 high quality bases) assembled on 2006-10-13

> BO16305.5prime
GAAGTTATCAGTCGACATGGGCAAAAGATCGCAGAAGAGCAGTGTGCTAA
TGGTGTGTGTGGGCAACCTATGCCGCTCCCCAATTGCCGAGGCTGTGATG
CGTGACTTGGTCGCAAGGGCGGGACTACAGGGGGAGTGGCATGTGGAGAG
CGCCGGGATCGAGGATTGGCATTCCGGCCACCAACCAGATGAGCGTGCAC
TGAATGTCCTGGCCAGGCACAACATCGAATACAATGGCAAGGCGAGAGTT
CTAGCTCCGGAGGACTTCCTCGAATTCGACTACATCTTCGCCATGGATCT
GAGCAACCTGGCCGCCCTGAGGCGCATGGCTCCCAAAGGCACCACTGCCA
AGTTGCTGATTCTCGGGAATTTTGGCCTGAAACCAGATGAACGCATCATT
GAGGATCCCTATTATGACATTGGTGAAGCATCATTTGAAGAAATTTACCG
GCAGTGCAGCATAGCGTGTAGGAATTTTCTGAAACAAGCGCGCTTAAAAC
AGATAATGGCAAGCTTTCTAGACC

BO16305.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG33747-PB 495 primo-2-RB 1..492 17..508 2460 100 Plus
CG33747-PC 495 primo-2-RC 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-RA 1336 CG33748-RA 146..637 17..508 2460 100 Plus
primo-2-RC 1336 CG33747-RC 146..637 17..508 2460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13711218..13711572 416..62 1775 100 Minus
3R 32079331 3R 13710935..13711027 508..416 465 100 Minus
3R 32079331 3R 13711644..13711690 63..17 235 100 Minus
Blast to na_te.dros performed 2015-02-02 18:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3833..3922 513..426 112 60 Minus

BO16305.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:28 Download gff for BO16305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33747-PC 1..495 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:07 Download gff for BO16305.5prime
Subject Subject Range Query Range Percent Splice Strand
primo-1-RA 146..637 17..508 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:28 Download gff for BO16305.5prime
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 146..637 17..508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:28 Download gff for BO16305.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13710935..13711027 416..508 100 <- Minus
3R 13711219..13711571 63..415 100 <- Minus
3R 13711645..13711690 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:07 Download gff for BO16305.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9536657..9536749 416..508 100 <- Minus
arm_3R 9536941..9537293 63..415 100 <- Minus
arm_3R 9537367..9537412 17..62 100   Minus

BO16305.complete Sequence

526 bp assembled on 2006-10-11

GenBank Submission: FJ633776

> BO16305.complete
GAAGTTATCAGTCGACATGGGCAAAAGATCGCAGAAGAGCAGTGTGCTAA
TGGTGTGTGTGGGCAACCTATGCCGCTCCCCAATTGCCGAGGCTGTGATG
CGTGACTTGGTCGCAAGGGCGGGACTACAGGGGGAGTGGCATGTGGAGAG
CGCCGGGATCGAGGATTGGCATTCCGGCCACCAACCAGATGAGCGTGCAC
TGAATGTCCTGGCCAGGCACAACATCGAATACAATGGCAAGGCGAGAGTT
CTAGCTCCGGAGGACTTCCTCGAATTCGACTACATCTTCGCCATGGATCT
GAGCAACCTGGCCGCCCTGAGGCGCATGGCTCCCAAAGGCACCACTGCCA
AGTTGCTGATTCTCGGGAATTTTGGCCTGAAACCAGATGAACGCATCATT
GAGGATCCCTATTATGACATTGGTGAAGCATCATTTGAAGAAATTTACCG
GCAGTGCAGCATAGCGTGTAGGAATTTTCTGAAACAAGCGCGCTTAAAAC
AGATAATGGCAAGCTTTCTAGACCAT

BO16305.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
primo-2-RC 495 CG33747-PC 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
primo-1-RA 1336 CG33748-RA 146..637 17..508 2460 100 Plus
primo-2-RC 1336 CG33747-RC 146..637 17..508 2460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13711218..13711572 416..62 1775 100 Minus
3R 32079331 3R 13710935..13711027 508..416 465 100 Minus
3R 32079331 3R 13711644..13711690 63..17 235 100 Minus
Blast to na_te.dros performed 2014-11-27 20:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3833..3922 513..426 112 60 Minus

BO16305.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:19 Download gff for BO16305.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 1..495 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:09 Download gff for BO16305.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 146..637 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:09 Download gff for BO16305.complete
Subject Subject Range Query Range Percent Splice Strand
primo-1-RA 146..637 17..510 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:20 Download gff for BO16305.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RB 141..632 17..508 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:50 Download gff for BO16305.complete
Subject Subject Range Query Range Percent Splice Strand
primo-2-RC 146..637 17..510 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:50 Download gff for BO16305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13710933..13711027 416..510 97 <- Minus
3R 13711219..13711571 63..415 100 <- Minus
3R 13711645..13711690 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:09 Download gff for BO16305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9536655..9536749 416..510 97 <- Minus
arm_3R 9536941..9537293 63..415 100 <- Minus
arm_3R 9537367..9537412 17..62 100   Minus

BO16305.pep Sequence

Translation from 16 to 526

> BO16305.pep
MGKRSQKSSVLMVCVGNLCRSPIAEAVMRDLVARAGLQGEWHVESAGIED
WHSGHQPDERALNVLARHNIEYNGKARVLAPEDFLEFDYIFAMDLSNLAA
LRRMAPKGTTAKLLILGNFGLKPDERIIEDPYYDIGEASFEEIYRQCSIA
CRNFLKQARLKQIMASFLDH

BO16305.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
primo-2-PC 164 CG33747-PC 1..164 1..164 853 100 Plus
primo-1-PB 155 CG33748-PB 5..151 10..157 397 50 Plus
primo-1-PA 155 CG33748-PA 5..151 10..157 397 50 Plus
CG31469-PA 164 CG31469-PA 3..151 10..156 324 42.7 Plus
CG14297-PA 250 CG14297-PA 6..152 10..155 209 31.5 Plus