Clone Sequence Records
BO16306.3prime Sequence
431 bp (431 high quality bases) assembled on 2006-10-13
> BO16306.3prime
ATGGTCTAGAAAGCTTGCAACCTCCGATTGGTAGTAGCTCAGCACGATCA
CGACGTCCGCAGATACAAAGGCAATCATAATGAACGCATAGGATATCAAA
ACGTAATCGGTTCTGCCAAGGGAGGCAATCACCATGTGATTGGTCATTTC
GAGCATCAGGCCACAAAGAGAAGTCACCAGATGAACTGGCAGCAAATGCG
GATTTTCCCGAAAAAGTGCAGTCAAAAGAACCAATGCGGAAATGATATTC
CAAATGGTGGAAATTATCCAGAGGAGTAGTATATCAGCGCAATATTGCGA
CTTAGTATATATAGTCGCTACTGTATCTAATACATCCATTGTAAGACCTG
CGTACGCAATTGAAAATGCGCCAATTCTTAGACTAAAACAATAGCAGAAC
TTCTTGATTATTGGCATGTCGACTGATAACT
BO16306.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31733-PA | 402 | ms(2)35Ci-RA | 1..399 | 417..19 | 1995 | 100 | Minus |
CG31733-PB | 627 | ms(2)35Ci-RB | 1..349 | 417..69 | 1745 | 100 | Minus |
CG31733-PB | 627 | ms(2)35Ci-RB | 354..403 | 68..19 | 250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(2)35Ci-RC | 1489 | CG31733-RC | 213..611 | 417..19 | 1995 | 100 | Minus |
ms(2)35Ci-RA | 1127 | CG31733-RA | 213..611 | 417..19 | 1995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15292737..15292947 | 417..207 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 15293003..15293147 | 213..69 | 710 | 99.3 | Minus |
2L | 23513712 | 2L | 15293209..15293258 | 68..19 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:34:11 has no hits.
BO16306.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:30 Download gff for
BO16306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31733-PA | 1..402 | 18..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:00 Download gff for
BO16306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 204..611 | 19..427 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:24 Download gff for
BO16306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 204..611 | 19..427 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:24 Download gff for
BO16306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15292735..15292946 | 208..420 | 99 | -> | Minus |
2L | 15293009..15293147 | 69..207 | 100 | -> | Minus |
2L | 15293209..15293258 | 19..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:00 Download gff for
BO16306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15292735..15292946 | 208..420 | 99 | -> | Minus |
arm_2L | 15293009..15293147 | 69..207 | 100 | -> | Minus |
arm_2L | 15293209..15293258 | 19..68 | 100 | | Minus |
BO16306.5prime Sequence
431 bp (431 high quality bases) assembled on 2006-10-13
> BO16306.5prime
GAAGTTATCAGTCGACATGCCAATAATCAAGAAGTTCTGCTATTGTTTTA
GTCTAAGAATTGGCGCATTTTCAATTGCGTACGCAGGTCTTACAATGGAT
GTATTAGATACAGTAGCGACTATATATACTAAGTCGCAATATTGCGCTGA
TATACTACTCCTCTGGATAATTTCCACCATTTGGAATATCATTTCCGCAT
TGGTTCTTTTGACTGCACTTTTTCGGGAAAATCCGCATTTGCTGCCAGTT
CATCTGGTGACTTCTCTTTGTGGCCTGATGCTCGAAATGACCAATCACAT
GGTGATTGCCTCCCTTGGCAGAACCGATTACGTTTTGATATCCTATGCGT
TCATTATGATTGCCTTTGTATCTGCGGACGTCGTGATCGTGCTGAGCTAC
TACCAATCGGAGGTTGCAAGCTTTCTAGACC
BO16306.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31733-PA | 402 | ms(2)35Ci-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
CG31733-PB | 627 | ms(2)35Ci-RB | 1..349 | 17..365 | 1745 | 100 | Plus |
CG31733-PB | 627 | ms(2)35Ci-RB | 354..403 | 366..415 | 250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(2)35Ci-RC | 1489 | CG31733-RC | 213..611 | 17..415 | 1995 | 100 | Plus |
ms(2)35Ci-RA | 1127 | CG31733-RA | 213..611 | 17..415 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15292737..15292947 | 17..227 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 15293003..15293147 | 221..365 | 710 | 99.3 | Plus |
2L | 23513712 | 2L | 15293209..15293258 | 366..415 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:41:52 has no hits.
BO16306.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:31 Download gff for
BO16306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31733-PA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:25 Download gff for
BO16306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 204..611 | 7..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:15 Download gff for
BO16306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 204..611 | 7..415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:15 Download gff for
BO16306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15292735..15292946 | 14..226 | 99 | -> | Plus |
2L | 15293009..15293147 | 227..365 | 100 | -> | Plus |
2L | 15293209..15293258 | 366..415 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:25 Download gff for
BO16306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15292735..15292946 | 14..226 | 99 | -> | Plus |
arm_2L | 15293009..15293147 | 227..365 | 100 | -> | Plus |
arm_2L | 15293209..15293258 | 366..415 | 100 | | Plus |
BO16306.complete Sequence
433 bp assembled on 2006-10-11
GenBank Submission: FJ633777
> BO16306.complete
GAAGTTATCAGTCGACATGCCAATAATCAAGAAGTTCTGCTATTGTTTTA
GTCTAAGAATTGGCGCATTTTCAATTGCGTACGCAGGTCTTACAATGGAT
GTATTAGATACAGTAGCGACTATATATACTAAGTCGCAATATTGCGCTGA
TATACTACTCCTCTGGATAATTTCCACCATTTGGAATATCATTTCCGCAT
TGGTTCTTTTGACTGCACTTTTTCGGGAAAATCCGCATTTGCTGCCAGTT
CATCTGGTGACTTCTCTTTGTGGCCTGATGCTCGAAATGACCAATCACAT
GGTGATTGCCTCCCTTGGCAGAACCGATTACGTTTTGATATCCTATGCGT
TCATTATGATTGCCTTTGTATCTGCGGACGTCGTGATCGTGCTGAGCTAC
TACCAATCGGAGGTTGCAAGCTTTCTAGACCAT
BO16306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(2)35Ci-RC | 402 | CG31733-PC | 1..399 | 17..415 | 1995 | 100 | Plus |
ms(2)35Ci-RA | 402 | CG31733-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(2)35Ci-RC | 1489 | CG31733-RC | 213..611 | 17..415 | 1995 | 100 | Plus |
ms(2)35Ci-RA | 1127 | CG31733-RA | 213..611 | 17..415 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15292737..15292947 | 17..227 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 15293003..15293147 | 221..365 | 710 | 99.3 | Plus |
2L | 23513712 | 2L | 15293209..15293258 | 366..415 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:41:55 has no hits.
BO16306.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:23 Download gff for
BO16306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:10 Download gff for
BO16306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 127..534 | 7..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:41 Download gff for
BO16306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 213..611 | 17..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:23 Download gff for
BO16306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 127..534 | 7..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:57 Download gff for
BO16306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(2)35Ci-RA | 213..611 | 17..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:57 Download gff for
BO16306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15292737..15292946 | 17..226 | 100 | -> | Plus |
2L | 15293009..15293147 | 227..365 | 100 | -> | Plus |
2L | 15293209..15293258 | 366..417 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:41 Download gff for
BO16306.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15292737..15292946 | 17..226 | 100 | -> | Plus |
arm_2L | 15293009..15293147 | 227..365 | 100 | -> | Plus |
arm_2L | 15293209..15293258 | 366..417 | 96 | | Plus |
BO16306.pep Sequence
Translation from 16 to 433
> BO16306.pep
MPIIKKFCYCFSLRIGAFSIAYAGLTMDVLDTVATIYTKSQYCADILLLW
IISTIWNIISALVLLTALFRENPHLLPVHLVTSLCGLMLEMTNHMVIASL
GRTDYVLISYAFIMIAFVSADVVIVLSYYQSEVASFLDH
BO16306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(2)35Ci-PC | 133 | CG31733-PC | 1..133 | 1..133 | 673 | 100 | Plus |
ms(2)35Ci-PA | 133 | CG31733-PA | 1..133 | 1..133 | 673 | 100 | Plus |