Clone BO16306 Report

Search the DGRC for BO16306

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptms(2)35Ci-RA
Protein status:BO16306.pep: validated full length
Sequenced Size:433

Clone Sequence Records

BO16306.3prime Sequence

431 bp (431 high quality bases) assembled on 2006-10-13

> BO16306.3prime
ATGGTCTAGAAAGCTTGCAACCTCCGATTGGTAGTAGCTCAGCACGATCA
CGACGTCCGCAGATACAAAGGCAATCATAATGAACGCATAGGATATCAAA
ACGTAATCGGTTCTGCCAAGGGAGGCAATCACCATGTGATTGGTCATTTC
GAGCATCAGGCCACAAAGAGAAGTCACCAGATGAACTGGCAGCAAATGCG
GATTTTCCCGAAAAAGTGCAGTCAAAAGAACCAATGCGGAAATGATATTC
CAAATGGTGGAAATTATCCAGAGGAGTAGTATATCAGCGCAATATTGCGA
CTTAGTATATATAGTCGCTACTGTATCTAATACATCCATTGTAAGACCTG
CGTACGCAATTGAAAATGCGCCAATTCTTAGACTAAAACAATAGCAGAAC
TTCTTGATTATTGGCATGTCGACTGATAACT

BO16306.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31733-PA 402 ms(2)35Ci-RA 1..399 417..19 1995 100 Minus
CG31733-PB 627 ms(2)35Ci-RB 1..349 417..69 1745 100 Minus
CG31733-PB 627 ms(2)35Ci-RB 354..403 68..19 250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-RC 1489 CG31733-RC 213..611 417..19 1995 100 Minus
ms(2)35Ci-RA 1127 CG31733-RA 213..611 417..19 1995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15292737..15292947 417..207 1055 100 Minus
2L 23513712 2L 15293003..15293147 213..69 710 99.3 Minus
2L 23513712 2L 15293209..15293258 68..19 250 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:34:11 has no hits.

BO16306.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:30 Download gff for BO16306.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31733-PA 1..402 18..417 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:00 Download gff for BO16306.3prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 204..611 19..427 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:24 Download gff for BO16306.3prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 204..611 19..427 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:24 Download gff for BO16306.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15292735..15292946 208..420 99 -> Minus
2L 15293009..15293147 69..207 100 -> Minus
2L 15293209..15293258 19..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:00 Download gff for BO16306.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15292735..15292946 208..420 99 -> Minus
arm_2L 15293009..15293147 69..207 100 -> Minus
arm_2L 15293209..15293258 19..68 100   Minus

BO16306.5prime Sequence

431 bp (431 high quality bases) assembled on 2006-10-13

> BO16306.5prime
GAAGTTATCAGTCGACATGCCAATAATCAAGAAGTTCTGCTATTGTTTTA
GTCTAAGAATTGGCGCATTTTCAATTGCGTACGCAGGTCTTACAATGGAT
GTATTAGATACAGTAGCGACTATATATACTAAGTCGCAATATTGCGCTGA
TATACTACTCCTCTGGATAATTTCCACCATTTGGAATATCATTTCCGCAT
TGGTTCTTTTGACTGCACTTTTTCGGGAAAATCCGCATTTGCTGCCAGTT
CATCTGGTGACTTCTCTTTGTGGCCTGATGCTCGAAATGACCAATCACAT
GGTGATTGCCTCCCTTGGCAGAACCGATTACGTTTTGATATCCTATGCGT
TCATTATGATTGCCTTTGTATCTGCGGACGTCGTGATCGTGCTGAGCTAC
TACCAATCGGAGGTTGCAAGCTTTCTAGACC

BO16306.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31733-PA 402 ms(2)35Ci-RA 1..399 17..415 1995 100 Plus
CG31733-PB 627 ms(2)35Ci-RB 1..349 17..365 1745 100 Plus
CG31733-PB 627 ms(2)35Ci-RB 354..403 366..415 250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-RC 1489 CG31733-RC 213..611 17..415 1995 100 Plus
ms(2)35Ci-RA 1127 CG31733-RA 213..611 17..415 1995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15292737..15292947 17..227 1055 100 Plus
2L 23513712 2L 15293003..15293147 221..365 710 99.3 Plus
2L 23513712 2L 15293209..15293258 366..415 250 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:41:52 has no hits.

BO16306.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:31 Download gff for BO16306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31733-PA 1..402 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:25 Download gff for BO16306.5prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 204..611 7..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:15 Download gff for BO16306.5prime
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 204..611 7..415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:15 Download gff for BO16306.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15292735..15292946 14..226 99 -> Plus
2L 15293009..15293147 227..365 100 -> Plus
2L 15293209..15293258 366..415 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:25 Download gff for BO16306.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15292735..15292946 14..226 99 -> Plus
arm_2L 15293009..15293147 227..365 100 -> Plus
arm_2L 15293209..15293258 366..415 100   Plus

BO16306.complete Sequence

433 bp assembled on 2006-10-11

GenBank Submission: FJ633777

> BO16306.complete
GAAGTTATCAGTCGACATGCCAATAATCAAGAAGTTCTGCTATTGTTTTA
GTCTAAGAATTGGCGCATTTTCAATTGCGTACGCAGGTCTTACAATGGAT
GTATTAGATACAGTAGCGACTATATATACTAAGTCGCAATATTGCGCTGA
TATACTACTCCTCTGGATAATTTCCACCATTTGGAATATCATTTCCGCAT
TGGTTCTTTTGACTGCACTTTTTCGGGAAAATCCGCATTTGCTGCCAGTT
CATCTGGTGACTTCTCTTTGTGGCCTGATGCTCGAAATGACCAATCACAT
GGTGATTGCCTCCCTTGGCAGAACCGATTACGTTTTGATATCCTATGCGT
TCATTATGATTGCCTTTGTATCTGCGGACGTCGTGATCGTGCTGAGCTAC
TACCAATCGGAGGTTGCAAGCTTTCTAGACCAT

BO16306.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-RC 402 CG31733-PC 1..399 17..415 1995 100 Plus
ms(2)35Ci-RA 402 CG31733-PA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-RC 1489 CG31733-RC 213..611 17..415 1995 100 Plus
ms(2)35Ci-RA 1127 CG31733-RA 213..611 17..415 1995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15292737..15292947 17..227 1055 100 Plus
2L 23513712 2L 15293003..15293147 221..365 710 99.3 Plus
2L 23513712 2L 15293209..15293258 366..415 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:41:55 has no hits.

BO16306.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:23 Download gff for BO16306.complete
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 1..402 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:10 Download gff for BO16306.complete
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 127..534 7..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:41 Download gff for BO16306.complete
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 213..611 17..417 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:23 Download gff for BO16306.complete
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 127..534 7..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:57 Download gff for BO16306.complete
Subject Subject Range Query Range Percent Splice Strand
ms(2)35Ci-RA 213..611 17..417 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:57 Download gff for BO16306.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15292737..15292946 17..226 100 -> Plus
2L 15293009..15293147 227..365 100 -> Plus
2L 15293209..15293258 366..417 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:41 Download gff for BO16306.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15292737..15292946 17..226 100 -> Plus
arm_2L 15293009..15293147 227..365 100 -> Plus
arm_2L 15293209..15293258 366..417 96   Plus

BO16306.pep Sequence

Translation from 16 to 433

> BO16306.pep
MPIIKKFCYCFSLRIGAFSIAYAGLTMDVLDTVATIYTKSQYCADILLLW
IISTIWNIISALVLLTALFRENPHLLPVHLVTSLCGLMLEMTNHMVIASL
GRTDYVLISYAFIMIAFVSADVVIVLSYYQSEVASFLDH

BO16306.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
ms(2)35Ci-PC 133 CG31733-PC 1..133 1..133 673 100 Plus
ms(2)35Ci-PA 133 CG31733-PA 1..133 1..133 673 100 Plus