Clone Sequence Records
BO16308.3prime Sequence
876 bp (735 high quality bases) assembled on 2006-10-13
> BO16308.3prime
ATGGTCTAGAAAGCTTGCATCGTCCATGCTCTCGTTATTGCGGTCCGGTG
AGGCGTTTCCATTTTTGGGCGAGGCCGAACGGGAGCGTGAGCGCGAACGC
GACTTGTTTTCAGCCGATGCGGATCGATCGCGTGAACGGGAGTCGCGGTG
GATGGACTTGGAACGTGAGCGGGAACGGGACTCGCGCTTCGAGACGGACC
GCGATCGGGAACGGGAGTCACGCTCACGTTTGGGCGAACGGGAGCGGGTG
CGGGAGTGGGACTTTGACTTGGACTTGGACACGTCACGCGATTTGTTGGA
TCGCGAGCGGGAGCGAGAACGAGACTTGACTGGCGACTTGGACTTGGAGC
GTCCGCCACGAGATTTGGAGCGGCTGCGAGACTTGGAGCGCGAGTGCGAC
GAGCGGCGAGAGCGAGAACGCCTGCGGGATCGGGAGCGCGATCGGGAGCT
GGACGAACGGGAGCGTCCACGTCCGCTGCCGCCGCCACCACCGCTGCGTC
CTCCGCGACGATCCTCGACCAAGTGGATCCGCCTGCCGTTTAGCTCGGTG
TCATCCAACTTCTCAATGGCCGTCTTCATGTCCGACAACGAGGCGAACTC
AACCACGCCCTCATTGCGACGCTGCTTGTGGGCATCGGCATAGGTGACCT
CGCCAGCCTGGCGCATGTAATCCTTGAGATCCTGCCAGCTAACGCGGCTA
GACAAATTCTCCACAATCAGTCGGTACTCAGTGCGCAACGGTGGGCCATA
ACGAGAGGATGATTTTTCGTTGTAACGACCGCCCCCGCCCCCCCGCCGAC
CACCATATCGATCGTCGTAGCGGTCGCGGTTGCTGCCCCGAGCGGTACCC
CTGGCGGGTTCAACAACCACACGTTC
BO16308.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10851-PA | 1053 | B52-RA | 193..1050 | 876..19 | 4265 | 99.8 | Minus |
| CG10851-PC | 1053 | B52-RC | 193..1050 | 876..19 | 4265 | 99.8 | Minus |
| CG10851-PE | 1041 | B52-RE | 376..1038 | 681..19 | 3315 | 100 | Minus |
| CG10851-PG | 651 | B52-RG | 1..648 | 666..19 | 3240 | 100 | Minus |
| CG10851-PH | 651 | B52-RH | 1..648 | 666..19 | 3240 | 100 | Minus |
| CG10851-PB | 990 | B52-RB | 321..954 | 763..130 | 3170 | 100 | Minus |
| CG10851-PF | 444 | B52-RF | 193..388 | 876..681 | 955 | 99.4 | Minus |
| CG10851-PD | 408 | B52-RD | 193..387 | 876..682 | 950 | 99.4 | Minus |
| CG10851-PE | 1041 | B52-RE | 193..376 | 876..693 | 895 | 99.4 | Minus |
| CG10851-PB | 990 | B52-RB | 193..306 | 876..763 | 545 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B52-RN | 1725 | CG10851-RN | 507..1364 | 876..19 | 4275 | 99.9 | Minus |
| B52-RC | 1557 | CG10851-RC | 339..1196 | 876..19 | 4275 | 99.9 | Minus |
| B52-RA | 1565 | CG10851-RA | 347..1204 | 876..19 | 4275 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13665589..13665901 | 608..296 | 1565 | 100 | Minus |
| 3R | 32079331 | 3R | 13666084..13666248 | 295..131 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 13666418..13666530 | 131..19 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 13662296..13662404 | 872..764 | 530 | 99.1 | Minus |
| 3R | 32079331 | 3R | 13662970..13663052 | 763..681 | 415 | 100 | Minus |
| 3R | 32079331 | 3R | 13665449..13665526 | 685..608 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:01:54 has no hits.
BO16308.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:33 Download gff for
BO16308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10851-PC | 193..1053 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:12 Download gff for
BO16308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 347..1210 | 11..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:07 Download gff for
BO16308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 347..1210 | 11..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:07 Download gff for
BO16308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13662293..13662404 | 764..876 | 97 | -> | Minus |
| 3R | 13662970..13663051 | 682..763 | 100 | -> | Minus |
| 3R | 13665453..13665526 | 608..681 | 100 | -> | Minus |
| 3R | 13665590..13665901 | 296..607 | 100 | -> | Minus |
| 3R | 13666084..13666248 | 131..295 | 100 | -> | Minus |
| 3R | 13666419..13666536 | 11..130 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:12 Download gff for
BO16308.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9488015..9488126 | 764..876 | 97 | -> | Minus |
| arm_3R | 9488692..9488773 | 682..763 | 100 | -> | Minus |
| arm_3R | 9491175..9491248 | 608..681 | 100 | -> | Minus |
| arm_3R | 9491312..9491623 | 296..607 | 100 | -> | Minus |
| arm_3R | 9491806..9491970 | 131..295 | 100 | -> | Minus |
| arm_3R | 9492141..9492258 | 11..130 | 96 | | Minus |
BO16308.5prime Sequence
927 bp (878 high quality bases) assembled on 2006-10-13
> BO16308.5prime
GAAGTTATCAGTCGACATGGTGGGATCTCGAGTGTATGTGGGCGGTCTGC
CCTACGGAGTGCGCGAGCGCGATTTGGAGCGCTTTTTCAAAGGCTACGGC
CGCACACGCGACATCCTCATCAAAAATGGCTACGGCTTTGTGGAATTCGA
AGACTATCGTGATGCCGACGATGCCGTCTATGAACTGAATGGCAAAGAGC
TGCTTGGCGAACGTGTGGTTGTTGAACCCGCCAGGGGTACCGCTCGTGGC
AGCAACCGCGACCGCTACGACGATCGATATGGTGGTCGGCGGGGGGGCGG
GGGCGGTCGTTACAACGAAAAATCATCCTCTCGTTATGGCCCACCGTTGC
GCACTGAGTACCGACTGATTGTGGAGAATTTGTCTAGCCGCGTTAGCTGG
CAGGATCTCAAGGATTACATGCGCCAGGCTGGCGAGGTCACCTATGCCGA
TGCCCACAAGCAGCGTCGCAATGAGGGCGTGGTTGAGTTCGCCTCGTTGT
CGGACATGAAGACGGCCATTGAGAAGTTGGATGACACCGAGCTAAACGGC
AGGCGGATCCACTTGGTCGAGGATCGTCGCGGAGGACGCAGCGGTGGTGG
CGGCGGCAGCGGACGTGGACGCTCCCGTTCGTCCAGCTCCCGATCGCGCT
CCCGATCCCGCAGGCGTTCTCGCTCTCGCCGCTCGTCGCACTCGCGCTCC
AAGTCTCGCAGCCGCTCCAAATCTCGTGGCGGACGCTCCAAGTCCAAGTC
GCCAGTCAAGTCTCGTTCTCGCTCCCGCTCGCGATCCCACAAATCGCGTG
ACGTGTCCAAGTCCAAGTCAAAGTCCCACTCCCGCACCCGCTCCCGTTCG
CCCAAACGTGAGCGTGACTCCCGTTCCCGATCGCGGTCCGTCTCGAAGCG
CGAGTCCCGTTCCGGCTCACGTTCCAG
BO16308.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10851-PA | 1053 | B52-RA | 1..910 | 17..926 | 4500 | 99.7 | Plus |
| CG10851-PC | 1053 | B52-RC | 1..910 | 17..926 | 4500 | 99.7 | Plus |
| CG10851-PB | 990 | B52-RB | 321..925 | 322..926 | 2975 | 99.6 | Plus |
| CG10851-PE | 1041 | B52-RE | 376..898 | 404..926 | 2565 | 99.6 | Plus |
| CG10851-PG | 651 | B52-RG | 1..508 | 419..926 | 2490 | 99.6 | Plus |
| CG10851-PH | 651 | B52-RH | 1..508 | 419..926 | 2490 | 99.6 | Plus |
| CG10851-PF | 444 | B52-RF | 1..388 | 17..404 | 1940 | 100 | Plus |
| CG10851-PD | 408 | B52-RD | 1..387 | 17..403 | 1935 | 100 | Plus |
| CG10851-PE | 1041 | B52-RE | 1..376 | 17..392 | 1880 | 100 | Plus |
| CG10851-PB | 990 | B52-RB | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B52-RN | 1725 | CG10851-RN | 314..1224 | 16..926 | 4525 | 99.8 | Plus |
| B52-RC | 1557 | CG10851-RC | 146..1056 | 16..926 | 4525 | 99.8 | Plus |
| B52-RA | 1565 | CG10851-RA | 154..1064 | 16..926 | 4525 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13665589..13665899 | 477..787 | 1555 | 100 | Plus |
| 3R | 32079331 | 3R | 13666084..13666220 | 790..926 | 670 | 99.3 | Plus |
| 3R | 32079331 | 3R | 13661733..13661860 | 16..143 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 13662296..13662404 | 213..321 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 13662970..13663052 | 322..404 | 415 | 100 | Plus |
| 3R | 32079331 | 3R | 13665449..13665526 | 400..477 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 13662160..13662231 | 142..213 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:18:38 has no hits.
BO16308.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:33 Download gff for
BO16308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10851-PA | 1..910 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:34 Download gff for
BO16308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 149..1064 | 11..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:41 Download gff for
BO16308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 149..1064 | 11..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:41 Download gff for
BO16308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13661728..13661859 | 11..142 | 97 | -> | Plus |
| 3R | 13662161..13662231 | 143..213 | 100 | -> | Plus |
| 3R | 13662297..13662404 | 214..321 | 100 | -> | Plus |
| 3R | 13662970..13663051 | 322..403 | 100 | -> | Plus |
| 3R | 13665453..13665526 | 404..477 | 100 | -> | Plus |
| 3R | 13665590..13665901 | 478..789 | 99 | -> | Plus |
| 3R | 13666084..13666220 | 790..927 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:34 Download gff for
BO16308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9491806..9491942 | 790..927 | 98 | | Plus |
| arm_3R | 9487450..9487581 | 11..142 | 97 | -> | Plus |
| arm_3R | 9487883..9487953 | 143..213 | 100 | -> | Plus |
| arm_3R | 9488019..9488126 | 214..321 | 100 | -> | Plus |
| arm_3R | 9488692..9488773 | 322..403 | 100 | -> | Plus |
| arm_3R | 9491175..9491248 | 404..477 | 100 | -> | Plus |
| arm_3R | 9491312..9491623 | 478..789 | 99 | -> | Plus |
BO16308.complete Sequence
1084 bp assembled on 2006-10-11
GenBank Submission: FJ633778
> BO16308.complete
GAAGTTATCAGTCGACATGGTGGGATCTCGAGTGTATGTGGGCGGTCTGC
CCTACGGAGTGCGCGAGCGCGATTTGGAGCGCTTTTTCAAAGGCTACGGC
CGCACACGCGACATCCTCATCAAAAATGGCTACGGCTTTGTGGAATTCGA
AGACTATCGTGATGCCGACGATGCCGTCTATGAACTGAATGGCAAAGAGC
TGCTTGGCGAACGTGTGGTTGTTGAACCCGCCAGGGGTACCGCTCGTGGC
AGCAACCGCGACCGCTACGACGATCGATATGGTGGTCGGCGGGGGGGCGG
GGGCGGTCGTTACAACGAAAAATCATCCTCTCGTTATGGCCCACCGTTGC
GCACTGAGTACCGACTGATTGTGGAGAATTTGTCTAGCCGCGTTAGCTGG
CAGGATCTCAAGGATTACATGCGCCAGGCTGGCGAGGTCACCTATGCCGA
TGCCCACAAGCAGCGTCGCAATGAGGGCGTGGTTGAGTTCGCCTCGTTGT
CGGACATGAAGACGGCCATTGAGAAGTTGGATGACACCGAGCTAAACGGC
AGGCGGATCCACTTGGTCGAGGATCGTCGCGGAGGACGCAGCGGTGGTGG
CGGCGGCAGCGGACGTGGACGCTCCCGTTCGTCCAGCTCCCGATCGCGCT
CCCGATCCCGCAGGCGTTCTCGCTCTCGCCGCTCGTCGCACTCGCGCTCC
AAGTCTCGCAGCCGCTCCAAATCTCGTGGCGGACGCTCCAAGTCCAAGTC
GCCAGTCAAGTCTCGTTCTCGCTCCCGCTCGCGATCCAACAAATCGCGTG
ACGTGTCCAAGTCCAAGTCAAAGTCCCACTCCCGCACCCGCTCCCGTTCG
CCCAAACGTGAGCGTGACTCCCGTTCCCGATCGCGGTCCGTCTCGAAGCG
CGAGTCCCGTTCCCGCTCACGTTCCAAGTCCATCCACCGCGACTCCCGTT
CACGCGATCGATCCGCATCGGCTGAAAACAAGTCGCGTTCGCGCTCACGC
TCCCGTTCGGCCTCGCCCAAAAATGGAAACGCCTCACCGGACCGCAATAA
CGAGAGCATGGACGATGCAAGCTTTCTAGACCAT
BO16308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B52-RN | 1053 | CG10851-PN | 1..1050 | 17..1066 | 5250 | 100 | Plus |
| B52-RC | 1053 | CG10851-PC | 1..1050 | 17..1066 | 5250 | 100 | Plus |
| B52-RA | 1053 | CG10851-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B52-RN | 1725 | CG10851-RN | 314..1364 | 16..1066 | 5255 | 100 | Plus |
| B52-RC | 1557 | CG10851-RC | 146..1196 | 16..1066 | 5255 | 100 | Plus |
| B52-RA | 1565 | CG10851-RA | 154..1204 | 16..1066 | 5255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13665589..13665901 | 477..789 | 1565 | 100 | Plus |
| 3R | 32079331 | 3R | 13666084..13666248 | 790..954 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 13661733..13661860 | 16..143 | 640 | 100 | Plus |
| 3R | 32079331 | 3R | 13666418..13666530 | 954..1066 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 13662296..13662404 | 213..321 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 13662970..13663052 | 322..404 | 415 | 100 | Plus |
| 3R | 32079331 | 3R | 13665449..13665526 | 400..477 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 13662160..13662231 | 142..213 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:12:18 has no hits.
BO16308.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:34 Download gff for
BO16308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RC | 1..1053 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:15 Download gff for
BO16308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RH | 160..552 | 11..403 | 99 | -> | Plus |
| B52-RH | 2954..3622 | 404..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:53 Download gff for
BO16308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 155..1204 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:35 Download gff for
BO16308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RH | 160..552 | 11..403 | 99 | -> | Plus |
| B52-RH | 2954..3622 | 404..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:53 Download gff for
BO16308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| B52-RA | 155..1204 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:53 Download gff for
BO16308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13662161..13662231 | 143..213 | 100 | -> | Plus |
| 3R | 13662297..13662404 | 214..321 | 100 | -> | Plus |
| 3R | 13662970..13663051 | 322..403 | 100 | -> | Plus |
| 3R | 13665453..13665526 | 404..477 | 100 | -> | Plus |
| 3R | 13661734..13661859 | 17..142 | 100 | -> | Plus |
| 3R | 13665590..13665901 | 478..789 | 100 | -> | Plus |
| 3R | 13666084..13666248 | 790..954 | 100 | -> | Plus |
| 3R | 13666419..13666530 | 955..1068 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:53 Download gff for
BO16308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9487456..9487581 | 17..142 | 100 | -> | Plus |
| arm_3R | 9487883..9487953 | 143..213 | 100 | -> | Plus |
| arm_3R | 9488019..9488126 | 214..321 | 100 | -> | Plus |
| arm_3R | 9488692..9488773 | 322..403 | 100 | -> | Plus |
| arm_3R | 9491175..9491248 | 404..477 | 100 | -> | Plus |
| arm_3R | 9491312..9491623 | 478..789 | 100 | -> | Plus |
| arm_3R | 9491806..9491970 | 790..954 | 100 | -> | Plus |
| arm_3R | 9492141..9492252 | 955..1068 | 98 | | Plus |
BO16308.pep Sequence
Translation from 16 to 1084
> BO16308.pep
MVGSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDA
DDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYN
EKSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQR
RNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRGGRSGGGGGSGR
GRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSR
SRSRSRSNKSRDVSKSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSR
SRSKSIHRDSRSRDRSASAENKSRSRSRSRSASPKNGNASPDRNNESMDD
ASFLDH
BO16308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| B52-PN | 350 | CG10851-PN | 1..350 | 1..350 | 1770 | 100 | Plus |
| B52-PC | 350 | CG10851-PC | 1..350 | 1..350 | 1770 | 100 | Plus |
| B52-PA | 350 | CG10851-PA | 1..350 | 1..350 | 1770 | 100 | Plus |
| B52-PO | 355 | CG10851-PO | 1..355 | 1..350 | 1754 | 98.6 | Plus |
| B52-PM | 355 | CG10851-PM | 1..355 | 1..350 | 1754 | 98.6 | Plus |
