Clone BO16310 Report

Search the DGRC for BO16310

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG31924-RB
Protein status:BO16310.pep: validated full length
Sequenced Size:742

Clone Sequence Records

BO16310.3prime Sequence

740 bp (740 high quality bases) assembled on 2006-10-13

> BO16310.3prime
ATGGTCTAGAAAGCTTGCCAAAGGTGGCAGTCCAAAATATTGTGGCTTGA
ATCCTTCCAGCGATCGCAGTCTCAAAGTGGCGTGAGCACTTGCTCGAAAG
GATACCAGAGGATCGGGCACGAGGACCACCTGCATGCCAGCGGACAGAGC
AGCCTCCATACCAACCAAAGAGGACTCGAAGACCAGACACTTGCTCGGCT
CCGGCGATTCCTCAAAACGAGAGGCGGTGGTGAGGAAAACATCCGGAGCG
GGTTTCCCCCTCTTGACTTCTTCGTCGGAGCCGCTCAAAACCACGTGGTG
GAAGACATCGAAGGGCCTGGAGTGCCGACGCGTCTTTATCCTAAACGAAT
CCCGACAGCAGCCACTTGCGATAGCCATGGGAATGTTGAACGCTTTGAGG
TGATGCAGCAGACGCTCCACACCGGGCATCAGTCGAATGAATCCCATTTT
GCCACGACACTGAAGTTCCTGCTGGTTCTCAAACTCCGTCATGCTGAAGG
GCAGATTGAAGGTGTTTACGATTAGAGCAGCCTGCTCGGAATCTGGCTTT
CCCATGCACCGCATCTTCAGATCGAAGCTATACGTGTGACCATAGGGATC
CAGAATCCTTTGAACGGTTTCCGTTCTCAAACGCTCGCTGTCTATCAGCA
GACCATCGAGTTCGAAAATGCAATGGGTAACTGGCTGAAAAGAGCACTGC
CTAGAACCCGCCTCTTCCGCCGACATGTCGACTGATAACT

BO16310.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-PB 711 CG31924-RB 1..708 726..19 3540 100 Minus
CG31924-PA 651 CG31924-RA 30..648 637..19 3095 100 Minus
CG31924-PA 651 CG31924-RA 1..29 726..698 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-RB 819 CG31924-RB 29..736 726..19 3540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354184..1354891 19..726 3540 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:47:23 has no hits.

BO16310.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:36 Download gff for BO16310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-PB 1..711 16..726 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:05:48 Download gff for BO16310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..736 19..726 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:48 Download gff for BO16310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..736 19..726 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:48 Download gff for BO16310.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1354184..1354891 19..726 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:05:48 Download gff for BO16310.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354184..1354891 19..726 100   Plus

BO16310.5prime Sequence

740 bp (740 high quality bases) assembled on 2006-10-13

> BO16310.5prime
GAAGTTATCAGTCGACATGTCGGCGGAAGAGGCGGGTTCTAGGCAGTGCT
CTTTTCAGCCAGTTACCCATTGCATTTTCGAACTCGATGGTCTGCTGATA
GACAGCGAGCGTTTGAGAACGGAAACCGTTCAAAGGATTCTGGATCCCTA
TGGTCACACGTATAGCTTCGATCTGAAGATGCGGTGCATGGGAAAGCCAG
ATTCCGAGCAGGCTGCTCTAATCGTAAACACCTTCAATCTGCCCTTCAGC
ATGACGGAGTTTGAGAACCAGCAGGAACTTCAGTGTCGTGGCAAAATGGG
ATTCATTCGACTGATGCCCGGTGTGGAGCGTCTGCTGCATCACCTCAAAG
CGTTCAACATTCCCATGGCTATCGCAAGTGGCTGCTGTCGGGATTCGTTT
AGGATAAAGACGCGTCGGCACTCCAGGCCCTTCGATGTCTTCCACCACGT
GGTTTTGAGCGGCTCCGACGAAGAAGTCAAGAGGGGGAAACCCGCTCCGG
ATGTTTTCCTCACCACCGCCTCTCGTTTTGAGGAATCGCCGGAGCCGAGC
AAGTGTCTGGTCTTCGAGTCCTCTTTGGTTGGTATGGAGGCTGCTCTGTC
CGCTGGCATGCAGGTGGTCCTCGTGCCCGATCCTCTGGTATCCTTTCGAG
CAAGTGCTCACGCCACTTTGAGACTGCGATCGCTGGAAGGATTCAAGCCA
CAATATTTTGGACTGCCACCTTTGGCAAGCTTTCTAGACC

BO16310.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-PB 711 CG31924-RB 1..708 17..724 3540 100 Plus
CG31924-PA 651 CG31924-RA 30..648 106..724 3095 100 Plus
CG31924-PA 651 CG31924-RA 1..29 17..45 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-29 22:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-RB 819 CG31924-RB 29..736 17..724 3540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-29 22:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354184..1354891 724..17 3540 100 Minus
Blast to na_te.dros performed on 2015-01-29 22:43:16 has no hits.

BO16310.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:37 Download gff for BO16310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-PB 1..711 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:37:10 Download gff for BO16310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..736 17..724 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 01:01:38 Download gff for BO16310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..736 17..724 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 01:01:38 Download gff for BO16310.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1354184..1354891 17..724 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:37:10 Download gff for BO16310.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354184..1354891 17..724 100   Minus

BO16310.complete Sequence

742 bp assembled on 2006-10-11

GenBank Submission: FJ633779

> BO16310.complete
GAAGTTATCAGTCGACATGTCGGCGGAAGAGGCGGGTTCTAGGCAGTGCT
CTTTTCAGCCAGTTACCCATTGCATTTTCGAACTCGATGGTCTGCTGATA
GACAGCGAGCGTTTGAGAACGGAAACCGTTCAAAGGATTCTGGATCCCTA
TGGTCACACGTATAGCTTCGATCTGAAGATGCGGTGCATGGGAAAGCCAG
ATTCCGAGCAGGCTGCTCTAATCGTAAACACCTTCAATCTGCCCTTCAGC
ATGACGGAGTTTGAGAACCAGCAGGAACTTCAGTGTCGTGGCAAAATGGG
ATTCATTCGACTGATGCCCGGTGTGGAGCGTCTGCTGCATCACCTCAAAG
CGTTCAACATTCCCATGGCTATCGCAAGTGGCTGCTGTCGGGATTCGTTT
AGGATAAAGACGCGTCGGCACTCCAGGCCCTTCGATGTCTTCCACCACGT
GGTTTTGAGCGGCTCCGACGAAGAAGTCAAGAGGGGGAAACCCGCTCCGG
ATGTTTTCCTCACCACCGCCTCTCGTTTTGAGGAATCGCCGGAGCCGAGC
AAGTGTCTGGTCTTCGAGTCCTCTTTGGTTGGTATGGAGGCTGCTCTGTC
CGCTGGCATGCAGGTGGTCCTCGTGCCCGATCCTCTGGTATCCTTTCGAG
CAAGTGCTCACGCCACTTTGAGACTGCGATCGCTGGAAGGATTCAAGCCA
CAATATTTTGGACTGCCACCTTTGGCAAGCTTTCTAGACCAT

BO16310.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-RB 711 CG31924-PB 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-RB 819 CG31924-RB 29..736 17..724 3540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1354184..1354891 724..17 3540 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:15:33 has no hits.

BO16310.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:38 Download gff for BO16310.complete
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 1..711 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:17 Download gff for BO16310.complete
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..736 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:35 Download gff for BO16310.complete
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..736 17..726 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:40 Download gff for BO16310.complete
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..736 17..724 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:33 Download gff for BO16310.complete
Subject Subject Range Query Range Percent Splice Strand
CG31924-RB 29..736 17..726 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:33 Download gff for BO16310.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1354181..1354891 17..726 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:35 Download gff for BO16310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1354181..1354891 17..726 99   Minus

BO16310.pep Sequence

Translation from 16 to 742

> BO16310.pep
MSAEEAGSRQCSFQPVTHCIFELDGLLIDSERLRTETVQRILDPYGHTYS
FDLKMRCMGKPDSEQAALIVNTFNLPFSMTEFENQQELQCRGKMGFIRLM
PGVERLLHHLKAFNIPMAIASGCCRDSFRIKTRRHSRPFDVFHHVVLSGS
DEEVKRGKPAPDVFLTTASRFEESPEPSKCLVFESSLVGMEAALSAGMQV
VLVPDPLVSFRASAHATLRLRSLEGFKPQYFGLPPLASFLDH

BO16310.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31924-PB 236 CG31924-PB 1..236 1..236 1231 100 Plus
Gs1l-PA 231 CG15441-PA 9..227 16..234 532 48.9 Plus
Gs1l-PB 231 CG15441-PB 9..227 16..234 486 43.4 Plus
CG5565-PA 240 CG5565-PA 3..230 8..235 424 41.3 Plus
CG5556-PB 299 CG5556-PB 22..244 11..235 233 28.9 Plus