Clone Sequence Records
BO16310.3prime Sequence
740 bp (740 high quality bases) assembled on 2006-10-13
> BO16310.3prime
ATGGTCTAGAAAGCTTGCCAAAGGTGGCAGTCCAAAATATTGTGGCTTGA
ATCCTTCCAGCGATCGCAGTCTCAAAGTGGCGTGAGCACTTGCTCGAAAG
GATACCAGAGGATCGGGCACGAGGACCACCTGCATGCCAGCGGACAGAGC
AGCCTCCATACCAACCAAAGAGGACTCGAAGACCAGACACTTGCTCGGCT
CCGGCGATTCCTCAAAACGAGAGGCGGTGGTGAGGAAAACATCCGGAGCG
GGTTTCCCCCTCTTGACTTCTTCGTCGGAGCCGCTCAAAACCACGTGGTG
GAAGACATCGAAGGGCCTGGAGTGCCGACGCGTCTTTATCCTAAACGAAT
CCCGACAGCAGCCACTTGCGATAGCCATGGGAATGTTGAACGCTTTGAGG
TGATGCAGCAGACGCTCCACACCGGGCATCAGTCGAATGAATCCCATTTT
GCCACGACACTGAAGTTCCTGCTGGTTCTCAAACTCCGTCATGCTGAAGG
GCAGATTGAAGGTGTTTACGATTAGAGCAGCCTGCTCGGAATCTGGCTTT
CCCATGCACCGCATCTTCAGATCGAAGCTATACGTGTGACCATAGGGATC
CAGAATCCTTTGAACGGTTTCCGTTCTCAAACGCTCGCTGTCTATCAGCA
GACCATCGAGTTCGAAAATGCAATGGGTAACTGGCTGAAAAGAGCACTGC
CTAGAACCCGCCTCTTCCGCCGACATGTCGACTGATAACT
BO16310.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-PB | 711 | CG31924-RB | 1..708 | 726..19 | 3540 | 100 | Minus |
CG31924-PA | 651 | CG31924-RA | 30..648 | 637..19 | 3095 | 100 | Minus |
CG31924-PA | 651 | CG31924-RA | 1..29 | 726..698 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-RB | 819 | CG31924-RB | 29..736 | 726..19 | 3540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354184..1354891 | 19..726 | 3540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:47:23 has no hits.
BO16310.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:36 Download gff for
BO16310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-PB | 1..711 | 16..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:05:48 Download gff for
BO16310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..736 | 19..726 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:48 Download gff for
BO16310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..736 | 19..726 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:48 Download gff for
BO16310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354184..1354891 | 19..726 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:05:48 Download gff for
BO16310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354184..1354891 | 19..726 | 100 | | Plus |
BO16310.5prime Sequence
740 bp (740 high quality bases) assembled on 2006-10-13
> BO16310.5prime
GAAGTTATCAGTCGACATGTCGGCGGAAGAGGCGGGTTCTAGGCAGTGCT
CTTTTCAGCCAGTTACCCATTGCATTTTCGAACTCGATGGTCTGCTGATA
GACAGCGAGCGTTTGAGAACGGAAACCGTTCAAAGGATTCTGGATCCCTA
TGGTCACACGTATAGCTTCGATCTGAAGATGCGGTGCATGGGAAAGCCAG
ATTCCGAGCAGGCTGCTCTAATCGTAAACACCTTCAATCTGCCCTTCAGC
ATGACGGAGTTTGAGAACCAGCAGGAACTTCAGTGTCGTGGCAAAATGGG
ATTCATTCGACTGATGCCCGGTGTGGAGCGTCTGCTGCATCACCTCAAAG
CGTTCAACATTCCCATGGCTATCGCAAGTGGCTGCTGTCGGGATTCGTTT
AGGATAAAGACGCGTCGGCACTCCAGGCCCTTCGATGTCTTCCACCACGT
GGTTTTGAGCGGCTCCGACGAAGAAGTCAAGAGGGGGAAACCCGCTCCGG
ATGTTTTCCTCACCACCGCCTCTCGTTTTGAGGAATCGCCGGAGCCGAGC
AAGTGTCTGGTCTTCGAGTCCTCTTTGGTTGGTATGGAGGCTGCTCTGTC
CGCTGGCATGCAGGTGGTCCTCGTGCCCGATCCTCTGGTATCCTTTCGAG
CAAGTGCTCACGCCACTTTGAGACTGCGATCGCTGGAAGGATTCAAGCCA
CAATATTTTGGACTGCCACCTTTGGCAAGCTTTCTAGACC
BO16310.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-PB | 711 | CG31924-RB | 1..708 | 17..724 | 3540 | 100 | Plus |
CG31924-PA | 651 | CG31924-RA | 30..648 | 106..724 | 3095 | 100 | Plus |
CG31924-PA | 651 | CG31924-RA | 1..29 | 17..45 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-29 22:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-RB | 819 | CG31924-RB | 29..736 | 17..724 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-29 22:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354184..1354891 | 724..17 | 3540 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-29 22:43:16 has no hits.
BO16310.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:37 Download gff for
BO16310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-PB | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:37:10 Download gff for
BO16310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..736 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 01:01:38 Download gff for
BO16310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..736 | 17..724 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 01:01:38 Download gff for
BO16310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354184..1354891 | 17..724 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:37:10 Download gff for
BO16310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354184..1354891 | 17..724 | 100 | | Minus |
BO16310.complete Sequence
742 bp assembled on 2006-10-11
GenBank Submission: FJ633779
> BO16310.complete
GAAGTTATCAGTCGACATGTCGGCGGAAGAGGCGGGTTCTAGGCAGTGCT
CTTTTCAGCCAGTTACCCATTGCATTTTCGAACTCGATGGTCTGCTGATA
GACAGCGAGCGTTTGAGAACGGAAACCGTTCAAAGGATTCTGGATCCCTA
TGGTCACACGTATAGCTTCGATCTGAAGATGCGGTGCATGGGAAAGCCAG
ATTCCGAGCAGGCTGCTCTAATCGTAAACACCTTCAATCTGCCCTTCAGC
ATGACGGAGTTTGAGAACCAGCAGGAACTTCAGTGTCGTGGCAAAATGGG
ATTCATTCGACTGATGCCCGGTGTGGAGCGTCTGCTGCATCACCTCAAAG
CGTTCAACATTCCCATGGCTATCGCAAGTGGCTGCTGTCGGGATTCGTTT
AGGATAAAGACGCGTCGGCACTCCAGGCCCTTCGATGTCTTCCACCACGT
GGTTTTGAGCGGCTCCGACGAAGAAGTCAAGAGGGGGAAACCCGCTCCGG
ATGTTTTCCTCACCACCGCCTCTCGTTTTGAGGAATCGCCGGAGCCGAGC
AAGTGTCTGGTCTTCGAGTCCTCTTTGGTTGGTATGGAGGCTGCTCTGTC
CGCTGGCATGCAGGTGGTCCTCGTGCCCGATCCTCTGGTATCCTTTCGAG
CAAGTGCTCACGCCACTTTGAGACTGCGATCGCTGGAAGGATTCAAGCCA
CAATATTTTGGACTGCCACCTTTGGCAAGCTTTCTAGACCAT
BO16310.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-RB | 711 | CG31924-PB | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-RB | 819 | CG31924-RB | 29..736 | 17..724 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1354184..1354891 | 724..17 | 3540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:15:33 has no hits.
BO16310.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:38 Download gff for
BO16310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:17 Download gff for
BO16310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..736 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:35 Download gff for
BO16310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..736 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:40 Download gff for
BO16310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..736 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:33 Download gff for
BO16310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31924-RB | 29..736 | 17..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:33 Download gff for
BO16310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1354181..1354891 | 17..726 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:35 Download gff for
BO16310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1354181..1354891 | 17..726 | 99 | | Minus |
BO16310.pep Sequence
Translation from 16 to 742
> BO16310.pep
MSAEEAGSRQCSFQPVTHCIFELDGLLIDSERLRTETVQRILDPYGHTYS
FDLKMRCMGKPDSEQAALIVNTFNLPFSMTEFENQQELQCRGKMGFIRLM
PGVERLLHHLKAFNIPMAIASGCCRDSFRIKTRRHSRPFDVFHHVVLSGS
DEEVKRGKPAPDVFLTTASRFEESPEPSKCLVFESSLVGMEAALSAGMQV
VLVPDPLVSFRASAHATLRLRSLEGFKPQYFGLPPLASFLDH
BO16310.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31924-PB | 236 | CG31924-PB | 1..236 | 1..236 | 1231 | 100 | Plus |
Gs1l-PA | 231 | CG15441-PA | 9..227 | 16..234 | 532 | 48.9 | Plus |
Gs1l-PB | 231 | CG15441-PB | 9..227 | 16..234 | 486 | 43.4 | Plus |
CG5565-PA | 240 | CG5565-PA | 3..230 | 8..235 | 424 | 41.3 | Plus |
CG5556-PB | 299 | CG5556-PB | 22..244 | 11..235 | 233 | 28.9 | Plus |