Clone BO16315 Report

Search the DGRC for BO16315

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta4R1-RA
Protein status:BO16315.pep: validated full length
Sequenced Size:679

Clone Sequence Records

BO16315.3prime Sequence

677 bp (677 high quality bases) assembled on 2006-10-13

> BO16315.3prime
ATGGTCTAGAAAGCTTGCTTTTGTGTTTAATATCCTTCGCTTGGGACCAG
CTAAGATATCCCCTCTAAGGGACTCCAGGTTGATGCTATTCATCTTTGTT
ATGCCATTTTTGCTTATCAGGAACAAATCTATGTTGCGCAAGTTGATAAC
GAATCGTTTATACAGCTCAATCACACACTTTTTGATAACATCATAGGCTG
CCTGCGTATCCATGTCCGGTTTGTAGAACTCCTCGAGAATGGGAGTGCAG
AAGTTCATGGCGGCTCCGTGGCCACCGTACCGAACGGGAACCGAGTTACC
CAAATAATCGATGTAGTGCAACTCGGGACCGCTGGTCAAATCGTATCCGC
CCACCAACAGCGACACCTGGAACGTGCAATCGCTCTTCAAATAGGCGGAC
AAATGCCTCCGGATGAAGTGCACCGCTCCGCGAACGGTTAAGTCGTATCC
GTTGGTTATCTTGTAAAGATCCATGTTCCGGAGGATGAAATCCGAGAACT
TCAGGCAGTCTCCACCGTCCCCAGCGGTCGACATCATGCAGTAGTCCGAG
ATGCGGTGAGTCTTTCTGACCTCGTCATCCAGCCACATCGCCGACTTGTT
CCTCATGGTATCCGAGGCCAGTATGATGAAATCAGTTCCTTTAACACCCA
AAATGGTTTCCATGTCGACTGATAACT

BO16315.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17301-PA 648 CG17301-RA 1..645 663..19 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 04:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R1-RA 830 CG17301-RA 102..746 663..19 3225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 04:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2653288..2653842 573..19 2775 100 Minus
2L 23513712 2L 2653147..2653237 663..573 455 100 Minus
Blast to na_te.dros performed on 2015-01-31 04:31:22 has no hits.

BO16315.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:40 Download gff for BO16315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17301-PA 1..648 15..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:58:21 Download gff for BO16315.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..749 15..663 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:29:59 Download gff for BO16315.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..749 15..663 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:29:59 Download gff for BO16315.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2653147..2653237 573..663 100 -> Minus
2L 2653289..2653845 15..572 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:58:21 Download gff for BO16315.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2653147..2653237 573..663 100 -> Minus
arm_2L 2653289..2653845 15..572 99   Minus

BO16315.5prime Sequence

677 bp (677 high quality bases) assembled on 2006-10-13

> BO16315.5prime
GAAGTTATCAGTCGACATGGAAACCATTTTGGGTGTTAAAGGAACTGATT
TCATCATACTGGCCTCGGATACCATGAGGAACAAGTCGGCGATGTGGCTG
GATGACGAGGTCAGAAAGACTCACCGCATCTCGGACTACTGCATGATGTC
GACCGCTGGGGACGGTGGAGACTGCCTGAAGTTCTCGGATTTCATCCTCC
GGAACATGGATCTTTACAAGATAACCAACGGATACGACTTAACCGTTCGC
GGAGCGGTGCACTTCATCCGGAGGCATTTGTCCGCCTATTTGAAGAGCGA
TTGCACGTTCCAGGTGTCGCTGTTGGTGGGCGGATACGATTTGACCAGCG
GTCCCGAGTTGCACTACATCGATTATTTGGGTAACTCGGTTCCCGTTCGG
TACGGTGGCCACGGAGCCGCCATGAACTTCTGCACTCCCATTCTCGAGGA
GTTCTACAAACCGGACATGGATACGCAGGCAGCCTATGATGTTATCAAAA
AGTGTGTGATTGAGCTGTATAAACGATTCGTTATCAACTTGCGCAACATA
GATTTGTTCCTGATAAGCAAAAATGGCATAACAAAGATGAATAGCATCAA
CCTGGAGTCCCTTAGAGGGGATATCTTAGCTGGTCCCAAGCGAAGGATAT
TAAACACAAAAGCAAGCTTTCTAGACC

BO16315.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17301-PA 648 CG17301-RA 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R1-RA 830 CG17301-RA 102..746 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2653288..2653842 107..661 2775 100 Plus
2L 23513712 2L 2653147..2653237 17..107 455 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:11:45 has no hits.

BO16315.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:41 Download gff for BO16315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17301-PA 1..648 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:14:38 Download gff for BO16315.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..749 17..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:26 Download gff for BO16315.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..749 17..665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:26 Download gff for BO16315.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2653147..2653237 17..107 100 -> Plus
2L 2653289..2653845 108..665 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:14:38 Download gff for BO16315.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2653147..2653237 17..107 100 -> Plus
arm_2L 2653289..2653845 108..665 99   Plus

BO16315.complete Sequence

679 bp assembled on 2006-10-11

GenBank Submission: FJ633780

> BO16315.complete
GAAGTTATCAGTCGACATGGAAACCATTTTGGGTGTTAAAGGAACTGATT
TCATCATACTGGCCTCGGATACCATGAGGAACAAGTCGGCGATGTGGCTG
GATGACGAGGTCAGAAAGACTCACCGCATCTCGGACTACTGCATGATGTC
GACCGCTGGGGACGGTGGAGACTGCCTGAAGTTCTCGGATTTCATCCTCC
GGAACATGGATCTTTACAAGATAACCAACGGATACGACTTAACCGTTCGC
GGAGCGGTGCACTTCATCCGGAGGCATTTGTCCGCCTATTTGAAGAGCGA
TTGCACGTTCCAGGTGTCGCTGTTGGTGGGCGGATACGATTTGACCAGCG
GTCCCGAGTTGCACTACATCGATTATTTGGGTAACTCGGTTCCCGTTCGG
TACGGTGGCCACGGAGCCGCCATGAACTTCTGCACTCCCATTCTCGAGGA
GTTCTACAAACCGGACATGGATACGCAGGCAGCCTATGATGTTATCAAAA
AGTGTGTGATTGAGCTGTATAAACGATTCGTTATCAACTTGCGCAACATA
GATTTGTTCCTGATAAGCAAAAATGGCATAACAAAGATGAATAGCATCAA
CCTGGAGTCCCTTAGAGGGGATATCTTAGCTGGTCCCAAGCGAAGGATAT
TAAACACAAAAGCAAGCTTTCTAGACCAT

BO16315.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R1-RA 648 CG17301-PA 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R1-RA 830 CG17301-RA 102..746 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2653288..2653842 107..661 2775 100 Plus
2L 23513712 2L 2653147..2653237 17..107 455 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:21:22 has no hits.

BO16315.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:43 Download gff for BO16315.complete
Subject Subject Range Query Range Percent Splice Strand
CG17301-RA 1..648 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:19 Download gff for BO16315.complete
Subject Subject Range Query Range Percent Splice Strand
CG17301-RA 36..683 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:02 Download gff for BO16315.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..736 17..651 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:44 Download gff for BO16315.complete
Subject Subject Range Query Range Percent Splice Strand
CG17301-RA 36..683 17..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:44 Download gff for BO16315.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R1-RA 102..736 17..651 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:44 Download gff for BO16315.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2653147..2653237 17..107 100 -> Plus
2L 2653289..2653832 108..651 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:02 Download gff for BO16315.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2653147..2653237 17..107 100 -> Plus
arm_2L 2653289..2653832 108..651 100   Plus

BO16315.pep Sequence

Translation from 16 to 679

> BO16315.pep
METILGVKGTDFIILASDTMRNKSAMWLDDEVRKTHRISDYCMMSTAGDG
GDCLKFSDFILRNMDLYKITNGYDLTVRGAVHFIRRHLSAYLKSDCTFQV
SLLVGGYDLTSGPELHYIDYLGNSVPVRYGGHGAAMNFCTPILEEFYKPD
MDTQAAYDVIKKCVIELYKRFVINLRNIDLFLISKNGITKMNSINLESLR
GDILAGPKRRILNTKASFLDH

BO16315.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R1-PA 215 CG17301-PA 1..215 1..215 1128 100 Plus
Prosbeta4R2-PB 210 CG17302-PB 3..207 1..205 525 43.9 Plus
Prosbeta4R2-PA 210 CG17302-PA 3..207 1..205 525 43.9 Plus
Prosbeta4-PB 201 CG17331-PB 1..199 1..199 489 43.2 Plus
Prosbeta4-PA 201 CG17331-PA 1..199 1..199 489 43.2 Plus