Clone Sequence Records
BO16315.3prime Sequence
677 bp (677 high quality bases) assembled on 2006-10-13
> BO16315.3prime
ATGGTCTAGAAAGCTTGCTTTTGTGTTTAATATCCTTCGCTTGGGACCAG
CTAAGATATCCCCTCTAAGGGACTCCAGGTTGATGCTATTCATCTTTGTT
ATGCCATTTTTGCTTATCAGGAACAAATCTATGTTGCGCAAGTTGATAAC
GAATCGTTTATACAGCTCAATCACACACTTTTTGATAACATCATAGGCTG
CCTGCGTATCCATGTCCGGTTTGTAGAACTCCTCGAGAATGGGAGTGCAG
AAGTTCATGGCGGCTCCGTGGCCACCGTACCGAACGGGAACCGAGTTACC
CAAATAATCGATGTAGTGCAACTCGGGACCGCTGGTCAAATCGTATCCGC
CCACCAACAGCGACACCTGGAACGTGCAATCGCTCTTCAAATAGGCGGAC
AAATGCCTCCGGATGAAGTGCACCGCTCCGCGAACGGTTAAGTCGTATCC
GTTGGTTATCTTGTAAAGATCCATGTTCCGGAGGATGAAATCCGAGAACT
TCAGGCAGTCTCCACCGTCCCCAGCGGTCGACATCATGCAGTAGTCCGAG
ATGCGGTGAGTCTTTCTGACCTCGTCATCCAGCCACATCGCCGACTTGTT
CCTCATGGTATCCGAGGCCAGTATGATGAAATCAGTTCCTTTAACACCCA
AAATGGTTTCCATGTCGACTGATAACT
BO16315.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17301-PA | 648 | CG17301-RA | 1..645 | 663..19 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 04:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R1-RA | 830 | CG17301-RA | 102..746 | 663..19 | 3225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 04:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2653288..2653842 | 573..19 | 2775 | 100 | Minus |
2L | 23513712 | 2L | 2653147..2653237 | 663..573 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 04:31:22 has no hits.
BO16315.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:40 Download gff for
BO16315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17301-PA | 1..648 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:58:21 Download gff for
BO16315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..749 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:29:59 Download gff for
BO16315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..749 | 15..663 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:29:59 Download gff for
BO16315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2653147..2653237 | 573..663 | 100 | -> | Minus |
2L | 2653289..2653845 | 15..572 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:58:21 Download gff for
BO16315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2653147..2653237 | 573..663 | 100 | -> | Minus |
arm_2L | 2653289..2653845 | 15..572 | 99 | | Minus |
BO16315.5prime Sequence
677 bp (677 high quality bases) assembled on 2006-10-13
> BO16315.5prime
GAAGTTATCAGTCGACATGGAAACCATTTTGGGTGTTAAAGGAACTGATT
TCATCATACTGGCCTCGGATACCATGAGGAACAAGTCGGCGATGTGGCTG
GATGACGAGGTCAGAAAGACTCACCGCATCTCGGACTACTGCATGATGTC
GACCGCTGGGGACGGTGGAGACTGCCTGAAGTTCTCGGATTTCATCCTCC
GGAACATGGATCTTTACAAGATAACCAACGGATACGACTTAACCGTTCGC
GGAGCGGTGCACTTCATCCGGAGGCATTTGTCCGCCTATTTGAAGAGCGA
TTGCACGTTCCAGGTGTCGCTGTTGGTGGGCGGATACGATTTGACCAGCG
GTCCCGAGTTGCACTACATCGATTATTTGGGTAACTCGGTTCCCGTTCGG
TACGGTGGCCACGGAGCCGCCATGAACTTCTGCACTCCCATTCTCGAGGA
GTTCTACAAACCGGACATGGATACGCAGGCAGCCTATGATGTTATCAAAA
AGTGTGTGATTGAGCTGTATAAACGATTCGTTATCAACTTGCGCAACATA
GATTTGTTCCTGATAAGCAAAAATGGCATAACAAAGATGAATAGCATCAA
CCTGGAGTCCCTTAGAGGGGATATCTTAGCTGGTCCCAAGCGAAGGATAT
TAAACACAAAAGCAAGCTTTCTAGACC
BO16315.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17301-PA | 648 | CG17301-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R1-RA | 830 | CG17301-RA | 102..746 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2653288..2653842 | 107..661 | 2775 | 100 | Plus |
2L | 23513712 | 2L | 2653147..2653237 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:11:45 has no hits.
BO16315.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:41 Download gff for
BO16315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17301-PA | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:14:38 Download gff for
BO16315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..749 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:26 Download gff for
BO16315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..749 | 17..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:26 Download gff for
BO16315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2653147..2653237 | 17..107 | 100 | -> | Plus |
2L | 2653289..2653845 | 108..665 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:14:38 Download gff for
BO16315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2653147..2653237 | 17..107 | 100 | -> | Plus |
arm_2L | 2653289..2653845 | 108..665 | 99 | | Plus |
BO16315.complete Sequence
679 bp assembled on 2006-10-11
GenBank Submission: FJ633780
> BO16315.complete
GAAGTTATCAGTCGACATGGAAACCATTTTGGGTGTTAAAGGAACTGATT
TCATCATACTGGCCTCGGATACCATGAGGAACAAGTCGGCGATGTGGCTG
GATGACGAGGTCAGAAAGACTCACCGCATCTCGGACTACTGCATGATGTC
GACCGCTGGGGACGGTGGAGACTGCCTGAAGTTCTCGGATTTCATCCTCC
GGAACATGGATCTTTACAAGATAACCAACGGATACGACTTAACCGTTCGC
GGAGCGGTGCACTTCATCCGGAGGCATTTGTCCGCCTATTTGAAGAGCGA
TTGCACGTTCCAGGTGTCGCTGTTGGTGGGCGGATACGATTTGACCAGCG
GTCCCGAGTTGCACTACATCGATTATTTGGGTAACTCGGTTCCCGTTCGG
TACGGTGGCCACGGAGCCGCCATGAACTTCTGCACTCCCATTCTCGAGGA
GTTCTACAAACCGGACATGGATACGCAGGCAGCCTATGATGTTATCAAAA
AGTGTGTGATTGAGCTGTATAAACGATTCGTTATCAACTTGCGCAACATA
GATTTGTTCCTGATAAGCAAAAATGGCATAACAAAGATGAATAGCATCAA
CCTGGAGTCCCTTAGAGGGGATATCTTAGCTGGTCCCAAGCGAAGGATAT
TAAACACAAAAGCAAGCTTTCTAGACCAT
BO16315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R1-RA | 648 | CG17301-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R1-RA | 830 | CG17301-RA | 102..746 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2653288..2653842 | 107..661 | 2775 | 100 | Plus |
2L | 23513712 | 2L | 2653147..2653237 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:21:22 has no hits.
BO16315.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:43 Download gff for
BO16315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17301-RA | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:19 Download gff for
BO16315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17301-RA | 36..683 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:02 Download gff for
BO16315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..736 | 17..651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:44 Download gff for
BO16315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17301-RA | 36..683 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:44 Download gff for
BO16315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4R1-RA | 102..736 | 17..651 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:44 Download gff for
BO16315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2653147..2653237 | 17..107 | 100 | -> | Plus |
2L | 2653289..2653832 | 108..651 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:02 Download gff for
BO16315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2653147..2653237 | 17..107 | 100 | -> | Plus |
arm_2L | 2653289..2653832 | 108..651 | 100 | | Plus |
BO16315.pep Sequence
Translation from 16 to 679
> BO16315.pep
METILGVKGTDFIILASDTMRNKSAMWLDDEVRKTHRISDYCMMSTAGDG
GDCLKFSDFILRNMDLYKITNGYDLTVRGAVHFIRRHLSAYLKSDCTFQV
SLLVGGYDLTSGPELHYIDYLGNSVPVRYGGHGAAMNFCTPILEEFYKPD
MDTQAAYDVIKKCVIELYKRFVINLRNIDLFLISKNGITKMNSINLESLR
GDILAGPKRRILNTKASFLDH
BO16315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta4R1-PA | 215 | CG17301-PA | 1..215 | 1..215 | 1128 | 100 | Plus |
Prosbeta4R2-PB | 210 | CG17302-PB | 3..207 | 1..205 | 525 | 43.9 | Plus |
Prosbeta4R2-PA | 210 | CG17302-PA | 3..207 | 1..205 | 525 | 43.9 | Plus |
Prosbeta4-PB | 201 | CG17331-PB | 1..199 | 1..199 | 489 | 43.2 | Plus |
Prosbeta4-PA | 201 | CG17331-PA | 1..199 | 1..199 | 489 | 43.2 | Plus |